transcript_id species deltadmax description runs exhibiting sample-specific expression AT1G01010.1 Arabidopsis thaliana 0.58 NAC domain containing protein 1 SRR364677:GFP sample SRR364678:nonGFP sample AT1G01020.1 Arabidopsis thaliana 0.30 Arv1-like protein SRR1652314:atrtf2-1 AT1G01030.1 Arabidopsis thaliana 0.32 AP2/B3-like transcriptional factor family protein SRR1207201:GSM1359153: 35S:NGA 3; Arabidopsis thaliana; RNA-Seq AT1G01046.1 Arabidopsis thaliana 0.38 MIR838a; miRNA SRR1652315:prp8-7 AT1G01070.1 Arabidopsis thaliana 0.35 nodulin MtN21 /EamA-like transporter family protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT1G01070.2 Arabidopsis thaliana 0.41 nodulin MtN21 /EamA-like transporter family protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G01073.1 Arabidopsis thaliana 0.79 Unknown SRR1106559:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 AT1G01115.1 Arabidopsis thaliana 0.53 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G01140.1 Arabidopsis thaliana 0.37 CBL-interacting protein kinase 9 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G01140.3 Arabidopsis thaliana 0.45 CBL-interacting protein kinase 9 SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq AT1G01240.3 Arabidopsis thaliana 0.31 Unknown SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G01290.1 Arabidopsis thaliana 0.40 cofactor of nitrate reductase and xanthine dehydrogenase 3 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G01310.1 Arabidopsis thaliana 0.92 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G01340.1 Arabidopsis thaliana 0.53 cyclic nucleotide gated channel 10 SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G01355.1 Arabidopsis thaliana 0.34 Putative endonuclease or glycosyl hydrolase SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G01448.3 Arabidopsis thaliana 0.38 other RNA SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G01460.1 Arabidopsis thaliana 0.94 Phosphatidylinositol-4-phosphate 5-kinase, core SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G01480.1 Arabidopsis thaliana 0.57 1-amino-cyclopropane-1-carboxylate synthase 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G01500.1 Arabidopsis thaliana 0.54 Erythronate-4-phosphate dehydrogenase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G01580.1 Arabidopsis thaliana 0.44 ferric reduction oxidase 2 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G01640.2 Arabidopsis thaliana 0.46 BTB/POZ domain-containing protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G01660.1 Arabidopsis thaliana 0.41 RING/U-box superfamily protein SRR364677:GFP sample AT1G01680.1 Arabidopsis thaliana 0.51 plant U-box 54 SRR446035:Avr.6h.A AT1G01740.2 Arabidopsis thaliana 0.35 Protein kinase protein with tetratricopeptide repeat domain SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G01750.1 Arabidopsis thaliana 0.56 actin depolymerizing factor 11 SRR364677:GFP sample AT1G01770.1 Arabidopsis thaliana 0.40 Unknown SRR1652314:atrtf2-1 AT1G01780.1 Arabidopsis thaliana 0.78 GATA type zinc finger transcription factor family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G01810.1 Arabidopsis thaliana 0.36 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G01830.2 Arabidopsis thaliana 0.38 ARM repeat superfamily protein SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT1G01880.1 Arabidopsis thaliana 0.38 5'-3' exonuclease family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G01910.3 Arabidopsis thaliana 0.62 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR627655:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT1G01950.2 Arabidopsis thaliana 0.35 armadillo repeat kinesin 2 SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G01980.1 Arabidopsis thaliana 0.95 FAD-binding Berberine family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G02000.1 Arabidopsis thaliana 0.85 UDP-D-glucuronate 4-epimerase 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G02010.1 Arabidopsis thaliana 0.40 secretory 1A SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G02030.1 Arabidopsis thaliana 0.71 C2H2-like zinc finger protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G02060.1 Arabidopsis thaliana 0.32 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT1G02074.1 Arabidopsis thaliana 0.87 Unknown SRR1652315:prp8-7 AT1G02100.2 Arabidopsis thaliana 0.34 Leucine carboxyl methyltransferase SRR515336:GSM951358: rve8_mock_1; Arabidopsis thaliana; RNA-Seq SRR515331:GSM951356: rve8_DEX_2; Arabidopsis thaliana; RNA-Seq AT1G02120.1 Arabidopsis thaliana 0.40 GRAM domain family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT1G02136.1 Arabidopsis thaliana 0.33 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G02145.3 Arabidopsis thaliana 0.39 homolog of asparagine-linked glycosylation 12 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G02145.4 Arabidopsis thaliana 0.32 homolog of asparagine-linked glycosylation 12 SRR907287:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G02160.2 Arabidopsis thaliana 0.71 Cox19 family protein (CHCH motif) SRR1652314:atrtf2-1 AT1G02190.2 Arabidopsis thaliana 0.44 Fatty acid hydroxylase superfamily ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT1G02220.1 Arabidopsis thaliana 0.44 NAC domain containing protein 3 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G02230.1 Arabidopsis thaliana 0.39 NAC domain containing protein 4 SRR907286:SAD1 dynamically regulates alternative splicing and stress tolerance ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G02391.1 Arabidopsis thaliana 0.97 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G02400.1 Arabidopsis thaliana 0.32 gibberellin 2-oxidase 6 SRR446032:Vir.1h.B AT1G02410.1 Arabidopsis thaliana 0.48 cytochrome c oxidase assembly protein CtaG / Cox11 family SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G02430.1 Arabidopsis thaliana 0.73 ADP-ribosylation factor D1B ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G02440.1 Arabidopsis thaliana 0.47 ADP-ribosylation factor D1A ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G02460.1 Arabidopsis thaliana 0.30 Pectin lyase-like superfamily protein SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq AT1G02470.1 Arabidopsis thaliana 0.33 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G02470.2 Arabidopsis thaliana 0.36 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR609416:RNAseq data from activation tagging mutant of OSD1 in bon1-2 SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT1G02500.1 Arabidopsis thaliana 0.45 S-adenosylmethionine synthetase 1 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G02530.1 Arabidopsis thaliana 0.34 P-glycoprotein 12 SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G02575.1 Arabidopsis thaliana 0.78 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G02580.1 Arabidopsis thaliana 0.66 SET domain-containing protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G02590.1 Arabidopsis thaliana 0.54 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G02620.1 Arabidopsis thaliana 0.47 Ras-related small GTP-binding family protein SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G02630.1 Arabidopsis thaliana 0.44 Nucleoside transporter family protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G02650.1 Arabidopsis thaliana 0.46 Tetratricopeptide repeat (TPR)-like superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G02681.1 Arabidopsis thaliana 0.46 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G02690.2 Arabidopsis thaliana 0.90 importin alpha isoform 6 SRR949965:early shade responses in Arabidopsis adult plants (Col, 1 hr sun) AT1G02720.1 Arabidopsis thaliana 0.30 galacturonosyltransferase 5 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G02790.1 Arabidopsis thaliana 0.89 polygalacturonase 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G02850.4 Arabidopsis thaliana 0.51 beta glucosidase 11 SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT1G02850.5 Arabidopsis thaliana 0.35 beta glucosidase 11 SRR584119:GSM1017160: NMD_MOCK_R1; Arabidopsis thaliana; RNA-Seq AT1G02860.2 Arabidopsis thaliana 0.30 SPX (SYG1/Pho81/XPR1) domain-containing protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G02880.1 Arabidopsis thaliana 0.48 thiamin pyrophosphokinase1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G02880.3 Arabidopsis thaliana 0.47 thiamin pyrophosphokinase1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G02940.1 Arabidopsis thaliana 0.33 glutathione S-transferase (class phi) 5 SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G02950.3 Arabidopsis thaliana 0.30 glutathione S-transferase F4 SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G02980.1 Arabidopsis thaliana 0.52 cullin 2 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G03000.1 Arabidopsis thaliana 0.46 peroxin 6 SRR1652314:atrtf2-1 AT1G03022.1 Arabidopsis thaliana 0.93 Unknown SRR068972:GSM607728: Col-WTxLer-WT_full-Endosperm AT1G03050.1 Arabidopsis thaliana 0.81 ENTH/ANTH/VHS superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G03070.1 Arabidopsis thaliana 0.43 Bax inhibitor-1 family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G03070.2 Arabidopsis thaliana 0.43 Bax inhibitor-1 family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G03190.1 Arabidopsis thaliana 0.31 RAD3-like DNA-binding helicase protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G03220.1 Arabidopsis thaliana 0.40 Eukaryotic aspartyl protease family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G03240.1 Arabidopsis thaliana 0.31 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G03250.1 Arabidopsis thaliana 0.35 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G03260.1 Arabidopsis thaliana 0.47 SNARE associated Golgi protein family ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G03420.1 Arabidopsis thaliana 0.71 transposable element gene ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G03445.1 Arabidopsis thaliana 0.77 Serine/threonine protein phosphatase family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G03495.1 Arabidopsis thaliana 0.41 HXXXD-type acyl-transferase family protein SRR847505:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847506:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G03506.1 Arabidopsis thaliana 0.40 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G03550.1 Arabidopsis thaliana 0.31 Secretory carrier membrane protein (SCAMP) family protein SRR364677:GFP sample AT1G03660.1 Arabidopsis thaliana 0.80 Ankyrin-repeat containing protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G03680.1 Arabidopsis thaliana 0.36 thioredoxin M-type 1 ERR229858:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G03700.1 Arabidopsis thaliana 0.57 Uncharacterised protein family (UPF0497) SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G03710.2 Arabidopsis thaliana 0.31 Cystatin/monellin superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G03743.1 Arabidopsis thaliana 0.58 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G03770.1 Arabidopsis thaliana 0.61 RING 1B SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G03770.2 Arabidopsis thaliana 0.32 RING 1B SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G03850.1 Arabidopsis thaliana 0.49 Glutaredoxin family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G03860.2 Arabidopsis thaliana 0.35 prohibitin 2 SRR1652314:atrtf2-1 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G03935.1 Arabidopsis thaliana 0.43 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT1G03940.1 Arabidopsis thaliana 0.46 HXXXD-type acyl-transferase family protein SRR847505:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847506:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G03960.1 Arabidopsis thaliana 0.44 Calcium-binding EF hand family protein SRR1652314:atrtf2-1 AT1G04020.1 Arabidopsis thaliana 0.36 breast cancer associated RING 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G04020.2 Arabidopsis thaliana 0.45 breast cancer associated RING 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G04040.1 Arabidopsis thaliana 0.88 HAD superfamily, subfamily IIIB acid phosphatase ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G04130.1 Arabidopsis thaliana 0.45 Tetratricopeptide repeat (TPR)-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G04171.1 Arabidopsis thaliana 0.92 Unknown SRR364677:GFP sample AT1G04280.1 Arabidopsis thaliana 0.47 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR364677:GFP sample AT1G04400.1 Arabidopsis thaliana 0.53 cryptochrome 2 SRR1652314:atrtf2-1 AT1G04445.1 Arabidopsis thaliana 0.32 C2H2-like zinc finger protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT1G04450.1 Arabidopsis thaliana 0.71 ROP-interactive CRIB motif-containing protein 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G04470.1 Arabidopsis thaliana 0.92 Protein of unknown function (DUF810) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G04500.1 Arabidopsis thaliana 0.49 CCT motif family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G04501.1 Arabidopsis thaliana 0.99 Unknown SRR1257403:GSM1371365: infected Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G04540.1 Arabidopsis thaliana 0.93 Calcium-dependent lipid-binding (CaLB domain) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G04570.1 Arabidopsis thaliana 0.46 Major facilitator superfamily protein SRR944365:GSM1197427: Cold-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT1G04600.1 Arabidopsis thaliana 0.55 myosin XI A SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G04610.1 Arabidopsis thaliana 0.62 YUCCA 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR1144843:WS 7 days on CIM AT1G04660.1 Arabidopsis thaliana 0.58 glycine-rich protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo AT1G04670.1 Arabidopsis thaliana 0.37 Unknown SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G04684.1 Arabidopsis thaliana 0.43 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G04700.1 Arabidopsis thaliana 0.51 PB1 domain-containing protein tyrosine kinase SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G04778.1 Arabidopsis thaliana 0.33 Unknown SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq SRR1105604:GSM1303977: PDAT_11-12_A; Arabidopsis thaliana; RNA-Seq ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G04790.1 Arabidopsis thaliana 0.33 RING/U-box superfamily protein SRR1652314:atrtf2-1 AT1G04810.1 Arabidopsis thaliana 0.56 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G04830.1 Arabidopsis thaliana 0.42 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G04860.1 Arabidopsis thaliana 0.40 ubiquitin-specific protease 2 SRR1652314:atrtf2-1 AT1G04890.1 Arabidopsis thaliana 0.34 Protein of unknown function, DUF593 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G04940.1 Arabidopsis thaliana 0.42 translocon at the inner envelope membrane of chloroplasts 20 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G04950.1 Arabidopsis thaliana 0.48 TATA BOX ASSOCIATED FACTOR II 59 SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G04960.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF1664) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G04960.2 Arabidopsis thaliana 0.87 Protein of unknown function (DUF1664) SRR1652315:prp8-7 AT1G04970.1 Arabidopsis thaliana 0.31 lipid-binding serum glycoprotein family protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G04970.2 Arabidopsis thaliana 0.36 lipid-binding serum glycoprotein family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G05020.1 Arabidopsis thaliana 0.69 ENTH/ANTH/VHS superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G05180.1 Arabidopsis thaliana 0.33 NAD(P)-binding Rossmann-fold superfamily protein SRR1652314:atrtf2-1 AT1G05200.1 Arabidopsis thaliana 0.34 glutamate receptor 3.4 SRR364678:nonGFP sample AT1G05200.2 Arabidopsis thaliana 0.37 glutamate receptor 3.4 SRR1652314:atrtf2-1 AT1G05220.1 Arabidopsis thaliana 0.31 Transmembrane protein 97, predicted SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G05380.1 Arabidopsis thaliana 0.35 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G05400.2 Arabidopsis thaliana 0.36 Unknown SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G05450.1 Arabidopsis thaliana 0.58 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G05510.1 Arabidopsis thaliana 0.32 Protein of unknown function (DUF1264) ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G05530.1 Arabidopsis thaliana 0.35 UDP-glucosyl transferase 75B2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G05560.1 Arabidopsis thaliana 0.45 UDP-glucosyltransferase 75B1 SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT1G05562.1 Arabidopsis thaliana 0.35 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G05570.1 Arabidopsis thaliana 0.31 callose synthase 1 SRR505743:GSM946221: roots; Arabidopsis thaliana; RNA-Seq SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G05577.1 Arabidopsis thaliana 0.31 Domain of unknown function (DUF966) SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G05580.1 Arabidopsis thaliana 0.93 cation/H+ exchanger 23 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G05580.2 Arabidopsis thaliana 0.83 cation/H+ exchanger 23 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G05590.1 Arabidopsis thaliana 0.76 beta-hexosaminidase 2 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G05600.2 Arabidopsis thaliana 0.39 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1652314:atrtf2-1 AT1G05650.1 Arabidopsis thaliana 0.37 Pectin lyase-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR1260032:P+_WT _R1 SRR1286088:P-_WT_R2 AT1G05660.1 Arabidopsis thaliana 0.74 Pectin lyase-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G05680.1 Arabidopsis thaliana 0.57 Uridine diphosphate glycosyltransferase 74E2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G05710.4 Arabidopsis thaliana 0.31 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1144845:be1-3 2 days on SIM AT1G05770.1 Arabidopsis thaliana 0.43 Mannose-binding lectin superfamily protein SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G05785.1 Arabidopsis thaliana 0.34 Got1/Sft2-like vescicle transport protein family SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G05800.1 Arabidopsis thaliana 0.53 alpha/beta-Hydrolases superfamily protein SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT1G05810.1 Arabidopsis thaliana 0.32 RAB GTPase homolog A5E SRR364677:GFP sample AT1G05820.1 Arabidopsis thaliana 0.91 SIGNAL PEPTIDE PEPTIDASE-LIKE 5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G05820.2 Arabidopsis thaliana 0.44 SIGNAL PEPTIDE PEPTIDASE-LIKE 5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G05830.1 Arabidopsis thaliana 0.63 trithorax-like protein 2 SRR1652314:atrtf2-1 AT1G05860.1 Arabidopsis thaliana 0.37 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G05870.2 Arabidopsis thaliana 0.35 Protein of unknown function (DUF1685) SRR978413:18O at 0mm 24hr AT1G05870.3 Arabidopsis thaliana 0.47 Protein of unknown function (DUF1685) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G05925.1 Arabidopsis thaliana 0.84 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G05960.1 Arabidopsis thaliana 0.43 ARM repeat superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G06020.1 Arabidopsis thaliana 0.37 pfkB-like carbohydrate kinase family protein SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G06030.1 Arabidopsis thaliana 0.78 pfkB-like carbohydrate kinase family protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G06120.1 Arabidopsis thaliana 0.95 Fatty acid desaturase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G06135.1 Arabidopsis thaliana 0.37 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G06137.1 Arabidopsis thaliana 0.61 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G06225.1 Arabidopsis thaliana 0.38 CLAVATA3/ESR-RELATED 3 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G06240.1 Arabidopsis thaliana 0.48 Protein of unknown function DUF455 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G06320.1 Arabidopsis thaliana 0.79 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G06330.1 Arabidopsis thaliana 0.36 Heavy metal transport/detoxification superfamily protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G06340.1 Arabidopsis thaliana 0.50 Plant Tudor-like protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G06440.1 Arabidopsis thaliana 0.66 Ubiquitin carboxyl-terminal hydrolase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G06470.2 Arabidopsis thaliana 0.33 Nucleotide/sugar transporter family protein SRR1652314:atrtf2-1 AT1G06475.1 Arabidopsis thaliana 0.35 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G06500.1 Arabidopsis thaliana 0.49 Unknown SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G06540.1 Arabidopsis thaliana 0.85 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G06560.1 Arabidopsis thaliana 0.34 NOL1/NOP2/sun family protein SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G06570.2 Arabidopsis thaliana 0.37 phytoene desaturation 1 SRR627669:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627670:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq AT1G06630.3 Arabidopsis thaliana 0.31 F-box/RNI-like superfamily protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G06640.3 Arabidopsis thaliana 0.42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G06645.1 Arabidopsis thaliana 0.61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR1652314:atrtf2-1 AT1G06650.1 Arabidopsis thaliana 0.40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G06700.1 Arabidopsis thaliana 0.59 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G06700.2 Arabidopsis thaliana 0.30 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G06720.1 Arabidopsis thaliana 0.33 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G06770.1 Arabidopsis thaliana 0.33 DREB2A-interacting protein 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G06820.1 Arabidopsis thaliana 0.44 carotenoid isomerase SRR1652314:atrtf2-1 AT1G06850.1 Arabidopsis thaliana 0.34 basic leucine-zipper 52 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G06890.2 Arabidopsis thaliana 0.68 nodulin MtN21 /EamA-like transporter family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G06890.3 Arabidopsis thaliana 0.33 nodulin MtN21 /EamA-like transporter family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G06920.1 Arabidopsis thaliana 0.55 ovate family protein 4 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G06923.1 Arabidopsis thaliana 0.54 Unknown SRR364677:GFP sample AT1G06970.1 Arabidopsis thaliana 0.75 cation/hydrogen exchanger 14 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G07051.1 Arabidopsis thaliana 0.61 MIR847a; miRNA SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A AT1G07120.1 Arabidopsis thaliana 0.47 Unknown ERR588043:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588048:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G07150.1 Arabidopsis thaliana 0.35 mitogen-activated protein kinase kinase kinase 13 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G07200.1 Arabidopsis thaliana 0.41 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G07200.2 Arabidopsis thaliana 0.41 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries AT1G07280.3 Arabidopsis thaliana 0.74 Tetratricopeptide repeat (TPR)-like superfamily protein SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT1G07290.1 Arabidopsis thaliana 0.66 golgi nucleotide sugar transporter 2 SRR364678:nonGFP sample AT1G07320.4 Arabidopsis thaliana 0.59 ribosomal protein L4 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G07350.1 Arabidopsis thaliana 0.42 RNA-binding (RRM/RBD/RNP motifs) family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G07370.1 Arabidopsis thaliana 0.38 proliferating cellular nuclear antigen 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G07400.1 Arabidopsis thaliana 0.40 HSP20-like chaperones superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G07410.1 Arabidopsis thaliana 0.34 RAB GTPase homolog A2B SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G07470.1 Arabidopsis thaliana 0.43 Transcription factor IIA, alpha/beta subunit ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G07476.1 Arabidopsis thaliana 0.52 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G07500.1 Arabidopsis thaliana 0.42 Unknown SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq AT1G07520.1 Arabidopsis thaliana 0.31 GRAS family transcription factor SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G07550.1 Arabidopsis thaliana 0.42 Leucine-rich repeat protein kinase family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G07560.1 Arabidopsis thaliana 0.40 Leucine-rich repeat protein kinase family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G07630.1 Arabidopsis thaliana 0.30 pol-like 5 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G07730.2 Arabidopsis thaliana 0.37 Disease resistance-responsive (dirigent-like protein) family protein SRR1260032:P+_WT _R1 SRR1260038:P-_WT_R1 SRR1286088:P-_WT_R2 AT1G07745.2 Arabidopsis thaliana 0.55 homolog of RAD51 D SRR1652314:atrtf2-1 AT1G07747.1 Arabidopsis thaliana 0.43 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR364677:GFP sample AT1G07880.2 Arabidopsis thaliana 0.38 Protein kinase superfamily protein SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT1G07885.1 Arabidopsis thaliana 0.37 Unknown SRR1290852:Biological replicate3 for RNA-seq_data of WT AT1G07890.7 Arabidopsis thaliana 0.48 ascorbate peroxidase 1 SRR446030:Avr.1h.B AT1G07900.1 Arabidopsis thaliana 0.51 LOB domain-containing protein 1 SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G08000.2 Arabidopsis thaliana 0.66 GATA transcription factor 10 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G08005.1 Arabidopsis thaliana 0.60 Unknown SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT1G08030.1 Arabidopsis thaliana 0.37 tyrosylprotein sulfotransferase SRR1652314:atrtf2-1 SRR1144843:WS 7 days on CIM SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G08032.1 Arabidopsis thaliana 0.88 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G08065.1 Arabidopsis thaliana 0.34 alpha carbonic anhydrase 5 SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT1G08080.1 Arabidopsis thaliana 0.75 alpha carbonic anhydrase 7 SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT1G08100.1 Arabidopsis thaliana 0.32 nitrate transporter 2.2 SRR671949:GSM1077435: Root_polyA_KNO3_Treatment_rep2; Arabidopsis thaliana; RNA-Seq AT1G08110.2 Arabidopsis thaliana 0.36 lactoylglutathione lyase family protein / glyoxalase I family protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G08115.1 Arabidopsis thaliana 0.32 snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G08125.3 Arabidopsis thaliana 0.52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G08135.1 Arabidopsis thaliana 0.69 cation/H+ exchanger 6B SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G08140.1 Arabidopsis thaliana 0.93 cation/H+ exchanger 6A SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G08150.1 Arabidopsis thaliana 0.92 Cation/hydrogen exchanger family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G08165.1 Arabidopsis thaliana 0.40 Unknown SRR420816:phosphate-deficient sample #1 SRR420817:phosphate-deficient sample #2 SRR420818:phosphate-deficient sample #3 AT1G08170.1 Arabidopsis thaliana 0.59 Histone superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G08200.1 Arabidopsis thaliana 0.35 UDP-D-apiose/UDP-D-xylose synthase 2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G08220.2 Arabidopsis thaliana 0.36 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G08290.1 Arabidopsis thaliana 0.42 WIP domain protein 3 SRR1144842:be1-3 7 days on CIM AT1G08340.1 Arabidopsis thaliana 0.49 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain SRR364677:GFP sample AT1G08400.1 Arabidopsis thaliana 0.44 RINT-1 / TIP-1 family SRR1652314:atrtf2-1 AT1G08460.1 Arabidopsis thaliana 0.39 histone deacetylase 8 SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G08465.1 Arabidopsis thaliana 0.33 Plant-specific transcription factor YABBY family protein SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT1G08500.1 Arabidopsis thaliana 0.42 early nodulin-like protein 18 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G08510.1 Arabidopsis thaliana 0.33 fatty acyl-ACP thioesterases B SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G08520.1 Arabidopsis thaliana 0.30 ALBINA 1 SRR1652314:atrtf2-1 AT1G08540.1 Arabidopsis thaliana 0.31 RNApolymerase sigma subunit 2 SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G08550.1 Arabidopsis thaliana 0.41 non-photochemical quenching 1 SRR1652314:atrtf2-1 AT1G08600.3 Arabidopsis thaliana 0.60 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G08600.4 Arabidopsis thaliana 0.44 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G08630.1 Arabidopsis thaliana 0.32 threonine aldolase 1 SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT1G08630.4 Arabidopsis thaliana 0.53 threonine aldolase 1 SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT1G08650.2 Arabidopsis thaliana 0.33 phosphoenolpyruvate carboxylase kinase 1 SRR1260035:P-_hps7_R2 AT1G08680.1 Arabidopsis thaliana 0.46 ARF GAP-like zinc finger-containing protein ZIGA4 SRR1652314:atrtf2-1 AT1G08695.1 Arabidopsis thaliana 0.38 SCR-like 3 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G08720.1 Arabidopsis thaliana 0.34 Protein kinase superfamily protein SRR1652314:atrtf2-1 AT1G08750.3 Arabidopsis thaliana 0.33 Peptidase C13 family ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G08800.1 Arabidopsis thaliana 0.36 Protein of unknown function, DUF593 SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT1G08800.2 Arabidopsis thaliana 0.51 Protein of unknown function, DUF593 SRR364677:GFP sample SRR364678:nonGFP sample AT1G08830.1 Arabidopsis thaliana 0.30 copper/zinc superoxide dismutase 1 SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression AT1G08845.2 Arabidopsis thaliana 0.41 Ribosomal L18p/L5e family protein SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A AT1G08860.1 Arabidopsis thaliana 0.73 Calcium-dependent phospholipid-binding Copine family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G08900.2 Arabidopsis thaliana 0.35 Major facilitator superfamily protein SRR1652314:atrtf2-1 AT1G08960.1 Arabidopsis thaliana 0.36 cation exchanger 11 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G08970.4 Arabidopsis thaliana 0.33 nuclear factor Y, subunit C9 SRR1652314:atrtf2-1 AT1G08985.1 Arabidopsis thaliana 0.32 AP2/B3-like transcriptional factor family protein SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G08990.1 Arabidopsis thaliana 0.40 plant glycogenin-like starch initiation protein 5 SRR364677:GFP sample AT1G09000.1 Arabidopsis thaliana 0.35 NPK1-related protein kinase 1 SRR364677:GFP sample AT1G09026.1 Arabidopsis thaliana 0.84 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G09060.2 Arabidopsis thaliana 0.36 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase SRR1652314:atrtf2-1 AT1G09090.2 Arabidopsis thaliana 0.49 respiratory burst oxidase homolog B SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G09100.1 Arabidopsis thaliana 0.40 26S proteasome AAA-ATPase subunit RPT5B SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G09110.1 Arabidopsis thaliana 0.66 pre-tRNA SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR499987:sig6 replicate 1 SRR499988:gun1/sig6 replicate 1 SRR499989:gun1/sig6 replicate 2 AT1G09140.1 Arabidopsis thaliana 0.59 SERINE-ARGININE PROTEIN 30 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G09155.1 Arabidopsis thaliana 0.73 phloem protein 2-B15 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G09157.1 Arabidopsis thaliana 0.58 Protein of unknown function (DUF679) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G09170.1 Arabidopsis thaliana 0.65 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain SRR364677:GFP sample AT1G09195.1 Arabidopsis thaliana 0.32 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G09245.1 Arabidopsis thaliana 0.32 Plant self-incompatibility protein S1 family SRR1046862:GSM1287127: Arabidopsis thaliana Ler-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR314818:GSM764082: Can_0_floral_bud_validation_rep1 AT1G09270.1 Arabidopsis thaliana 0.33 importin alpha isoform 4 SRR364677:GFP sample AT1G09270.3 Arabidopsis thaliana 0.31 importin alpha isoform 4 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G09370.1 Arabidopsis thaliana 0.37 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G09460.1 Arabidopsis thaliana 0.31 Carbohydrate-binding X8 domain superfamily protein SRR1144843:WS 7 days on CIM AT1G09500.3 Arabidopsis thaliana 0.35 NAD(P)-binding Rossmann-fold superfamily protein SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G09510.1 Arabidopsis thaliana 0.57 NAD(P)-binding Rossmann-fold superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G09560.1 Arabidopsis thaliana 0.38 germin-like protein 5 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G09575.1 Arabidopsis thaliana 0.39 Protein of unknown function (DUF607) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G09600.1 Arabidopsis thaliana 0.50 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G09740.1 Arabidopsis thaliana 0.35 Adenine nucleotide alpha hydrolases-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G09812.1 Arabidopsis thaliana 0.40 Unknown SRR1144845:be1-3 2 days on SIM AT1G09932.1 Arabidopsis thaliana 0.59 Phosphoglycerate mutase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G09932.2 Arabidopsis thaliana 0.39 Phosphoglycerate mutase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G09935.1 Arabidopsis thaliana 0.72 Phosphoglycerate mutase family protein SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT1G09950.1 Arabidopsis thaliana 0.35 RESPONSE TO ABA AND SALT 1 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G09980.1 Arabidopsis thaliana 0.30 Putative serine esterase family protein SRR1652314:atrtf2-1 AT1G09995.1 Arabidopsis thaliana 0.46 DNA repair DEAD helicase RAD3/XP-D subfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G10010.1 Arabidopsis thaliana 0.37 amino acid permease 8 SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G10050.1 Arabidopsis thaliana 0.49 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein SRR364677:GFP sample AT1G10160.1 Arabidopsis thaliana 0.30 transposable element gene SRR584119:GSM1017160: NMD_MOCK_R1; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample SRR364678:nonGFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G10170.1 Arabidopsis thaliana 0.38 NF-X-like 1 SRR364677:GFP sample AT1G10220.2 Arabidopsis thaliana 0.57 Unknown SRR1652317:atrtf2-2Ho AT1G10320.1 Arabidopsis thaliana 0.36 Zinc finger C-x8-C-x5-C-x3-H type family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT1G10430.1 Arabidopsis thaliana 0.31 protein phosphatase 2A-2 SRR1652314:atrtf2-1 AT1G10460.1 Arabidopsis thaliana 0.34 germin-like protein 7 SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT1G10560.1 Arabidopsis thaliana 0.39 plant U-box 18 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G10600.2 Arabidopsis thaliana 0.73 associated molecule with the SH3 domain of STAM 2 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G10620.1 Arabidopsis thaliana 0.93 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G10652.1 Arabidopsis thaliana 0.74 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT1G10657.2 Arabidopsis thaliana 0.48 Plant protein 1589 of unknown function SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G10657.3 Arabidopsis thaliana 0.57 Plant protein 1589 of unknown function SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G10660.1 Arabidopsis thaliana 0.59 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G10660.2 Arabidopsis thaliana 0.56 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G10660.3 Arabidopsis thaliana 0.61 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G10690.1 Arabidopsis thaliana 0.37 Unknown SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G10700.1 Arabidopsis thaliana 0.43 phosphoribosyl pyrophosphate (PRPP) synthase 3 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G10730.1 Arabidopsis thaliana 0.36 Clathrin adaptor complexes medium subunit family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G10740.1 Arabidopsis thaliana 0.30 alpha/beta-Hydrolases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G10740.2 Arabidopsis thaliana 0.43 alpha/beta-Hydrolases superfamily protein SRR1652314:atrtf2-1 AT1G10750.1 Arabidopsis thaliana 0.34 Protein of Unknown Function (DUF239) SRR1144843:WS 7 days on CIM AT1G10770.1 Arabidopsis thaliana 0.93 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G10810.1 Arabidopsis thaliana 0.36 NAD(P)-linked oxidoreductase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G10830.1 Arabidopsis thaliana 0.37 15-cis-zeta-carotene isomerase SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G10865.2 Arabidopsis thaliana 0.38 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G10990.1 Arabidopsis thaliana 0.55 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G11000.1 Arabidopsis thaliana 0.41 Seven transmembrane MLO family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G11040.1 Arabidopsis thaliana 0.42 HSP40/DnaJ peptide-binding protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G11050.1 Arabidopsis thaliana 0.52 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G11055.1 Arabidopsis thaliana 0.55 Unknown SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G11100.2 Arabidopsis thaliana 0.52 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related SRR364677:GFP sample SRR364678:nonGFP sample AT1G11112.1 Arabidopsis thaliana 0.38 Unknown SRR1105581:GSM1303954: fae1_7-8_B; Arabidopsis thaliana; RNA-Seq SRR1105582:GSM1303955: fae1_7-8_C; Arabidopsis thaliana; RNA-Seq AT1G11270.1 Arabidopsis thaliana 0.62 F-box and associated interaction domains-containing protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G11280.1 Arabidopsis thaliana 0.48 S-locus lectin protein kinase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G11330.1 Arabidopsis thaliana 0.30 S-locus lectin protein kinase family protein SRR314816:GSM764080: Can_0_seedling_validation_rep1 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G11340.1 Arabidopsis thaliana 0.77 S-locus lectin protein kinase family protein SRR826412:Sample Control BR5 AT1G11350.1 Arabidopsis thaliana 0.32 S-domain-1 13 SRR988549:GSM1232785: WT_mRNA; Arabidopsis thaliana; RNA-Seq AT1G11360.2 Arabidopsis thaliana 0.32 Adenine nucleotide alpha hydrolases-like superfamily protein SRR627679:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq AT1G11360.3 Arabidopsis thaliana 0.31 Adenine nucleotide alpha hydrolases-like superfamily protein SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G11482.1 Arabidopsis thaliana 0.59 Unknown SRR1144842:be1-3 7 days on CIM AT1G11490.1 Arabidopsis thaliana 0.85 zinc finger (C2H2 type) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G11540.1 Arabidopsis thaliana 0.38 Sulfite exporter TauE/SafE family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G11572.1 Arabidopsis thaliana 0.56 Plant thionin family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G11590.1 Arabidopsis thaliana 0.35 Plant invertase/pectin methylesterase inhibitor superfamily SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G11595.1 Arabidopsis thaliana 0.71 Unknown SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G11650.1 Arabidopsis thaliana 0.60 RNA-binding (RRM/RBD/RNP motifs) family protein SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT1G11655.1 Arabidopsis thaliana 0.61 Unknown SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G11684.1 Arabidopsis thaliana 0.38 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G11735.1 Arabidopsis thaliana 0.66 MIR171B; miRNA SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G11755.1 Arabidopsis thaliana 0.36 Undecaprenyl pyrophosphate synthetase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G11765.1 Arabidopsis thaliana 0.79 Plant self-incompatibility protein S1 family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G11770.1 Arabidopsis thaliana 0.87 FAD-binding Berberine family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G11780.1 Arabidopsis thaliana 0.74 oxidoreductase, 2OG-Fe(II) oxygenase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G11840.4 Arabidopsis thaliana 0.58 glyoxalase I homolog SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G11840.6 Arabidopsis thaliana 0.32 glyoxalase I homolog SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G11850.4 Arabidopsis thaliana 0.57 Unknown SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G11870.3 Arabidopsis thaliana 0.44 Seryl-tRNA synthetase SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT1G11940.1 Arabidopsis thaliana 0.33 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G11950.1 Arabidopsis thaliana 0.51 Transcription factor jumonji (jmjC) domain-containing protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G11980.1 Arabidopsis thaliana 0.58 ubiquitin-related protein 3 SRR1652315:prp8-7 AT1G11990.1 Arabidopsis thaliana 0.74 O-fucosyltransferase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G12013.1 Arabidopsis thaliana 0.34 SNOR111; snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G12015.1 Arabidopsis thaliana 0.36 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G12030.1 Arabidopsis thaliana 0.41 Protein of unknown function (DUF506) SRR776586:GSM1099201: spl7_cu+; Arabidopsis thaliana; RNA-Seq AT1G12060.1 Arabidopsis thaliana 0.32 BCL-2-associated athanogene 5 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G12130.1 Arabidopsis thaliana 0.80 Flavin-binding monooxygenase family protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G12160.1 Arabidopsis thaliana 0.50 Flavin-binding monooxygenase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G12180.1 Arabidopsis thaliana 0.55 Unknown SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT1G12211.1 Arabidopsis thaliana 0.64 Unknown SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G12240.1 Arabidopsis thaliana 0.67 Glycosyl hydrolases family 32 protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G12250.2 Arabidopsis thaliana 0.69 Pentapeptide repeat-containing protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G12320.1 Arabidopsis thaliana 0.46 Protein of unknown function (DUF1442) SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G12423.1 Arabidopsis thaliana 0.82 Unknown SRR1046895:GSM1287160: Arabidopsis thaliana Zu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR420814:control sample #2 AT1G12440.2 Arabidopsis thaliana 0.67 A20/AN1-like zinc finger family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G12450.1 Arabidopsis thaliana 0.64 SNARE associated Golgi protein family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G12451.1 Arabidopsis thaliana 0.65 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G12480.1 Arabidopsis thaliana 0.43 C4-dicarboxylate transporter/malic acid transport protein SRR826412:Sample Control BR5 AT1G12500.1 Arabidopsis thaliana 0.54 Nucleotide-sugar transporter family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G12520.1 Arabidopsis thaliana 0.31 copper chaperone for SOD1 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G12520.2 Arabidopsis thaliana 0.59 copper chaperone for SOD1 SRR1652314:atrtf2-1 SRR1652317:atrtf2-2Ho AT1G12560.1 Arabidopsis thaliana 0.59 expansin A7 SRR364677:GFP sample AT1G12580.1 Arabidopsis thaliana 0.41 phosphoenolpyruvate carboxylase-related kinase 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G12650.1 Arabidopsis thaliana 0.46 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT1G12730.1 Arabidopsis thaliana 0.42 GPI transamidase subunit PIG-U SRR1652314:atrtf2-1 AT1G12740.1 Arabidopsis thaliana 0.33 cytochrome P450, family 87, subfamily A, polypeptide 2 SRR364678:nonGFP sample SRR1144843:WS 7 days on CIM AT1G12900.2 Arabidopsis thaliana 0.52 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 SRR515074:polyA RNA sequencing from 7d old seedlings AT1G12938.1 Arabidopsis thaliana 0.40 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G12950.1 Arabidopsis thaliana 0.66 root hair specific 2 SRR364677:GFP sample AT1G13130.1 Arabidopsis thaliana 0.31 Cellulase (glycosyl hydrolase family 5) protein SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq AT1G13140.2 Arabidopsis thaliana 0.41 cytochrome P450, family 86, subfamily C, polypeptide 3 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G13180.1 Arabidopsis thaliana 0.41 Actin-like ATPase superfamily protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G13195.1 Arabidopsis thaliana 0.63 RING/U-box superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G13220.1 Arabidopsis thaliana 0.30 nuclear matrix constituent protein-related SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. SRR1652314:atrtf2-1 AT1G13260.1 Arabidopsis thaliana 0.33 related to ABI3/VP1 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G13360.1 Arabidopsis thaliana 0.37 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G13360.2 Arabidopsis thaliana 0.40 Unknown SRR513741:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 1 AT1G13400.1 Arabidopsis thaliana 0.59 C2H2 and C2HC zinc fingers superfamily protein SRR1144845:be1-3 2 days on SIM AT1G13448.1 Arabidopsis thaliana 0.34 other RNA SRR1584460:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G13450.3 Arabidopsis thaliana 0.73 Homeodomain-like superfamily protein SRR1652314:atrtf2-1 AT1G13480.1 Arabidopsis thaliana 0.53 Protein of unknown function (DUF1262) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G13490.1 Arabidopsis thaliana 0.52 Protein of unknown function (DUF1262) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G13500.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF1262) SRR364677:GFP sample AT1G13530.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF1262) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G13580.1 Arabidopsis thaliana 0.32 LAG1 longevity assurance homolog 3 SRR307074:GSM756824: Ler x Col endosperm RNA-seq AT1G13580.2 Arabidopsis thaliana 0.54 LAG1 longevity assurance homolog 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G13600.1 Arabidopsis thaliana 0.52 basic leucine-zipper 58 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G13607.1 Arabidopsis thaliana 0.32 Defensin-like (DEFL) family protein SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G13608.1 Arabidopsis thaliana 0.62 Defensin-like (DEFL) family protein SRR1257392:GSM1371354: infected Col0 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT1G13609.1 Arabidopsis thaliana 0.32 Defensin-like (DEFL) family protein SRR1652315:prp8-7 AT1G13609.2 Arabidopsis thaliana 0.36 Defensin-like (DEFL) family protein SRR1652314:atrtf2-1 AT1G13610.1 Arabidopsis thaliana 0.39 alpha/beta-Hydrolases superfamily protein SRR1652315:prp8-7 AT1G13620.1 Arabidopsis thaliana 0.50 Unknown SRR1144843:WS 7 days on CIM AT1G13670.1 Arabidopsis thaliana 0.36 Unknown SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G13750.1 Arabidopsis thaliana 0.50 Purple acid phosphatases superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G13770.2 Arabidopsis thaliana 0.54 Protein of unknown function, DUF647 SRR1652314:atrtf2-1 AT1G13790.1 Arabidopsis thaliana 0.45 XH/XS domain-containing protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G13870.1 Arabidopsis thaliana 0.42 calmodulin binding;purine nucleotide binding SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G13930.2 Arabidopsis thaliana 0.78 Unknown SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT1G13940.1 Arabidopsis thaliana 0.31 Plant protein of unknown function (DUF863) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G13950.1 Arabidopsis thaliana 0.40 eukaryotic elongation factor 5A-1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G13970.1 Arabidopsis thaliana 0.89 Protein of unknown function (DUF1336) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G13990.2 Arabidopsis thaliana 0.32 Unknown SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 AT1G14020.1 Arabidopsis thaliana 0.42 O-fucosyltransferase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G14040.1 Arabidopsis thaliana 0.48 EXS (ERD1/XPR1/SYG1) family protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G14071.1 Arabidopsis thaliana 0.38 MIR830a; miRNA SRR1576069:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT1G14080.1 Arabidopsis thaliana 0.48 fucosyltransferase 6 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G14140.1 Arabidopsis thaliana 0.31 Mitochondrial substrate carrier family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G14170.3 Arabidopsis thaliana 0.55 RNA-binding KH domain-containing protein SRR364677:GFP sample AT1G14185.1 Arabidopsis thaliana 0.34 Glucose-methanol-choline (GMC) oxidoreductase family protein SRR331224:arabidopsis root in control condition SRR1524941:iron-deficiency sample #1 SRR1524945:iron-deficiency sample #2 SRR1524946:iron-deficiency sample #3 SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G14190.1 Arabidopsis thaliana 0.37 Glucose-methanol-choline (GMC) oxidoreductase family protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G14200.1 Arabidopsis thaliana 0.43 RING/U-box superfamily protein SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT1G14205.1 Arabidopsis thaliana 0.42 Ribosomal L18p/L5e family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G14220.1 Arabidopsis thaliana 0.42 Ribonuclease T2 family protein SRR364677:GFP sample AT1G14225.1 Arabidopsis thaliana 0.31 Unknown SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1046934:GSM1287192: Tsu-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT1G14230.1 Arabidopsis thaliana 0.38 GDA1/CD39 nucleoside phosphatase family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G14240.1 Arabidopsis thaliana 0.84 GDA1/CD39 nucleoside phosphatase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G14260.1 Arabidopsis thaliana 0.31 RING/FYVE/PHD zinc finger superfamily protein SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G14270.2 Arabidopsis thaliana 0.33 CAAX amino terminal protease family protein SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR907287:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G14270.3 Arabidopsis thaliana 0.36 CAAX amino terminal protease family protein SRR1652314:atrtf2-1 AT1G14270.4 Arabidopsis thaliana 0.31 CAAX amino terminal protease family protein SRR1652315:prp8-7 AT1G14350.2 Arabidopsis thaliana 0.63 Duplicated homeodomain-like superfamily protein SRR1144843:WS 7 days on CIM AT1G14390.1 Arabidopsis thaliana 0.42 Leucine-rich repeat protein kinase family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G14400.2 Arabidopsis thaliana 0.42 ubiquitin carrier protein 1 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G14420.1 Arabidopsis thaliana 0.91 Pectate lyase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G14430.1 Arabidopsis thaliana 0.45 glyoxal oxidase-related protein SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT1G14480.1 Arabidopsis thaliana 0.37 Ankyrin repeat family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G14480.2 Arabidopsis thaliana 0.46 Ankyrin repeat family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G14520.1 Arabidopsis thaliana 0.43 myo-inositol oxygenase 1 SRR1058110:GSM1297912: at-seed-ler_wt_x_col_wt 1; Arabidopsis thaliana; RNA-Seq SRR1058111:GSM1297913: at-seed-ler_wt_x_col_wt 2; Arabidopsis thaliana; RNA-Seq SRR1058112:GSM1297914: at-seed-ler_wt_x_col_wt 3; Arabidopsis thaliana; RNA-Seq SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT1G14540.1 Arabidopsis thaliana 0.69 Peroxidase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G14550.1 Arabidopsis thaliana 0.33 Peroxidase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G14580.1 Arabidopsis thaliana 0.68 C2H2-like zinc finger protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G14630.1 Arabidopsis thaliana 0.59 Unknown SRR1144845:be1-3 2 days on SIM AT1G14650.2 Arabidopsis thaliana 0.33 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G14685.3 Arabidopsis thaliana 0.32 basic pentacysteine 2 SRR1652314:atrtf2-1 AT1G14686.1 Arabidopsis thaliana 0.56 ENTH/ANTH/VHS superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G14720.1 Arabidopsis thaliana 0.45 xyloglucan endotransglucosylase/hydrolase 28 SRR1652314:atrtf2-1 AT1G14770.2 Arabidopsis thaliana 0.56 RING/FYVE/PHD zinc finger superfamily protein SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G14930.1 Arabidopsis thaliana 0.32 Polyketide cyclase/dehydrase and lipid transport superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts SRR402998:GSM867678: bzr1-1D_PAC_PPZ; Arabidopsis thaliana; RNA-Seq SRR515493:GSM951968: bzr1-1D_PAC_PPZ repeat; Arabidopsis thaliana; RNA-Seq AT1G14940.1 Arabidopsis thaliana 0.70 Polyketide cyclase/dehydrase and lipid transport superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G14960.1 Arabidopsis thaliana 0.31 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR1046911:GSM1287169: Ct-1 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G14980.1 Arabidopsis thaliana 0.34 chaperonin 10 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq AT1G14990.2 Arabidopsis thaliana 0.57 Unknown SRR1508371:GSM1429455: Can-0-IP1; Arabidopsis thaliana; RNA-Seq SRR1508372:GSM1429455: Can-0-IP1; Arabidopsis thaliana; RNA-Seq SRR1508375:GSM1429457: Can-0-IP2; Arabidopsis thaliana; RNA-Seq SRR1508376:GSM1429457: Can-0-IP2; Arabidopsis thaliana; RNA-Seq AT1G15002.1 Arabidopsis thaliana 0.32 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq AT1G15045.1 Arabidopsis thaliana 0.62 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT1G15080.1 Arabidopsis thaliana 0.37 lipid phosphate phosphatase 2 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G15110.1 Arabidopsis thaliana 0.37 phosphatidyl serine synthase family protein SRR364677:GFP sample AT1G15190.1 Arabidopsis thaliana 0.39 Fasciclin-like arabinogalactan family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT1G15200.4 Arabidopsis thaliana 0.31 protein-protein interaction regulator family protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G15220.1 Arabidopsis thaliana 0.36 cytochrome c biogenesis protein family ERR229836:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G15220.2 Arabidopsis thaliana 0.32 cytochrome c biogenesis protein family ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G15310.1 Arabidopsis thaliana 0.45 signal recognition particle 54 kDa subunit SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G15330.1 Arabidopsis thaliana 0.47 Cystathionine beta-synthase (CBS) protein SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT1G15350.1 Arabidopsis thaliana 0.52 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G15380.2 Arabidopsis thaliana 0.60 Lactoylglutathione lyase / glyoxalase I family protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G15385.1 Arabidopsis thaliana 0.69 Unknown SRR364678:nonGFP sample AT1G15415.1 Arabidopsis thaliana 0.31 Unknown SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G15470.1 Arabidopsis thaliana 0.54 Transducin/WD40 repeat-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G15520.1 Arabidopsis thaliana 0.45 pleiotropic drug resistance 12 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G15580.1 Arabidopsis thaliana 0.43 indole-3-acetic acid inducible 5 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G15610.1 Arabidopsis thaliana 0.77 Unknown SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G15620.1 Arabidopsis thaliana 0.61 Unknown SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G15630.1 Arabidopsis thaliana 0.50 Unknown SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G15640.1 Arabidopsis thaliana 0.34 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G15710.1 Arabidopsis thaliana 0.52 prephenate dehydrogenase family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G15720.1 Arabidopsis thaliana 0.30 TRF-like 5 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G15757.1 Arabidopsis thaliana 0.36 Molecular chaperone Hsp40/DnaJ family protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G15772.1 Arabidopsis thaliana 0.50 Unknown SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G15830.1 Arabidopsis thaliana 0.31 Unknown ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G15900.1 Arabidopsis thaliana 0.31 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G15920.1 Arabidopsis thaliana 0.60 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G15920.2 Arabidopsis thaliana 0.39 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G15930.1 Arabidopsis thaliana 0.67 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein SRR345562:GSM798296: mRNASeq_WT_rep2 AT1G16010.2 Arabidopsis thaliana 0.57 magnesium transporter 2 SRR1652314:atrtf2-1 AT1G16022.1 Arabidopsis thaliana 0.66 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G16025.1 Arabidopsis thaliana 0.84 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G16030.1 Arabidopsis thaliana 0.80 heat shock protein 70B SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G16130.1 Arabidopsis thaliana 0.78 wall associated kinase-like 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G16150.1 Arabidopsis thaliana 0.34 wall associated kinase-like 4 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G16230.1 Arabidopsis thaliana 0.44 Target SNARE coiled-coil domain protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G16260.2 Arabidopsis thaliana 0.36 Wall-associated kinase family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G16290.1 Arabidopsis thaliana 0.48 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G16330.1 Arabidopsis thaliana 0.31 cyclin b3;1 SRR1144843:WS 7 days on CIM AT1G16340.4 Arabidopsis thaliana 0.40 Aldolase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G16360.1 Arabidopsis thaliana 0.56 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G16410.1 Arabidopsis thaliana 0.38 cytochrome p450 79f1 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing AT1G16440.1 Arabidopsis thaliana 0.34 root hair specific 3 SRR364677:GFP sample AT1G16450.1 Arabidopsis thaliana 0.34 pre-tRNA SRR499986:gun1 replicate 1 SRR499987:sig6 replicate 1 AT1G16490.1 Arabidopsis thaliana 0.33 myb domain protein 58 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT1G16540.1 Arabidopsis thaliana 0.40 molybdenum cofactor sulfurase (LOS5) (ABA3) SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G16610.3 Arabidopsis thaliana 0.39 arginine/serine-rich 45 SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G16640.1 Arabidopsis thaliana 0.30 AP2/B3-like transcriptional factor family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G16650.1 Arabidopsis thaliana 0.36 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G16670.1 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT1G16710.1 Arabidopsis thaliana 0.43 histone acetyltransferase of the CBP family 12 SRR1652314:atrtf2-1 AT1G16760.1 Arabidopsis thaliana 0.40 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G16770.1 Arabidopsis thaliana 0.34 Unknown ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G16820.1 Arabidopsis thaliana 0.37 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G16840.2 Arabidopsis thaliana 0.40 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G16840.3 Arabidopsis thaliana 0.37 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G16858.1 Arabidopsis thaliana 0.37 conserved peptide upstream open reading frame 55 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G16890.1 Arabidopsis thaliana 0.34 ubiquitin-conjugating enzyme 36 SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G16905.1 Arabidopsis thaliana 0.76 Curculin-like (mannose-binding) lectin family protein SRR364678:nonGFP sample AT1G16910.1 Arabidopsis thaliana 0.67 Protein of unknown function (DUF640) SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT1G16950.1 Arabidopsis thaliana 0.75 Unknown SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G16960.1 Arabidopsis thaliana 0.69 Ubiquitin domain-containing protein SRR826412:Sample Control BR5 AT1G17020.1 Arabidopsis thaliana 0.32 senescence-related gene 1 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G17110.2 Arabidopsis thaliana 0.30 ubiquitin-specific protease 15 SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G17130.1 Arabidopsis thaliana 0.45 Family of unknown function (DUF572) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G17170.1 Arabidopsis thaliana 0.70 glutathione S-transferase TAU 24 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G17180.1 Arabidopsis thaliana 0.62 glutathione S-transferase TAU 25 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G17255.1 Arabidopsis thaliana 0.34 other RNA SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G17280.2 Arabidopsis thaliana 0.42 ubiquitin-conjugating enzyme 34 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G17330.1 Arabidopsis thaliana 0.36 Metal-dependent phosphohydrolase SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G17350.2 Arabidopsis thaliana 0.72 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G17380.1 Arabidopsis thaliana 0.37 jasmonate-zim-domain protein 5 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G17410.1 Arabidopsis thaliana 0.39 Nucleoside diphosphate kinase family protein SRR513744:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G17460.1 Arabidopsis thaliana 0.45 TRF-like 3 SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G17470.1 Arabidopsis thaliana 0.34 developmentally regulated G-protein 1 SRR1652314:atrtf2-1 AT1G17480.1 Arabidopsis thaliana 0.32 IQ-domain 7 SRR1104134:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT1G17540.1 Arabidopsis thaliana 0.94 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G17570.1 Arabidopsis thaliana 0.32 pre-tRNA SRR499989:gun1/sig6 replicate 2 SRR671946:GSM1077432: Root_polyA_KCl_Control_rep1; Arabidopsis thaliana; RNA-Seq AT1G17610.1 Arabidopsis thaliana 0.39 Disease resistance protein (TIR-NBS class) ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G17745.2 Arabidopsis thaliana 0.33 D-3-phosphoglycerate dehydrogenase SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G17790.1 Arabidopsis thaliana 0.31 DNA-binding bromodomain-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G17870.1 Arabidopsis thaliana 0.82 ethylene-dependent gravitropism-deficient and yellow-green-like 3 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G17890.1 Arabidopsis thaliana 0.43 NAD(P)-binding Rossmann-fold superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G17890.3 Arabidopsis thaliana 0.54 NAD(P)-binding Rossmann-fold superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G17940.1 Arabidopsis thaliana 0.31 Endosomal targeting BRO1-like domain-containing protein SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G17950.1 Arabidopsis thaliana 0.43 myb domain protein 52 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G17980.1 Arabidopsis thaliana 0.37 poly(A) polymerase 1 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G18030.2 Arabidopsis thaliana 0.77 Protein phosphatase 2C family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G18060.1 Arabidopsis thaliana 0.32 Unknown SRR1508379:GSM1429459: Hen-16-IP1; Arabidopsis thaliana; RNA-Seq SRR1508380:GSM1429459: Hen-16-IP1; Arabidopsis thaliana; RNA-Seq SRR1508383:GSM1429461: Hen-16-IP2; Arabidopsis thaliana; RNA-Seq SRR1508384:GSM1429461: Hen-16-IP2; Arabidopsis thaliana; RNA-Seq AT1G18150.2 Arabidopsis thaliana 0.51 Protein kinase superfamily protein SRR364677:GFP sample AT1G18200.1 Arabidopsis thaliana 0.59 RAB GTPase homolog A6B SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G18310.1 Arabidopsis thaliana 0.50 glycosyl hydrolase family 81 protein SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G18320.1 Arabidopsis thaliana 0.39 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G18350.1 Arabidopsis thaliana 0.41 MAP kinase kinase 7 SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT1G18420.1 Arabidopsis thaliana 0.42 Aluminium activated malate transporter family protein SRR364677:GFP sample AT1G18440.1 Arabidopsis thaliana 0.38 Peptidyl-tRNA hydrolase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G18490.1 Arabidopsis thaliana 0.48 Protein of unknown function (DUF1637) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G18510.1 Arabidopsis thaliana 0.30 tetraspanin 16 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G18670.1 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR1144845:be1-3 2 days on SIM AT1G18700.1 Arabidopsis thaliana 0.36 DNAJ heat shock N-terminal domain-containing protein SRR1652314:atrtf2-1 AT1G18700.2 Arabidopsis thaliana 0.33 DNAJ heat shock N-terminal domain-containing protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G18710.1 Arabidopsis thaliana 0.31 myb domain protein 47 SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G18720.1 Arabidopsis thaliana 0.80 Protein of unknown function (DUF962) SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G18730.2 Arabidopsis thaliana 0.59 NDH dependent flow 6 SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT1G18740.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF793) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G18745.1 Arabidopsis thaliana 0.62 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G18750.2 Arabidopsis thaliana 0.40 AGAMOUS-like 65 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G18860.1 Arabidopsis thaliana 0.37 WRKY DNA-binding protein 61 SRR364677:GFP sample AT1G18879.1 Arabidopsis thaliana 0.67 MIR837a; miRNA SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G18910.1 Arabidopsis thaliana 0.40 zinc ion binding;zinc ion binding SRR331224:arabidopsis root in control condition SRR1524941:iron-deficiency sample #1 SRR1524945:iron-deficiency sample #2 SRR1524946:iron-deficiency sample #3 SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G18960.1 Arabidopsis thaliana 0.40 myb-like HTH transcriptional regulator family protein SRR1061358:GSM1298726: FB1_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT1G18990.1 Arabidopsis thaliana 0.88 Protein of unknown function, DUF593 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G19020.1 Arabidopsis thaliana 0.38 Unknown SRR627677:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627678:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq AT1G19040.1 Arabidopsis thaliana 0.55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G19050.1 Arabidopsis thaliana 0.36 response regulator 7 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G19070.1 Arabidopsis thaliana 0.32 F-box family protein SRR1652314:atrtf2-1 SRR1257392:GSM1371354: infected Col0 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT1G19080.1 Arabidopsis thaliana 0.34 GINS complex protein SRR1652314:atrtf2-1 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G19090.1 Arabidopsis thaliana 0.86 receptor-like serine/threonine kinase 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G19110.1 Arabidopsis thaliana 0.45 inter-alpha-trypsin inhibitor heavy chain-related SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G19115.2 Arabidopsis thaliana 0.68 Unknown SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G19115.3 Arabidopsis thaliana 0.48 Unknown SRR1144843:WS 7 days on CIM AT1G19180.2 Arabidopsis thaliana 0.32 jasmonate-zim-domain protein 1 SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G19200.1 Arabidopsis thaliana 0.41 Protein of unknown function (DUF581) SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G19210.1 Arabidopsis thaliana 0.40 Integrase-type DNA-binding superfamily protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G19320.1 Arabidopsis thaliana 0.46 Pathogenesis-related thaumatin superfamily protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G19350.5 Arabidopsis thaliana 0.36 Brassinosteroid signalling positive regulator (BZR1) family protein SRR1652314:atrtf2-1 AT1G19371.1 Arabidopsis thaliana 0.68 MIR169H; miRNA SRR1652315:prp8-7 AT1G19373.1 Arabidopsis thaliana 0.42 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G19376.1 Arabidopsis thaliana 0.47 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G19380.1 Arabidopsis thaliana 0.47 Protein of unknown function (DUF1195) SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G19396.2 Arabidopsis thaliana 0.44 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G19396.3 Arabidopsis thaliana 0.36 Unknown SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G19430.1 Arabidopsis thaliana 0.31 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G19460.1 Arabidopsis thaliana 0.40 Galactose oxidase/kelch repeat superfamily protein SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G19464.1 Arabidopsis thaliana 0.63 MIR864a; miRNA SRR1001907:GSM1239085: ibl1 mutant #1; Arabidopsis thaliana; RNA-Seq AT1G19480.1 Arabidopsis thaliana 0.55 DNA glycosylase superfamily protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT1G19500.1 Arabidopsis thaliana 0.93 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G19540.1 Arabidopsis thaliana 0.31 NmrA-like negative transcriptional regulator family protein SRR1019438:GSM1252264: Col-0 + BR RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019439:GSM1252265: Col-0 + BR RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR1019442:GSM1252268: iaa3 + BR RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019443:GSM1252269: iaa3 + BR RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT1G19570.1 Arabidopsis thaliana 0.30 dehydroascorbate reductase SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT1G19580.1 Arabidopsis thaliana 0.34 gamma carbonic anhydrase 1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G19620.1 Arabidopsis thaliana 0.66 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G19630.1 Arabidopsis thaliana 0.32 cytochrome P450, family 722, subfamily A, polypeptide 1 ERR377679:Illumina HiSeq 2500 sequencin SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT1G19640.1 Arabidopsis thaliana 0.42 jasmonic acid carboxyl methyltransferase SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G19680.1 Arabidopsis thaliana 0.41 RING/U-box superfamily protein SRR446044:Vir.12h.B AT1G19770.1 Arabidopsis thaliana 0.34 purine permease 14 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1005389:GSM1242378: cmt2_mRNA_rep1; Arabidopsis thaliana; RNA-Seq AT1G19780.1 Arabidopsis thaliana 0.52 cyclic nucleotide gated channel 8 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G19800.2 Arabidopsis thaliana 0.45 trigalactosyldiacylglycerol 1 SRR1159839:GSM1321712: Set_2_bio_replicate_2-mom1; Arabidopsis thaliana; RNA-Seq AT1G19840.1 Arabidopsis thaliana 0.46 SAUR-like auxin-responsive protein family SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G19860.1 Arabidopsis thaliana 0.30 Zinc finger C-x8-C-x5-C-x3-H type family protein SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G19890.1 Arabidopsis thaliana 0.68 male-gamete-specific histone H3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G19950.1 Arabidopsis thaliana 0.67 HVA22-like protein H (ATHVA22H) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G19960.1 Arabidopsis thaliana 0.39 Unknown SRR1257401:GSM1371363: mock Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq SRR1257402:GSM1371364: mock Col0 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT1G20030.2 Arabidopsis thaliana 0.55 Pathogenesis-related thaumatin superfamily protein SRR1583556:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT1G20065.1 Arabidopsis thaliana 0.32 Unknown SRR1144843:WS 7 days on CIM AT1G20130.2 Arabidopsis thaliana 0.64 GDSL-like Lipase/Acylhydrolase superfamily protein DRR008476: DRR008478:Arabidopsis ibm2-2 mRNA_seq AT1G20180.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF677) SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT1G20180.2 Arabidopsis thaliana 0.31 Protein of unknown function (DUF677) SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G20200.1 Arabidopsis thaliana 0.39 PAM domain (PCI/PINT associated module) protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G20240.1 Arabidopsis thaliana 0.60 SWI-SNF-related chromatin binding protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G20260.1 Arabidopsis thaliana 0.30 ATPase, V1 complex, subunit B protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G20290.1 Arabidopsis thaliana 0.33 SWI-SNF-related chromatin binding protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G20310.1 Arabidopsis thaliana 0.44 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G20320.1 Arabidopsis thaliana 0.48 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G20360.1 Arabidopsis thaliana 0.74 F-box family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G20375.1 Arabidopsis thaliana 0.66 MIR394A; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G20400.1 Arabidopsis thaliana 0.45 Protein of unknown function (DUF1204) SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT1G20420.1 Arabidopsis thaliana 1.00 pre-tRNA SRR1576069:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT1G20470.1 Arabidopsis thaliana 0.64 SAUR-like auxin-responsive protein family SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G20510.1 Arabidopsis thaliana 0.62 OPC-8:0 CoA ligase1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G20515.1 Arabidopsis thaliana 0.78 other RNA SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G20520.1 Arabidopsis thaliana 0.79 Arabidopsis protein of unknown function (DUF241) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G20575.1 Arabidopsis thaliana 0.39 Nucleotide-diphospho-sugar transferases superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G20640.1 Arabidopsis thaliana 0.61 Plant regulator RWP-RK family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G20691.1 Arabidopsis thaliana 0.31 Unknown SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G20696.3 Arabidopsis thaliana 0.42 high mobility group B3 SRR627659:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq SRR627668:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq AT1G20740.1 Arabidopsis thaliana 0.30 Protein of unknown function (DUF833) SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT1G20760.1 Arabidopsis thaliana 0.42 Calcium-binding EF hand family protein SRR1652314:atrtf2-1 AT1G20820.1 Arabidopsis thaliana 0.33 pre-tRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT1G20830.1 Arabidopsis thaliana 0.31 multiple chloroplast division site 1 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G20875.1 Arabidopsis thaliana 0.48 Unknown SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G20900.1 Arabidopsis thaliana 0.41 Predicted AT-hook DNA-binding family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G20967.1 Arabidopsis thaliana 0.34 Unknown SRR1508377:GSM1429458: Hen-16-Input1; Arabidopsis thaliana; RNA-Seq SRR1508382:GSM1429460: Hen-16-Input2; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G21060.1 Arabidopsis thaliana 0.36 Protein of unknown function, DUF547 SRR477075:GSM912634: Col-0 RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477076:GSM912635: Col-0 RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT1G21065.1 Arabidopsis thaliana 0.37 Unknown ERR229858:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G21210.1 Arabidopsis thaliana 0.35 wall associated kinase 4 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G21230.1 Arabidopsis thaliana 0.63 wall associated kinase 5 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G21280.1 Arabidopsis thaliana 0.34 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G21281.1 Arabidopsis thaliana 0.59 Unknown SRR953376:RLK in plant defense-wildtype LPS - biological replicate 2 SRR515325:GSM951353: RVE8:GR_mock_2; Arabidopsis thaliana; RNA-Seq SRR515326:GSM951353: RVE8:GR_mock_2; Arabidopsis thaliana; RNA-Seq SRR1654360:GSM1546545: atr_mock_R2; Arabidopsis thaliana; RNA-Seq AT1G21320.2 Arabidopsis thaliana 0.41 nucleotide binding;nucleic acid binding SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G21340.1 Arabidopsis thaliana 0.81 Dof-type zinc finger DNA-binding family protein SRR364678:nonGFP sample AT1G21350.2 Arabidopsis thaliana 0.40 Thioredoxin superfamily protein SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq AT1G21380.1 Arabidopsis thaliana 0.36 Target of Myb protein 1 SRR364677:GFP sample AT1G21395.1 Arabidopsis thaliana 0.69 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G21500.1 Arabidopsis thaliana 0.34 Unknown SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq AT1G21525.1 Arabidopsis thaliana 0.38 Unknown SRR446041:Avr.12h.A AT1G21540.1 Arabidopsis thaliana 0.33 AMP-dependent synthetase and ligase family protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G21550.1 Arabidopsis thaliana 0.36 Calcium-binding EF-hand family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G21610.1 Arabidopsis thaliana 0.33 wound-responsive family protein SRR1652314:atrtf2-1 AT1G21610.2 Arabidopsis thaliana 0.40 wound-responsive family protein SRR1652314:atrtf2-1 AT1G21700.1 Arabidopsis thaliana 0.35 SWITCH/sucrose nonfermenting 3C SRR944368:GSM1197430: Salt-3h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT1G21720.1 Arabidopsis thaliana 0.47 proteasome beta subunit C1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G21722.1 Arabidopsis thaliana 0.33 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT1G21738.1 Arabidopsis thaliana 0.70 Unknown SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G21835.1 Arabidopsis thaliana 0.44 Plant thionin family protein SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G21880.1 Arabidopsis thaliana 0.54 lysm domain GPI-anchored protein 1 precursor SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G21910.1 Arabidopsis thaliana 0.44 Integrase-type DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G21940.1 Arabidopsis thaliana 0.37 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A SRR479034:GSM913712: drm2_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT1G21980.1 Arabidopsis thaliana 0.40 phosphatidylinositol-4-phosphate 5-kinase 1 SRR364677:GFP sample SRR364678:nonGFP sample AT1G22050.1 Arabidopsis thaliana 0.35 membrane-anchored ubiquitin-fold protein 6 precursor SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G22090.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF626) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G22130.1 Arabidopsis thaliana 0.41 AGAMOUS-like 104 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G22190.1 Arabidopsis thaliana 0.49 Integrase-type DNA-binding superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G22200.1 Arabidopsis thaliana 0.59 Endoplasmic reticulum vesicle transporter protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G22220.1 Arabidopsis thaliana 0.40 F-box family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G22260.1 Arabidopsis thaliana 0.53 Myosin heavy chain-related protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G22275.1 Arabidopsis thaliana 0.62 Myosin heavy chain-related protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G22310.2 Arabidopsis thaliana 0.31 methyl-CPG-binding domain 8 SRR1652314:atrtf2-1 AT1G22370.2 Arabidopsis thaliana 0.48 UDP-glucosyl transferase 85A5 SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G22403.1 Arabidopsis thaliana 0.61 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G22403.2 Arabidopsis thaliana 0.41 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G22430.1 Arabidopsis thaliana 0.44 GroES-like zinc-binding dehydrogenase family protein SRR1652314:atrtf2-1 AT1G22470.1 Arabidopsis thaliana 0.86 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G22480.1 Arabidopsis thaliana 0.54 Cupredoxin superfamily protein SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G22510.2 Arabidopsis thaliana 0.36 RING/U-box protein with domain of unknown function (DUF 1232) SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G22620.1 Arabidopsis thaliana 0.32 Phosphoinositide phosphatase family protein SRR1652314:atrtf2-1 AT1G22651.1 Arabidopsis thaliana 0.80 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT1G22670.1 Arabidopsis thaliana 0.40 Protease-associated (PA) RING/U-box zinc finger family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G22690.1 Arabidopsis thaliana 0.42 Gibberellin-regulated family protein SRR826412:Sample Control BR5 AT1G22690.3 Arabidopsis thaliana 0.48 Gibberellin-regulated family protein SRR826412:Sample Control BR5 AT1G22700.3 Arabidopsis thaliana 0.37 Tetratricopeptide repeat (TPR)-like superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G22790.2 Arabidopsis thaliana 0.31 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G22810.1 Arabidopsis thaliana 0.40 Integrase-type DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G22830.1 Arabidopsis thaliana 0.33 Tetratricopeptide repeat (TPR)-like superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G22830.2 Arabidopsis thaliana 0.45 Tetratricopeptide repeat (TPR)-like superfamily protein ERR588045:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G22840.2 Arabidopsis thaliana 0.30 CYTOCHROME C-1 SRR609267:GSM1025547: Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR609269:GSM1025549: mos2-2 rep1; Arabidopsis thaliana; RNA-Seq AT1G22880.1 Arabidopsis thaliana 0.43 cellulase 5 SRR1260036:P+_hps7_R1 AT1G22910.2 Arabidopsis thaliana 0.40 RNA-binding (RRM/RBD/RNP motifs) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G22985.1 Arabidopsis thaliana 0.35 Integrase-type DNA-binding superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT1G23010.1 Arabidopsis thaliana 0.77 Cupredoxin superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G23020.1 Arabidopsis thaliana 0.33 ferric reduction oxidase 3 SRR1652314:atrtf2-1 SRR1652315:prp8-7 AT1G23060.1 Arabidopsis thaliana 0.41 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G23070.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF300) SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G23074.1 Arabidopsis thaliana 0.51 Unknown SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT1G23120.1 Arabidopsis thaliana 0.53 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G23147.1 Arabidopsis thaliana 0.55 RALF-like 3 SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT1G23149.1 Arabidopsis thaliana 0.61 conserved peptide upstream open reading frame 29 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G23170.2 Arabidopsis thaliana 0.36 Protein of unknown function DUF2359, transmembrane SRR364677:GFP sample AT1G23210.1 Arabidopsis thaliana 0.31 glycosyl hydrolase 9B6 SRR1260036:P+_hps7_R1 AT1G23220.1 Arabidopsis thaliana 0.51 Dynein light chain type 1 family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G23240.3 Arabidopsis thaliana 0.39 Caleosin-related family protein DRR008476: DRR008478:Arabidopsis ibm2-2 mRNA_seq SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G23300.1 Arabidopsis thaliana 0.96 MATE efflux family protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G23320.1 Arabidopsis thaliana 0.42 tryptophan aminotransferase related 1 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G23340.1 Arabidopsis thaliana 0.32 Protein of Unknown Function (DUF239) SRR1144843:WS 7 days on CIM AT1G23350.1 Arabidopsis thaliana 0.95 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G23400.1 Arabidopsis thaliana 0.43 RNA-binding CRS1 / YhbY (CRM) domain-containing protein SRR1652314:atrtf2-1 AT1G23450.1 Arabidopsis thaliana 0.35 Tetratricopeptide repeat (TPR)-like superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance SRR364677:GFP sample SRR364678:nonGFP sample AT1G23460.1 Arabidopsis thaliana 0.35 Pectin lyase-like superfamily protein SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq AT1G23465.1 Arabidopsis thaliana 0.48 Peptidase S24/S26A/S26B/S26C family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G23470.1 Arabidopsis thaliana 0.45 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G23480.1 Arabidopsis thaliana 0.42 cellulose synthase-like A3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G23520.2 Arabidopsis thaliana 0.37 Domain of unknown function (DUF220) SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT1G23540.1 Arabidopsis thaliana 0.83 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G23620.1 Arabidopsis thaliana 0.47 Unknown SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G23640.1 Arabidopsis thaliana 0.48 Unknown SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G23720.1 Arabidopsis thaliana 0.58 Proline-rich extensin-like family protein SRR364677:GFP sample AT1G23724.1 Arabidopsis thaliana 0.52 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G23730.1 Arabidopsis thaliana 0.33 beta carbonic anhydrase 3 SRR776586:GSM1099201: spl7_cu+; Arabidopsis thaliana; RNA-Seq AT1G23760.1 Arabidopsis thaliana 0.43 BURP domain-containing protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G23860.2 Arabidopsis thaliana 0.31 RS-containing zinc finger protein 21 SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT1G23910.1 Arabidopsis thaliana 0.44 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G23930.1 Arabidopsis thaliana 0.31 transposable element gene SRR1058116:GSM1297918: at-seed-ler_wt_x_col_met 1; Arabidopsis thaliana; RNA-Seq SRR1058117:GSM1297919: at-seed-ler_wt_x_col_met 2; Arabidopsis thaliana; RNA-Seq SRR1058119:GSM1297921: at-seed-ler_wt_x_col_osd_met 1; Arabidopsis thaliana; RNA-Seq SRR1058120:GSM1297922: at-seed-ler_wt_x_col_osd_met 2; Arabidopsis thaliana; RNA-Seq SRR1058121:GSM1297923: at-seed-ler_wt_x_col_osd_met 3; Arabidopsis thaliana; RNA-Seq AT1G23950.2 Arabidopsis thaliana 0.31 Protein of unknown function (DUF626) SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G23950.5 Arabidopsis thaliana 0.73 Protein of unknown function (DUF626) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G23960.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF626) SRR1652314:atrtf2-1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G24000.1 Arabidopsis thaliana 0.45 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT1G24030.1 Arabidopsis thaliana 0.35 Protein kinase superfamily protein SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G24040.2 Arabidopsis thaliana 0.42 Acyl-CoA N-acyltransferases (NAT) superfamily protein SRR1652315:prp8-7 AT1G24060.1 Arabidopsis thaliana 0.38 Unknown SRR1105600:GSM1303973: PDAT_7-8_C; Arabidopsis thaliana; RNA-Seq AT1G24095.1 Arabidopsis thaliana 0.40 Putative thiol-disulphide oxidoreductase DCC SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G24110.1 Arabidopsis thaliana 0.90 Peroxidase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G24147.1 Arabidopsis thaliana 0.41 Unknown SRR514998:GSM736442: At_mRNASeq AT1G24190.1 Arabidopsis thaliana 0.36 SIN3-like 3 SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT1G24212.1 Arabidopsis thaliana 0.33 Unknown SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G24240.1 Arabidopsis thaliana 0.36 Ribosomal protein L19 family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G24270.1 Arabidopsis thaliana 0.42 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G24320.1 Arabidopsis thaliana 0.48 Six-hairpin glycosidases superfamily protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G24390.1 Arabidopsis thaliana 0.36 Unknown SRR1039912:GSM1276499: LerxLer_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G24405.1 Arabidopsis thaliana 0.70 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G24520.1 Arabidopsis thaliana 0.95 homolog of Brassica campestris pollen protein 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G24530.1 Arabidopsis thaliana 0.51 Transducin/WD40 repeat-like superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G24570.1 Arabidopsis thaliana 0.30 Protein of unknown function (DUF707) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G24580.1 Arabidopsis thaliana 0.31 RING/U-box superfamily protein SRR907283:SAD1 dynamically regulates alternative splicing and stress tolerance SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G24590.1 Arabidopsis thaliana 0.58 DORNROSCHEN-like ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G24880.2 Arabidopsis thaliana 0.68 UDP-3-O-acyl N-acetylglycosamine deacetylase family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G25098.1 Arabidopsis thaliana 0.55 other RNA SRR1652314:atrtf2-1 AT1G25220.2 Arabidopsis thaliana 0.32 anthranilate synthase beta subunit 1 SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G25240.1 Arabidopsis thaliana 0.88 ENTH/VHS/GAT family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G25275.2 Arabidopsis thaliana 0.43 Unknown SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other SRR609267:GSM1025547: Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G25275.3 Arabidopsis thaliana 0.34 Unknown SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other SRR609269:GSM1025549: mos2-2 rep1; Arabidopsis thaliana; RNA-Seq SRR609270:GSM1025550: mos2-2 rep2; Arabidopsis thaliana; RNA-Seq AT1G25340.1 Arabidopsis thaliana 0.86 myb domain protein 116 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G25400.2 Arabidopsis thaliana 0.39 Unknown SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G25420.2 Arabidopsis thaliana 0.51 Regulator of Vps4 activity in the MVB pathway protein SRR1652314:atrtf2-1 AT1G25420.3 Arabidopsis thaliana 0.48 Regulator of Vps4 activity in the MVB pathway protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G25450.1 Arabidopsis thaliana 0.51 3-ketoacyl-CoA synthase 5 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G25550.1 Arabidopsis thaliana 0.43 myb-like transcription factor family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G26090.1 Arabidopsis thaliana 0.31 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1652314:atrtf2-1 AT1G26130.2 Arabidopsis thaliana 0.46 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G26208.2 Arabidopsis thaliana 0.36 other RNA SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq AT1G26230.2 Arabidopsis thaliana 0.31 TCP-1/cpn60 chaperonin family protein SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G26233.1 Arabidopsis thaliana 0.55 SNOR95; snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G26235.1 Arabidopsis thaliana 0.39 other RNA SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT1G26240.1 Arabidopsis thaliana 0.35 Proline-rich extensin-like family protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G26290.1 Arabidopsis thaliana 0.41 Unknown SRR520239:GSM958259: WT-RNA-3; Arabidopsis thaliana; RNA-Seq AT1G26320.2 Arabidopsis thaliana 0.33 Zinc-binding dehydrogenase family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G26430.1 Arabidopsis thaliana 0.31 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT1G26515.1 Arabidopsis thaliana 0.73 F-box and associated interaction domains-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G26530.1 Arabidopsis thaliana 0.33 PIN domain-like family protein SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G26630.2 Arabidopsis thaliana 0.37 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G26650.1 Arabidopsis thaliana 0.54 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G26665.2 Arabidopsis thaliana 0.71 Mediator complex, subunit Med10 SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT1G26700.1 Arabidopsis thaliana 0.71 Seven transmembrane MLO family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G26720.1 Arabidopsis thaliana 0.35 Unknown SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G26730.1 Arabidopsis thaliana 0.43 EXS (ERD1/XPR1/SYG1) family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G26770.1 Arabidopsis thaliana 0.58 expansin A10 SRR446044:Vir.12h.B AT1G26771.1 Arabidopsis thaliana 0.83 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G26773.1 Arabidopsis thaliana 0.70 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G26780.1 Arabidopsis thaliana 0.77 myb domain protein 117 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G26800.1 Arabidopsis thaliana 0.31 RING/U-box superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G26850.1 Arabidopsis thaliana 0.33 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G26850.2 Arabidopsis thaliana 0.40 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR1652314:atrtf2-1 AT1G26870.1 Arabidopsis thaliana 0.72 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein SRR1144843:WS 7 days on CIM AT1G26910.1 Arabidopsis thaliana 0.54 Ribosomal protein L16p/L10e family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G26921.1 Arabidopsis thaliana 0.56 Unknown SRR1046871:GSM1287136: Arabidopsis thaliana Oy-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G26945.1 Arabidopsis thaliana 0.39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR949990:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) SRR949991:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) AT1G26960.1 Arabidopsis thaliana 0.37 homeobox protein 23 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G26973.1 Arabidopsis thaliana 0.47 MIR395A; miRNA SRR1013899:responses to BL SRR1005387:GSM1242376: drm12_mRNA_rep1; Arabidopsis thaliana; RNA-Seq SRR513741:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 1 AT1G26975.1 Arabidopsis thaliana 0.79 MIR395B; miRNA SRR392127:GSM852817: mRNA-seq in flc, technical replicate 2; Arabidopsis thaliana; RNA-Seq AT1G26985.1 Arabidopsis thaliana 0.41 MIR395C; miRNA ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G27008.1 Arabidopsis thaliana 0.48 Unknown ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G27135.1 Arabidopsis thaliana 0.37 Maternally expressed gene (MEG) family protein ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G27140.1 Arabidopsis thaliana 0.40 glutathione S-transferase tau 14 SRR1260038:P-_WT_R1 AT1G27213.1 Arabidopsis thaliana 0.59 Unknown SRR1106559:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 AT1G27370.1 Arabidopsis thaliana 0.56 squamosa promoter binding protein-like 10 SRR1652314:atrtf2-1 AT1G27380.2 Arabidopsis thaliana 0.39 ROP-interactive CRIB motif-containing protein 2 SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq SRR953401:GSM1210578: silique; Arabidopsis thaliana; RNA-Seq SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G27410.1 Arabidopsis thaliana 0.32 DNA repair metallo-beta-lactamase family protein SRR1652314:atrtf2-1 AT1G27440.1 Arabidopsis thaliana 0.37 Exostosin family protein SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq SRR953401:GSM1210578: silique; Arabidopsis thaliana; RNA-Seq SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G27450.3 Arabidopsis thaliana 0.41 adenine phosphoribosyl transferase 1 SRR1260035:P-_hps7_R2 AT1G27500.1 Arabidopsis thaliana 0.69 Tetratricopeptide repeat (TPR)-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G27510.1 Arabidopsis thaliana 0.53 Protein of unknown function (DUF3506) SRR1652314:atrtf2-1 AT1G27540.2 Arabidopsis thaliana 0.33 Protein of unknown function (DUF295) ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G27610.1 Arabidopsis thaliana 0.81 Unknown SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G27695.1 Arabidopsis thaliana 0.39 glycine-rich protein SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT1G27710.1 Arabidopsis thaliana 0.32 Glycine-rich protein family DRR008476: DRR008478:Arabidopsis ibm2-2 mRNA_seq AT1G27740.1 Arabidopsis thaliana 0.75 root hair defective 6-like 4 SRR364677:GFP sample AT1G27760.2 Arabidopsis thaliana 0.46 interferon-related developmental regulator family protein / IFRD protein family SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G27770.1 Arabidopsis thaliana 0.64 autoinhibited Ca2+-ATPase 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G27820.1 Arabidopsis thaliana 0.79 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G27960.1 Arabidopsis thaliana 0.49 evolutionarily conserved C-terminal region 9 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G27980.1 Arabidopsis thaliana 0.32 dihydrosphingosine phosphate lyase SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G28000.1 Arabidopsis thaliana 0.51 Pentatricopeptide repeat (PPR) superfamily protein SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT1G28007.1 Arabidopsis thaliana 0.73 Unknown SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A AT1G28040.1 Arabidopsis thaliana 0.45 RING/U-box superfamily protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G28090.1 Arabidopsis thaliana 0.32 Polynucleotide adenylyltransferase family protein SRR1652314:atrtf2-1 AT1G28100.2 Arabidopsis thaliana 0.39 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G28100.3 Arabidopsis thaliana 0.38 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G28110.2 Arabidopsis thaliana 0.39 serine carboxypeptidase-like 45 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G28135.1 Arabidopsis thaliana 0.88 Unknown SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT1G28160.1 Arabidopsis thaliana 0.82 Integrase-type DNA-binding superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G28180.1 Arabidopsis thaliana 0.56 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G28210.1 Arabidopsis thaliana 0.53 DNAJ heat shock family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G28250.1 Arabidopsis thaliana 0.51 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G28260.1 Arabidopsis thaliana 0.52 Telomerase activating protein Est1 SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G28270.1 Arabidopsis thaliana 0.89 ralf-like 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G28280.2 Arabidopsis thaliana 0.32 VQ motif-containing protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G28281.1 Arabidopsis thaliana 0.66 Unknown SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G28290.2 Arabidopsis thaliana 0.71 arabinogalactan protein 31 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G28307.1 Arabidopsis thaliana 0.66 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G28330.4 Arabidopsis thaliana 0.42 dormancy-associated protein-like 1 SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G28330.5 Arabidopsis thaliana 0.63 dormancy-associated protein-like 1 SRR609269:GSM1025549: mos2-2 rep1; Arabidopsis thaliana; RNA-Seq AT1G28370.1 Arabidopsis thaliana 0.37 ERF domain protein 11 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G28380.1 Arabidopsis thaliana 0.62 MAC/Perforin domain-containing protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G28390.1 Arabidopsis thaliana 0.31 Protein kinase superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G28395.5 Arabidopsis thaliana 0.34 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G28400.1 Arabidopsis thaliana 0.31 Unknown SRR1144842:be1-3 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT1G28510.1 Arabidopsis thaliana 0.31 Optic atrophy 3 protein (OPA3) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G28530.1 Arabidopsis thaliana 0.42 Unknown SRR949956:early shade responses in Arabidopsis adult plants (Col, 1 hr sun) AT1G28550.1 Arabidopsis thaliana 0.74 RAB GTPase homolog A1I SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G28591.1 Arabidopsis thaliana 0.67 Unknown SRR1257389:GSM1371351: mock Col0 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G28620.1 Arabidopsis thaliana 0.34 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G28680.1 Arabidopsis thaliana 0.39 HXXXD-type acyl-transferase family protein SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G28720.1 Arabidopsis thaliana 0.89 pre-tRNA SRR1179961:GSM1337727: Arabidopsis thaliana Bur-0 X Col-0 seedling, biological replicate 3; Arabidopsis thaliana; RNA-Seq AT1G28730.1 Arabidopsis thaliana 0.31 pre-tRNA SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G28760.1 Arabidopsis thaliana 0.30 Uncharacterized conserved protein (DUF2215) SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G28815.1 Arabidopsis thaliana 0.62 Unknown SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G28820.1 Arabidopsis thaliana 0.55 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT1G29000.1 Arabidopsis thaliana 0.36 Heavy metal transport/detoxification superfamily protein ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588044:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G29025.1 Arabidopsis thaliana 0.32 Calcium-binding EF-hand family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G29080.1 Arabidopsis thaliana 0.47 Papain family cysteine protease SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G29100.1 Arabidopsis thaliana 0.79 Heavy metal transport/detoxification superfamily protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G29140.1 Arabidopsis thaliana 0.87 Pollen Ole e 1 allergen and extensin family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G29150.1 Arabidopsis thaliana 0.61 non-ATPase subunit 9 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G29170.1 Arabidopsis thaliana 0.34 SCAR family protein SRR1144843:WS 7 days on CIM AT1G29240.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF688) ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G29265.1 Arabidopsis thaliana 0.89 MIR399A; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G29280.1 Arabidopsis thaliana 0.31 WRKY DNA-binding protein 65 SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT1G29340.1 Arabidopsis thaliana 0.38 plant U-box 17 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G29400.2 Arabidopsis thaliana 0.51 MEI2-like protein 5 SRR1652314:atrtf2-1 AT1G29418.1 Arabidopsis thaliana 0.40 Unknown SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G29465.1 Arabidopsis thaliana 0.40 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G29470.2 Arabidopsis thaliana 0.31 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G29500.1 Arabidopsis thaliana 0.53 SAUR-like auxin-responsive protein family SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G29590.1 Arabidopsis thaliana 0.40 Eukaryotic initiation factor 4E protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G29630.1 Arabidopsis thaliana 0.37 5'-3' exonuclease family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G29640.1 Arabidopsis thaliana 0.40 Protein of unknown function, DUF584 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G29690.1 Arabidopsis thaliana 0.36 MAC/Perforin domain-containing protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G29740.1 Arabidopsis thaliana 0.43 Leucine-rich repeat transmembrane protein kinase SRR364678:nonGFP sample AT1G29770.1 Arabidopsis thaliana 0.43 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR1598767:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT1G29800.1 Arabidopsis thaliana 0.47 RING/FYVE/PHD-type zinc finger family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G29850.2 Arabidopsis thaliana 0.54 double-stranded DNA-binding family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G29850.3 Arabidopsis thaliana 0.34 double-stranded DNA-binding family protein SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G29980.2 Arabidopsis thaliana 0.55 Protein of unknown function, DUF642 SRR520240:GSM958260: pif3-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520243:GSM958263: pif145-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520246:GSM958266: pifq-RNA-1; Arabidopsis thaliana; RNA-Seq AT1G30016.1 Arabidopsis thaliana 0.61 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G30020.1 Arabidopsis thaliana 0.32 Protein of unknown function, DUF538 SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT1G30050.1 Arabidopsis thaliana 0.53 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G30060.1 Arabidopsis thaliana 0.76 COP1-interacting protein-related SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G30070.1 Arabidopsis thaliana 0.45 SGS domain-containing protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G30070.2 Arabidopsis thaliana 0.82 SGS domain-containing protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G30135.1 Arabidopsis thaliana 0.53 jasmonate-zim-domain protein 8 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G30140.1 Arabidopsis thaliana 0.79 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G30190.1 Arabidopsis thaliana 0.73 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G30210.1 Arabidopsis thaliana 0.39 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 SRR1652314:atrtf2-1 AT1G30220.1 Arabidopsis thaliana 0.30 inositol transporter 2 SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G30230.2 Arabidopsis thaliana 0.50 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G30250.1 Arabidopsis thaliana 0.42 Unknown SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT1G30282.1 Arabidopsis thaliana 0.31 other RNA SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G30320.1 Arabidopsis thaliana 0.33 Remorin family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G30370.1 Arabidopsis thaliana 0.68 alpha/beta-Hydrolases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G30475.2 Arabidopsis thaliana 0.32 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G30475.3 Arabidopsis thaliana 0.50 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G30510.2 Arabidopsis thaliana 0.36 root FNR 2 SRR1046893:GSM1287158: Arabidopsis thaliana Wu-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G30540.1 Arabidopsis thaliana 0.43 Actin-like ATPase superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G30630.1 Arabidopsis thaliana 0.39 Coatomer epsilon subunit ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G30690.2 Arabidopsis thaliana 0.56 Sec14p-like phosphatidylinositol transfer family protein SRR1046912:GSM1287170: Ct-1 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT1G30710.1 Arabidopsis thaliana 0.82 FAD-binding Berberine family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G30720.1 Arabidopsis thaliana 0.63 FAD-binding Berberine family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G30814.3 Arabidopsis thaliana 0.41 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G30820.1 Arabidopsis thaliana 0.36 CTP synthase family protein SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT1G30825.1 Arabidopsis thaliana 0.43 Arp2/3 complex, 34 kD subunit p34-Arc SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G30850.1 Arabidopsis thaliana 0.30 root hair specific 4 SRR364677:GFP sample AT1G30860.1 Arabidopsis thaliana 0.44 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G30910.1 Arabidopsis thaliana 0.33 Molybdenum cofactor sulfurase family protein SRR1508371:GSM1429455: Can-0-IP1; Arabidopsis thaliana; RNA-Seq SRR1508372:GSM1429455: Can-0-IP1; Arabidopsis thaliana; RNA-Seq SRR1508375:GSM1429457: Can-0-IP2; Arabidopsis thaliana; RNA-Seq SRR1508376:GSM1429457: Can-0-IP2; Arabidopsis thaliana; RNA-Seq SRR1508379:GSM1429459: Hen-16-IP1; Arabidopsis thaliana; RNA-Seq SRR1508380:GSM1429459: Hen-16-IP1; Arabidopsis thaliana; RNA-Seq SRR1508383:GSM1429461: Hen-16-IP2; Arabidopsis thaliana; RNA-Seq SRR1508384:GSM1429461: Hen-16-IP2; Arabidopsis thaliana; RNA-Seq AT1G30975.1 Arabidopsis thaliana 0.81 transposable element gene SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G30990.1 Arabidopsis thaliana 0.64 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR364677:GFP sample AT1G31070.2 Arabidopsis thaliana 0.38 N-acetylglucosamine-1-phosphate uridylyltransferase 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G31160.1 Arabidopsis thaliana 0.37 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 SRR1652314:atrtf2-1 AT1G31245.1 Arabidopsis thaliana 0.62 Unknown SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G31258.1 Arabidopsis thaliana 0.46 other RNA SRR1257399:GSM1371361: infected T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G31270.1 Arabidopsis thaliana 0.58 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G31280.1 Arabidopsis thaliana 0.34 Argonaute family protein SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT1G31300.1 Arabidopsis thaliana 0.34 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G31319.1 Arabidopsis thaliana 0.50 Unknown SRR1144844:WS 2 days on SIM AT1G31360.2 Arabidopsis thaliana 0.53 RECQ helicase L2 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G31500.3 Arabidopsis thaliana 0.40 DNAse I-like superfamily protein SRR1652314:atrtf2-1 AT1G31530.1 Arabidopsis thaliana 0.32 DNAse I-like superfamily protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G31540.1 Arabidopsis thaliana 0.51 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G31630.1 Arabidopsis thaliana 0.78 AGAMOUS-like 86 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G31740.1 Arabidopsis thaliana 0.53 beta-galactosidase 15 SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT1G31750.1 Arabidopsis thaliana 0.44 proline-rich family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G31835.1 Arabidopsis thaliana 0.45 Unknown SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G31860.1 Arabidopsis thaliana 0.57 histidine biosynthesis bifunctional protein (HISIE) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G31900.1 Arabidopsis thaliana 0.37 Unknown SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq SRR1257396:GSM1371358: infected NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT1G31990.1 Arabidopsis thaliana 0.32 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G32000.1 Arabidopsis thaliana 0.42 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT1G32010.1 Arabidopsis thaliana 0.53 myosin heavy chain-related SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT1G32020.1 Arabidopsis thaliana 0.51 F-box family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G32120.1 Arabidopsis thaliana 0.92 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G32230.3 Arabidopsis thaliana 0.33 WWE protein-protein interaction domain protein family SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G32290.1 Arabidopsis thaliana 0.39 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G32337.1 Arabidopsis thaliana 0.42 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G32361.1 Arabidopsis thaliana 0.42 RING/U-box superfamily protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G32420.1 Arabidopsis thaliana 0.41 F-box and associated interaction domains-containing protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G32540.1 Arabidopsis thaliana 0.31 lsd one like 1 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G32540.3 Arabidopsis thaliana 0.66 lsd one like 1 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G32570.1 Arabidopsis thaliana 0.58 Unknown SRR1046871:GSM1287136: Arabidopsis thaliana Oy-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046872:GSM1287137: Arabidopsis thaliana Oy-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G32582.1 Arabidopsis thaliana 0.94 MIR400; miRNA SRR1105829:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 AT1G32650.1 Arabidopsis thaliana 0.39 Unknown SRR1159837:GSM1321710: Set_2_bio_replicate_2-WT_Col; Arabidopsis thaliana; RNA-Seq AT1G32670.1 Arabidopsis thaliana 0.88 Unknown SRR1652316:atrtf2-2He AT1G32690.1 Arabidopsis thaliana 0.33 Unknown SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G32710.1 Arabidopsis thaliana 0.45 Cytochrome c oxidase, subunit Vib family protein SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq AT1G32763.1 Arabidopsis thaliana 0.32 Cysteine-rich protein SRR1046863:GSM1287128: Arabidopsis thaliana Ler-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G32770.1 Arabidopsis thaliana 0.49 NAC domain containing protein 12 SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G32840.1 Arabidopsis thaliana 0.42 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G32850.1 Arabidopsis thaliana 0.44 ubiquitin-specific protease 11 SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G32860.1 Arabidopsis thaliana 0.47 Glycosyl hydrolase superfamily protein SRR446032:Vir.1h.B AT1G32870.1 Arabidopsis thaliana 0.33 NAC domain protein 13 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G32870.2 Arabidopsis thaliana 0.53 NAC domain protein 13 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G32880.1 Arabidopsis thaliana 0.77 ARM repeat superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G32910.1 Arabidopsis thaliana 0.60 HXXXD-type acyl-transferase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G32992.1 Arabidopsis thaliana 0.87 MIR856a; miRNA SRR1257402:GSM1371364: mock Col0 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT1G33030.1 Arabidopsis thaliana 0.33 O-methyltransferase family protein SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression AT1G33055.1 Arabidopsis thaliana 0.35 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT1G33070.1 Arabidopsis thaliana 0.81 MADS-box family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G33090.1 Arabidopsis thaliana 0.87 MATE efflux family protein SRR364677:GFP sample AT1G33130.1 Arabidopsis thaliana 0.37 transposable element gene SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G33135.1 Arabidopsis thaliana 0.32 transposable element gene SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G33160.1 Arabidopsis thaliana 0.50 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G33230.1 Arabidopsis thaliana 0.40 TMPIT-like protein SRR1652314:atrtf2-1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G33250.1 Arabidopsis thaliana 0.42 Protein of unknown function (DUF604) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G33260.1 Arabidopsis thaliana 0.39 Protein kinase superfamily protein SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT1G33260.2 Arabidopsis thaliana 0.79 Protein kinase superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G33270.1 Arabidopsis thaliana 0.51 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G33270.2 Arabidopsis thaliana 0.67 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G33280.1 Arabidopsis thaliana 0.62 NAC domain containing protein 15 SRR364678:nonGFP sample AT1G33290.1 Arabidopsis thaliana 0.35 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1652314:atrtf2-1 AT1G33300.1 Arabidopsis thaliana 0.74 transposable element gene SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G33320.1 Arabidopsis thaliana 0.32 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein SRR1046896:GSM1287161: Arabidopsis thaliana Zu-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G33350.1 Arabidopsis thaliana 0.52 Pentatricopeptide repeat (PPR) superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G33370.1 Arabidopsis thaliana 0.39 pre-tRNA SRR345561:GSM798295: mRNASeq_WT_rep1 SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT1G33415.1 Arabidopsis thaliana 0.33 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G33480.1 Arabidopsis thaliana 0.45 RING/U-box superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G33490.1 Arabidopsis thaliana 0.43 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G33540.1 Arabidopsis thaliana 0.31 serine carboxypeptidase-like 18 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G33550.1 Arabidopsis thaliana 0.53 transposable element gene SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G33607.1 Arabidopsis thaliana 0.50 Defensin-like (DEFL) family protein ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT1G33612.1 Arabidopsis thaliana 0.62 Leucine-rich repeat (LRR) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G33660.1 Arabidopsis thaliana 0.30 peroxidase family protein SRR1652314:atrtf2-1 SRR1652317:atrtf2-2Ho AT1G33670.1 Arabidopsis thaliana 0.83 Leucine-rich repeat (LRR) family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G33709.1 Arabidopsis thaliana 0.94 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G33760.1 Arabidopsis thaliana 0.74 Integrase-type DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G33780.1 Arabidopsis thaliana 0.35 Protein of unknown function (DUF179) SRR1652314:atrtf2-1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G33790.1 Arabidopsis thaliana 0.31 jacalin lectin family protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G33800.1 Arabidopsis thaliana 0.38 Protein of unknown function (DUF579) SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT1G33820.1 Arabidopsis thaliana 0.31 Unknown SRR307069:GSM756822: Col x Ler endosperm RNA-seq SRR307070:GSM756822: Col x Ler endosperm RNA-seq SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT1G33870.1 Arabidopsis thaliana 0.37 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G33880.1 Arabidopsis thaliana 0.57 Avirulence induced gene (AIG1) family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G33925.1 Arabidopsis thaliana 0.70 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT1G33970.2 Arabidopsis thaliana 0.31 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1652314:atrtf2-1 AT1G33980.1 Arabidopsis thaliana 0.52 Smg-4/UPF3 family protein SRR1652314:atrtf2-1 AT1G33990.1 Arabidopsis thaliana 0.36 methyl esterase 14 SRR1652314:atrtf2-1 AT1G34041.1 Arabidopsis thaliana 0.41 Unknown SRR392126:GSM852816: mRNA-seq in flc, technical replicate 1; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT1G34047.1 Arabidopsis thaliana 0.42 Defensin-like (DEFL) family protein SRR364678:nonGFP sample AT1G34050.1 Arabidopsis thaliana 0.43 Ankyrin repeat family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G34095.1 Arabidopsis thaliana 0.73 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G34110.1 Arabidopsis thaliana 0.49 Leucine-rich receptor-like protein kinase family protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G34120.1 Arabidopsis thaliana 0.56 inositol polyphosphate 5-phosphatase I ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G34180.2 Arabidopsis thaliana 0.33 NAC domain containing protein 16 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G34315.1 Arabidopsis thaliana 0.37 Unknown SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G34330.1 Arabidopsis thaliana 0.41 Unknown SRR1260038:P-_WT_R1 AT1G34370.1 Arabidopsis thaliana 0.51 C2H2 and C2HC zinc fingers superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G34370.2 Arabidopsis thaliana 0.55 C2H2 and C2HC zinc fingers superfamily protein SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT1G34370.3 Arabidopsis thaliana 0.32 C2H2 and C2HC zinc fingers superfamily protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G34410.1 Arabidopsis thaliana 0.36 auxin response factor 21 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G34419.1 Arabidopsis thaliana 0.47 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G34420.1 Arabidopsis thaliana 0.33 leucine-rich repeat transmembrane protein kinase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G34510.1 Arabidopsis thaliana 0.33 Peroxidase superfamily protein SRR1046872:GSM1287137: Arabidopsis thaliana Oy-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G34520.1 Arabidopsis thaliana 0.37 MBOAT (membrane bound O-acyl transferase) family protein SRR926212:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 3 AT1G34540.1 Arabidopsis thaliana 0.83 cytochrome P450, family 94, subfamily D, polypeptide 1 SRR364677:GFP sample AT1G34575.1 Arabidopsis thaliana 0.34 FAD-binding Berberine family protein SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT1G34590.1 Arabidopsis thaliana 0.30 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G34650.1 Arabidopsis thaliana 0.59 homeodomain GLABROUS 10 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G34844.1 Arabidopsis thaliana 0.39 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G34910.1 Arabidopsis thaliana 0.58 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT1G35140.1 Arabidopsis thaliana 0.67 Phosphate-responsive 1 family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G35143.1 Arabidopsis thaliana 0.43 transposable element gene SRR978409:18O at 50mm 1hr SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G35180.1 Arabidopsis thaliana 0.53 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G35181.1 Arabidopsis thaliana 0.64 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT1G35210.1 Arabidopsis thaliana 0.71 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G35242.1 Arabidopsis thaliana 0.48 Unknown SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G35290.1 Arabidopsis thaliana 0.63 Thioesterase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G35333.1 Arabidopsis thaliana 0.36 Unknown SRR307075:GSM756824: Ler x Col endosperm RNA-seq AT1G35420.2 Arabidopsis thaliana 0.44 alpha/beta-Hydrolases superfamily protein SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT1G35461.1 Arabidopsis thaliana 0.91 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G35467.1 Arabidopsis thaliana 0.31 RALF-like 5 SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq SRR388669:GSM847338: WT-Flower-RNAseq-2; Arabidopsis thaliana; RNA-Seq SRR1257407:GSM1371369: infected T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G35490.1 Arabidopsis thaliana 0.88 bZIP family transcription factor SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G35500.1 Arabidopsis thaliana 0.44 Unknown SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G35501.1 Arabidopsis thaliana 0.32 MIR773a; miRNA SRR345564:GSM798298: mRNASeq_skip_rep2 SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq SRR307072:GSM756823: Ler x Col embryo RNA-seq AT1G35537.1 Arabidopsis thaliana 0.37 Defensin-like (DEFL) family protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT1G35614.1 Arabidopsis thaliana 0.44 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G35617.1 Arabidopsis thaliana 0.50 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT1G35647.1 Arabidopsis thaliana 0.64 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G35670.1 Arabidopsis thaliana 0.56 calcium-dependent protein kinase 2 SRR364677:GFP sample AT1G35730.1 Arabidopsis thaliana 0.32 pumilio 9 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR1159840:GSM1321713: Set_2_bio_replicate_2-morc6mom1; Arabidopsis thaliana; RNA-Seq SRR493046:GSM925654: crh6-1 mRNA EMS batch 2; Arabidopsis thaliana; RNA-Seq AT1G35830.1 Arabidopsis thaliana 0.31 VQ motif-containing protein SRR1144845:be1-3 2 days on SIM AT1G35910.1 Arabidopsis thaliana 0.33 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G35995.1 Arabidopsis thaliana 0.32 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G36030.1 Arabidopsis thaliana 0.54 F-box family protein SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G36050.2 Arabidopsis thaliana 0.47 Endoplasmic reticulum vesicle transporter protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G36120.1 Arabidopsis thaliana 0.51 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G36180.1 Arabidopsis thaliana 0.48 acetyl-CoA carboxylase 2 SRR1144842:be1-3 7 days on CIM SRR1144845:be1-3 2 days on SIM AT1G36190.1 Arabidopsis thaliana 0.49 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G36240.1 Arabidopsis thaliana 0.41 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT1G36260.1 Arabidopsis thaliana 0.35 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G36340.1 Arabidopsis thaliana 0.43 ubiquitin-conjugating enzyme 31 SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G36370.1 Arabidopsis thaliana 0.56 serine hydroxymethyltransferase 7 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G36395.1 Arabidopsis thaliana 0.38 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT1G36460.1 Arabidopsis thaliana 0.31 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G36540.1 Arabidopsis thaliana 0.47 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G36595.1 Arabidopsis thaliana 0.37 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G36745.1 Arabidopsis thaliana 0.34 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G36770.1 Arabidopsis thaliana 0.93 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G36810.1 Arabidopsis thaliana 0.46 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT1G37007.1 Arabidopsis thaliana 0.35 Unknown SRR1508382:GSM1429460: Hen-16-Input2; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR499987:sig6 replicate 1 SRR477076:GSM912635: Col-0 RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq ERR351333:arabidopsis_thaliana_floral_meristem_atlas SRR925686:hda6-7 mutant polyA RNA, non-stranded AT1G37010.1 Arabidopsis thaliana 0.34 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G37015.1 Arabidopsis thaliana 0.59 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G37060.1 Arabidopsis thaliana 0.93 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G37080.1 Arabidopsis thaliana 0.36 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G37140.1 Arabidopsis thaliana 0.52 MEI2 C-terminal RRM only like 1 ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT1G37603.1 Arabidopsis thaliana 0.36 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G38176.1 Arabidopsis thaliana 0.71 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G38194.1 Arabidopsis thaliana 0.68 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G38360.1 Arabidopsis thaliana 0.39 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT1G38380.1 Arabidopsis thaliana 0.67 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G38390.1 Arabidopsis thaliana 0.63 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT1G38430.1 Arabidopsis thaliana 0.45 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT1G38630.1 Arabidopsis thaliana 0.50 Unknown SRR1037375:RNA-Seq SRR1037376:RNA-Seq-RNA-Seq_replicate_2 AT1G38950.1 Arabidopsis thaliana 0.46 Unknown SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G40105.1 Arabidopsis thaliana 0.54 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT1G41726.1 Arabidopsis thaliana 0.52 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G41830.1 Arabidopsis thaliana 0.35 SKU5-similar 6 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G41875.1 Arabidopsis thaliana 0.45 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT1G41890.1 Arabidopsis thaliana 0.48 Unknown SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G41900.1 Arabidopsis thaliana 0.31 transposable element gene SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G42050.1 Arabidopsis thaliana 0.40 transposable element gene SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G42120.1 Arabidopsis thaliana 0.82 pre-tRNA SRR671946:GSM1077432: Root_polyA_KCl_Control_rep1; Arabidopsis thaliana; RNA-Seq AT1G42150.1 Arabidopsis thaliana 0.55 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G42210.1 Arabidopsis thaliana 0.39 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT1G42367.1 Arabidopsis thaliana 0.33 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G42440.1 Arabidopsis thaliana 0.34 Unknown SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT1G42470.1 Arabidopsis thaliana 0.45 Patched family protein SRR1652314:atrtf2-1 AT1G42520.1 Arabidopsis thaliana 0.34 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G42980.1 Arabidopsis thaliana 0.51 Actin-binding FH2 (formin homology 2) family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G42990.1 Arabidopsis thaliana 0.60 basic region/leucine zipper motif 60 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G43000.1 Arabidopsis thaliana 0.65 PLATZ transcription factor family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G43170.4 Arabidopsis thaliana 0.52 ribosomal protein 1 SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT1G43170.5 Arabidopsis thaliana 0.32 ribosomal protein 1 SRR1207198:GSM1359150: nga 3; Arabidopsis thaliana; RNA-Seq AT1G43170.7 Arabidopsis thaliana 0.47 ribosomal protein 1 SRR1046895:GSM1287160: Arabidopsis thaliana Zu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046896:GSM1287161: Arabidopsis thaliana Zu-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046897:GSM1287162: Arabidopsis thaliana Zu-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G43170.8 Arabidopsis thaliana 0.66 ribosomal protein 1 SRR1286088:P-_WT_R2 AT1G43190.2 Arabidopsis thaliana 0.45 polypyrimidine tract-binding protein 3 SRR584131:GSM1017172: PTB_OE3_R1; Arabidopsis thaliana; RNA-Seq SRR584133:GSM1017174: PTB_OE3_R2; Arabidopsis thaliana; RNA-Seq AT1G43624.1 Arabidopsis thaliana 0.91 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G43665.1 Arabidopsis thaliana 0.50 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G43667.1 Arabidopsis thaliana 0.52 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G43730.1 Arabidopsis thaliana 0.89 RNA-directed DNA polymerase (reverse transcriptase)-related family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G43750.1 Arabidopsis thaliana 0.39 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G43800.1 Arabidopsis thaliana 0.47 Plant stearoyl-acyl-carrier-protein desaturase family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G43820.1 Arabidopsis thaliana 0.35 pre-tRNA SRR499983:col-0 replicate 1 AT1G43860.1 Arabidopsis thaliana 0.38 sequence-specific DNA binding transcription factors SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G43870.1 Arabidopsis thaliana 0.49 transposable element gene SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G43880.1 Arabidopsis thaliana 0.30 transposable element gene SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G43890.3 Arabidopsis thaliana 0.54 RAB GTPASE HOMOLOG B18 SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G44010.1 Arabidopsis thaliana 0.32 Unknown SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G44040.1 Arabidopsis thaliana 0.46 Unknown SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT1G44060.1 Arabidopsis thaliana 0.48 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G44120.1 Arabidopsis thaliana 0.81 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G44125.1 Arabidopsis thaliana 0.74 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G44130.1 Arabidopsis thaliana 0.69 Eukaryotic aspartyl protease family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G44150.1 Arabidopsis thaliana 0.63 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G44160.1 Arabidopsis thaliana 0.89 HSP40/DnaJ peptide-binding protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G44191.1 Arabidopsis thaliana 0.31 ECA1 gametogenesis related family protein DRR008476: AT1G44414.1 Arabidopsis thaliana 0.34 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G44446.3 Arabidopsis thaliana 0.64 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain SRR1652314:atrtf2-1 AT1G44542.1 Arabidopsis thaliana 0.55 Cyclase family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G44575.2 Arabidopsis thaliana 0.42 Chlorophyll A-B binding family protein SRR978413:18O at 0mm 24hr SRR975544:S26 at 50mn 24hr AT1G44608.1 Arabidopsis thaliana 0.64 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G44830.1 Arabidopsis thaliana 0.54 Integrase-type DNA-binding superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G44835.2 Arabidopsis thaliana 0.83 YbaK/aminoacyl-tRNA synthetase-associated domain SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G44940.1 Arabidopsis thaliana 0.35 Unknown SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G44940.2 Arabidopsis thaliana 0.57 Unknown SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq AT1G45020.1 Arabidopsis thaliana 0.65 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G45170.1 Arabidopsis thaliana 0.42 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G45201.2 Arabidopsis thaliana 0.32 triacylglycerol lipase-like 1 SRR1548692:GSM1477537: lsm4 rep 3,1; Arabidopsis thaliana; RNA-Seq SRR1548693:GSM1477538: lsm4 rep 3,2; Arabidopsis thaliana; RNA-Seq AT1G45223.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF784) SRR953399:GSM1210576: inflorescence; Arabidopsis thaliana; RNA-Seq AT1G45227.1 Arabidopsis thaliana 0.32 Unknown SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq SRR953399:GSM1210576: inflorescence; Arabidopsis thaliana; RNA-Seq AT1G45249.1 Arabidopsis thaliana 0.54 abscisic acid responsive elements-binding factor 2 SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G45474.1 Arabidopsis thaliana 0.31 photosystem I light harvesting complex gene 5 SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq AT1G46336.1 Arabidopsis thaliana 0.58 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT1G46696.1 Arabidopsis thaliana 0.31 Protein of unknown function, DUF601 SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G47210.2 Arabidopsis thaliana 0.82 cyclin-dependent protein kinase 3;2 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G47265.1 Arabidopsis thaliana 0.44 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G47270.1 Arabidopsis thaliana 0.83 tubby like protein 6 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G47270.2 Arabidopsis thaliana 0.83 tubby like protein 6 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G47280.1 Arabidopsis thaliana 0.89 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G47317.1 Arabidopsis thaliana 0.53 Unknown SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G47320.1 Arabidopsis thaliana 0.47 transposable element gene SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G47395.1 Arabidopsis thaliana 0.63 Unknown SRR1652315:prp8-7 AT1G47400.1 Arabidopsis thaliana 0.74 Unknown SRR1652315:prp8-7 AT1G47485.1 Arabidopsis thaliana 0.42 Unknown SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G47497.2 Arabidopsis thaliana 0.53 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G47510.2 Arabidopsis thaliana 0.35 inositol polyphosphate 5-phosphatase 11 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G47560.1 Arabidopsis thaliana 0.45 exocyst complex component sec3B SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G47590.1 Arabidopsis thaliana 0.36 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G47660.1 Arabidopsis thaliana 0.72 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G47740.1 Arabidopsis thaliana 0.34 PPPDE putative thiol peptidase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G47810.1 Arabidopsis thaliana 0.30 F-box and associated interaction domains-containing protein SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G47813.1 Arabidopsis thaliana 0.31 Unknown SRR1046942:GSM1287200: Zu-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT1G47870.2 Arabidopsis thaliana 0.39 winged-helix DNA-binding transcription factor family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT1G47880.1 Arabidopsis thaliana 0.79 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G47915.1 Arabidopsis thaliana 0.86 F-box family protein SRR1257396:GSM1371358: infected NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT1G47946.1 Arabidopsis thaliana 0.60 Unknown SRR068978:GSM607730: Ler-WTxCol-met1_Endosperm AT1G48020.1 Arabidopsis thaliana 0.91 pectin methylesterase inhibitor 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G48030.2 Arabidopsis thaliana 0.43 mitochondrial lipoamide dehydrogenase 1 SRR1046870:GSM1287135: Arabidopsis thaliana No-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G48145.1 Arabidopsis thaliana 0.88 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G48160.1 Arabidopsis thaliana 0.46 signal recognition particle 19 kDa protein, putative / SRP19, putative SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G48240.1 Arabidopsis thaliana 0.49 novel plant snare 12 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G48267.1 Arabidopsis thaliana 0.80 MIR161; miRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT1G48325.1 Arabidopsis thaliana 0.61 Expressed protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G48340.1 Arabidopsis thaliana 0.48 Unknown SRR477077:GSM912636: bzr1-1D RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477078:GSM912637: bzr1-1D RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR402998:GSM867678: bzr1-1D_PAC_PPZ; Arabidopsis thaliana; RNA-Seq SRR515493:GSM951968: bzr1-1D_PAC_PPZ repeat; Arabidopsis thaliana; RNA-Seq AT1G48360.1 Arabidopsis thaliana 0.45 zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides SRR1652314:atrtf2-1 AT1G48490.2 Arabidopsis thaliana 0.41 Protein kinase superfamily protein SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT1G48520.2 Arabidopsis thaliana 0.62 GLU-ADT subunit B SRR1652314:atrtf2-1 AT1G48520.3 Arabidopsis thaliana 0.78 GLU-ADT subunit B SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT1G48590.1 Arabidopsis thaliana 0.35 Calcium-dependent lipid-binding (CaLB domain) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G48640.1 Arabidopsis thaliana 0.65 Transmembrane amino acid transporter family protein SRR364677:GFP sample AT1G48650.1 Arabidopsis thaliana 0.35 DEA(D/H)-box RNA helicase family protein SRR584123:GSM1017164: NMD_UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G48700.1 Arabidopsis thaliana 0.75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G48740.1 Arabidopsis thaliana 0.69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G48740.2 Arabidopsis thaliana 0.62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G48742.1 Arabidopsis thaliana 0.83 MIR157D; miRNA SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT1G48760.2 Arabidopsis thaliana 0.32 delta-adaptin SRR1046915:GSM1287173: Hi-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046921:GSM1287179: Mt-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G48800.1 Arabidopsis thaliana 0.63 Terpenoid cyclases/Protein prenyltransferases superfamily protein SRR314817:GSM764081: Can_0_root_validation_rep1 AT1G48860.2 Arabidopsis thaliana 0.47 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G48870.1 Arabidopsis thaliana 0.41 Transducin/WD40 repeat-like superfamily protein SRR1144842:be1-3 7 days on CIM AT1G48910.1 Arabidopsis thaliana 0.59 Flavin-containing monooxygenase family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G49000.1 Arabidopsis thaliana 0.40 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G49030.1 Arabidopsis thaliana 0.60 PLAC8 family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G49040.3 Arabidopsis thaliana 0.32 stomatal cytokinesis defective / SCD1 protein (SCD1) SRR392128:GSM852818: mRNA-seq in flc, technical replicate 3; Arabidopsis thaliana; RNA-Seq AT1G49080.1 Arabidopsis thaliana 0.37 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G49150.1 Arabidopsis thaliana 0.55 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G49180.1 Arabidopsis thaliana 0.39 protein kinase family protein SRR1652314:atrtf2-1 AT1G49190.1 Arabidopsis thaliana 0.64 response regulator 19 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G49210.1 Arabidopsis thaliana 0.32 RING/U-box superfamily protein SRR1652314:atrtf2-1 AT1G49270.1 Arabidopsis thaliana 0.95 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G49290.1 Arabidopsis thaliana 0.78 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G49470.1 Arabidopsis thaliana 0.39 Family of unknown function (DUF716) ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT1G49490.1 Arabidopsis thaliana 0.96 Leucine-rich repeat (LRR) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G49570.1 Arabidopsis thaliana 0.47 Peroxidase superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G49700.1 Arabidopsis thaliana 0.61 Plant protein 1589 of unknown function SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT1G49710.1 Arabidopsis thaliana 0.40 fucosyltransferase 12 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G49720.2 Arabidopsis thaliana 0.51 abscisic acid responsive element-binding factor 1 SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G49780.1 Arabidopsis thaliana 0.31 plant U-box 26 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G49790.1 Arabidopsis thaliana 0.79 F-box associated ubiquitination effector family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G49800.1 Arabidopsis thaliana 0.41 Unknown SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G49810.1 Arabidopsis thaliana 0.54 Na+/H+ antiporter 2 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G49830.1 Arabidopsis thaliana 0.41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT1G49870.2 Arabidopsis thaliana 0.38 Unknown SRR307072:GSM756823: Ler x Col embryo RNA-seq SRR307069:GSM756822: Col x Ler endosperm RNA-seq SRR307070:GSM756822: Col x Ler endosperm RNA-seq AT1G49900.1 Arabidopsis thaliana 0.32 C2H2 type zinc finger transcription factor family SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G49938.1 Arabidopsis thaliana 0.80 Unknown SRR1257389:GSM1371351: mock Col0 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G49950.3 Arabidopsis thaliana 0.40 telomere repeat binding factor 1 SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G50050.1 Arabidopsis thaliana 0.31 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein SRR364678:nonGFP sample AT1G50080.1 Arabidopsis thaliana 0.49 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G50090.1 Arabidopsis thaliana 0.76 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G50290.1 Arabidopsis thaliana 0.46 Unknown SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G50340.1 Arabidopsis thaliana 0.55 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G50400.1 Arabidopsis thaliana 0.49 Eukaryotic porin family protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT1G50410.1 Arabidopsis thaliana 0.37 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related SRR1652314:atrtf2-1 AT1G50580.1 Arabidopsis thaliana 0.59 UDP-Glycosyltransferase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G50610.1 Arabidopsis thaliana 0.80 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G50630.2 Arabidopsis thaliana 0.73 Protein of unknown function (DUF3537) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G50670.1 Arabidopsis thaliana 0.36 OTU-like cysteine protease family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G50720.1 Arabidopsis thaliana 0.36 Stigma-specific Stig1 family protein SRR1260036:P+_hps7_R1 AT1G50760.1 Arabidopsis thaliana 0.47 Aminotransferase-like, plant mobile domain family protein SRR514998:GSM736442: At_mRNASeq AT1G50810.1 Arabidopsis thaliana 0.31 transposable element gene SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G50850.1 Arabidopsis thaliana 0.40 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G50890.1 Arabidopsis thaliana 0.67 ARM repeat superfamily protein SRR364677:GFP sample AT1G50940.1 Arabidopsis thaliana 0.35 electron transfer flavoprotein alpha SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G50954.1 Arabidopsis thaliana 0.69 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT1G50960.1 Arabidopsis thaliana 0.33 gibberellin 2-oxidase 7 SRR907283:SAD1 dynamically regulates alternative splicing and stress tolerance SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G50990.1 Arabidopsis thaliana 0.68 Protein kinase protein with tetratricopeptide repeat domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G51010.1 Arabidopsis thaliana 0.32 Unknown SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA AT1G51035.1 Arabidopsis thaliana 0.40 Unknown SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA AT1G51060.1 Arabidopsis thaliana 0.41 histone H2A 10 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G51080.1 Arabidopsis thaliana 0.36 Unknown SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G51140.1 Arabidopsis thaliana 0.51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G51170.1 Arabidopsis thaliana 0.35 Protein kinase superfamily protein SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G51172.1 Arabidopsis thaliana 0.36 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G51190.1 Arabidopsis thaliana 0.43 Integrase-type DNA-binding superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G51200.4 Arabidopsis thaliana 0.33 A20/AN1-like zinc finger family protein SRR520237:GSM958257: WT-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520238:GSM958258: WT-RNA-2; Arabidopsis thaliana; RNA-Seq SRR520239:GSM958259: WT-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520240:GSM958260: pif3-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520241:GSM958261: pif3-RNA-2; Arabidopsis thaliana; RNA-Seq SRR520242:GSM958262: pif3-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520243:GSM958263: pif145-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520244:GSM958264: pif145-RNA-2; Arabidopsis thaliana; RNA-Seq SRR520245:GSM958265: pif145-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520246:GSM958266: pifq-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520247:GSM958267: pifq-RNA-2; Arabidopsis thaliana; RNA-Seq SRR520248:GSM958268: pifq-RNA-3; Arabidopsis thaliana; RNA-Seq SRR627629:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627630:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627631:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627632:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627633:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627634:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627635:GSM1047658: pif1-RNA; Arabidopsis thaliana; RNA-Seq SRR627636:GSM1047658: pif1-RNA; Arabidopsis thaliana; RNA-Seq SRR627637:GSM1047658: pif1-RNA; Arabidopsis thaliana; RNA-Seq SRR627638:GSM1047658: pif1-RNA; Arabidopsis thaliana; RNA-Seq SRR627639:GSM1047658: pif1-RNA; Arabidopsis thaliana; RNA-Seq SRR627640:GSM1047658: pif1-RNA; Arabidopsis thaliana; RNA-Seq SRR627641:GSM1047659: pif3-RNA; Arabidopsis thaliana; RNA-Seq SRR627642:GSM1047659: pif3-RNA; Arabidopsis thaliana; RNA-Seq SRR627643:GSM1047659: pif3-RNA; Arabidopsis thaliana; RNA-Seq SRR627644:GSM1047659: pif3-RNA; Arabidopsis thaliana; RNA-Seq SRR627645:GSM1047659: pif3-RNA; Arabidopsis thaliana; RNA-Seq SRR627646:GSM1047659: pif3-RNA; Arabidopsis thaliana; RNA-Seq SRR627647:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627648:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627649:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627650:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627651:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627652:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627653:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627654:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627655:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627656:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627659:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq SRR627660:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq SRR627661:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq SRR627662:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq SRR627663:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq SRR627664:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq SRR627665:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627666:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627667:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627668:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627669:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627670:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627671:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq SRR627672:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq SRR627673:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq SRR627674:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq SRR627675:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq SRR627676:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq SRR627677:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627678:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627679:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627680:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627681:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627682:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627683:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq SRR627684:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq SRR627685:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq SRR627686:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq SRR627687:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq SRR627688:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq AT1G51210.1 Arabidopsis thaliana 0.47 UDP-Glycosyltransferase superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G51250.1 Arabidopsis thaliana 0.93 Plant self-incompatibility protein S1 family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G51260.1 Arabidopsis thaliana 0.73 lysophosphatidyl acyltransferase 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G51270.4 Arabidopsis thaliana 0.47 structural molecules;transmembrane receptors;structural molecules SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT1G51320.1 Arabidopsis thaliana 0.49 F-box and associated interaction domains-containing protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G51330.1 Arabidopsis thaliana 0.56 Serine protease inhibitor (SERPIN) family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G51340.1 Arabidopsis thaliana 0.84 MATE efflux family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G51340.2 Arabidopsis thaliana 0.86 MATE efflux family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G51355.1 Arabidopsis thaliana 0.43 Unknown SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G51370.1 Arabidopsis thaliana 0.34 F-box/RNI-like/FBD-like domains-containing protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G51410.1 Arabidopsis thaliana 0.41 NAD(P)-binding Rossmann-fold superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G51470.1 Arabidopsis thaliana 0.60 beta glucosidase 35 SRR364678:nonGFP sample AT1G51540.1 Arabidopsis thaliana 0.54 Galactose oxidase/kelch repeat superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G51620.1 Arabidopsis thaliana 0.65 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G51620.2 Arabidopsis thaliana 0.55 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G51640.1 Arabidopsis thaliana 0.34 exocyst subunit exo70 family protein G2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT1G51645.1 Arabidopsis thaliana 0.38 other RNA SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries AT1G51680.1 Arabidopsis thaliana 0.38 4-coumarate:CoA ligase 1 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G51700.1 Arabidopsis thaliana 0.63 DOF zinc finger protein 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G51710.1 Arabidopsis thaliana 0.39 ubiquitin-specific protease 6 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G51745.1 Arabidopsis thaliana 0.38 Tudor/PWWP/MBT superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G51770.1 Arabidopsis thaliana 0.67 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G51780.1 Arabidopsis thaliana 0.38 IAA-leucine resistant (ILR)-like gene 5 SRR907286:SAD1 dynamically regulates alternative splicing and stress tolerance SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq SRR446044:Vir.12h.B AT1G51802.1 Arabidopsis thaliana 0.64 Unknown SRR446031:Vir.1h.A AT1G51810.1 Arabidopsis thaliana 0.72 Leucine-rich repeat protein kinase family protein SRR364677:GFP sample AT1G51820.1 Arabidopsis thaliana 0.59 Leucine-rich repeat protein kinase family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G51823.1 Arabidopsis thaliana 0.84 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT1G51840.1 Arabidopsis thaliana 0.37 protein kinase-related SRR1046893:GSM1287158: Arabidopsis thaliana Wu-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G51850.1 Arabidopsis thaliana 0.42 Leucine-rich repeat protein kinase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G51870.1 Arabidopsis thaliana 0.65 protein kinase family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G51890.2 Arabidopsis thaliana 0.31 Leucine-rich repeat protein kinase family protein SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT1G51910.1 Arabidopsis thaliana 0.75 Leucine-rich repeat protein kinase family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G51915.1 Arabidopsis thaliana 0.35 cryptdin protein-related SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G51920.1 Arabidopsis thaliana 0.40 Unknown SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT1G51940.1 Arabidopsis thaliana 0.51 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein SRR1652314:atrtf2-1 AT1G51990.1 Arabidopsis thaliana 0.32 O-methyltransferase family protein SRR1046881:GSM1287146: Arabidopsis thaliana Sf-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046896:GSM1287161: Arabidopsis thaliana Zu-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G52000.1 Arabidopsis thaliana 0.34 Mannose-binding lectin superfamily protein SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT1G52040.1 Arabidopsis thaliana 0.36 myrosinase-binding protein 1 SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G52050.1 Arabidopsis thaliana 0.72 Mannose-binding lectin superfamily protein SRR364678:nonGFP sample AT1G52060.1 Arabidopsis thaliana 0.51 Mannose-binding lectin superfamily protein SRR364678:nonGFP sample AT1G52085.1 Arabidopsis thaliana 0.79 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G52120.1 Arabidopsis thaliana 0.34 Mannose-binding lectin superfamily protein SRR1524941:iron-deficiency sample #1 SRR1524945:iron-deficiency sample #2 SRR1524946:iron-deficiency sample #3 AT1G52150.3 Arabidopsis thaliana 0.37 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein SRR1652314:atrtf2-1 AT1G52240.1 Arabidopsis thaliana 0.70 RHO guanyl-nucleotide exchange factor 11 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G52240.2 Arabidopsis thaliana 0.39 RHO guanyl-nucleotide exchange factor 11 SRR1019438:GSM1252264: Col-0 + BR RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019439:GSM1252265: Col-0 + BR RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample AT1G52280.1 Arabidopsis thaliana 0.43 RAB GTPase homolog G3D ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G52343.1 Arabidopsis thaliana 0.37 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G52360.2 Arabidopsis thaliana 0.40 Coatomer, beta' subunit SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G52390.1 Arabidopsis thaliana 0.95 Unknown SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G52400.2 Arabidopsis thaliana 0.85 beta glucosidase 18 ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G52560.1 Arabidopsis thaliana 0.64 HSP20-like chaperones superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G52560.2 Arabidopsis thaliana 0.41 HSP20-like chaperones superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G52580.1 Arabidopsis thaliana 0.93 RHOMBOID-like protein 5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G52640.1 Arabidopsis thaliana 0.31 Pentatricopeptide repeat (PPR) superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G52660.1 Arabidopsis thaliana 0.41 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR364677:GFP sample AT1G52695.1 Arabidopsis thaliana 0.35 alpha/beta-Hydrolases superfamily protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G52696.1 Arabidopsis thaliana 0.31 Unknown SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G52750.1 Arabidopsis thaliana 0.48 alpha/beta-Hydrolases superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G52770.1 Arabidopsis thaliana 0.30 Phototropic-responsive NPH3 family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G52830.1 Arabidopsis thaliana 0.46 indole-3-acetic acid 6 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G52857.1 Arabidopsis thaliana 0.74 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G52870.1 Arabidopsis thaliana 0.38 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G52890.1 Arabidopsis thaliana 0.30 NAC domain containing protein 19 SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G52900.1 Arabidopsis thaliana 0.47 Toll-Interleukin-Resistance (TIR) domain family protein SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT1G52910.1 Arabidopsis thaliana 0.51 Protein of unknown function (DUF1218) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G53010.1 Arabidopsis thaliana 0.35 RING/U-box superfamily protein SRR1105586:GSM1303959: fae1_11-12_A; Arabidopsis thaliana; RNA-Seq SRR1105588:GSM1303961: fae1_11-12_C; Arabidopsis thaliana; RNA-Seq AT1G53039.1 Arabidopsis thaliana 0.62 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G53060.1 Arabidopsis thaliana 0.31 Legume lectin family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G53110.1 Arabidopsis thaliana 0.36 Unknown SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G53165.1 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR1652314:atrtf2-1 AT1G53180.1 Arabidopsis thaliana 0.50 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G53190.2 Arabidopsis thaliana 0.64 RING/U-box superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G53270.1 Arabidopsis thaliana 0.30 ABC-2 type transporter family protein ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588044:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G53290.1 Arabidopsis thaliana 0.30 Galactosyltransferase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G53310.2 Arabidopsis thaliana 0.43 phosphoenolpyruvate carboxylase 1 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G53320.1 Arabidopsis thaliana 0.49 tubby like protein 7 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G53340.1 Arabidopsis thaliana 0.47 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G53366.1 Arabidopsis thaliana 0.53 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G53380.2 Arabidopsis thaliana 0.50 Plant protein of unknown function (DUF641) SRR364677:GFP sample AT1G53410.1 Arabidopsis thaliana 0.67 pre-tRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT1G53440.1 Arabidopsis thaliana 0.62 Leucine-rich repeat transmembrane protein kinase SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G53470.1 Arabidopsis thaliana 0.34 mechanosensitive channel of small conductance-like 4 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance SRR364677:GFP sample SRR364678:nonGFP sample AT1G53540.1 Arabidopsis thaliana 0.45 HSP20-like chaperones superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G53541.1 Arabidopsis thaliana 0.59 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G53543.1 Arabidopsis thaliana 0.85 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G53550.1 Arabidopsis thaliana 0.77 F-box family protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G53570.1 Arabidopsis thaliana 0.44 mitogen-activated protein kinase kinase kinase 3 SRR1652314:atrtf2-1 AT1G53620.1 Arabidopsis thaliana 0.43 Unknown SRR446042:Avr.12h.B AT1G53640.1 Arabidopsis thaliana 0.32 Unknown SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT1G53660.1 Arabidopsis thaliana 0.75 nodulin MtN21 /EamA-like transporter family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G53680.1 Arabidopsis thaliana 0.77 glutathione S-transferase TAU 28 SRR364677:GFP sample AT1G53683.1 Arabidopsis thaliana 0.32 MIR169D; miRNA SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT1G53687.1 Arabidopsis thaliana 0.46 MIR169E; miRNA SRR515335:GSM951358: rve8_mock_1; Arabidopsis thaliana; RNA-Seq AT1G53730.1 Arabidopsis thaliana 0.32 STRUBBELIG-receptor family 6 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G53750.1 Arabidopsis thaliana 0.42 regulatory particle triple-A 1A SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G53760.1 Arabidopsis thaliana 0.33 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G53800.2 Arabidopsis thaliana 0.33 Unknown SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G53830.1 Arabidopsis thaliana 0.47 pectin methylesterase 2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G53850.1 Arabidopsis thaliana 0.35 20S proteasome alpha subunit E1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G53850.2 Arabidopsis thaliana 0.42 20S proteasome alpha subunit E1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G53860.1 Arabidopsis thaliana 0.53 Remorin family protein SRR1144843:WS 7 days on CIM AT1G53890.1 Arabidopsis thaliana 0.66 Protein of unknown function (DUF567) SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G53910.1 Arabidopsis thaliana 0.38 related to AP2 12 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G53920.1 Arabidopsis thaliana 0.39 GDSL-motif lipase 5 SRR364677:GFP sample AT1G53950.1 Arabidopsis thaliana 0.44 Ubiquitin-like superfamily protein SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT1G53990.1 Arabidopsis thaliana 0.52 GDSL-motif lipase 3 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G54000.1 Arabidopsis thaliana 0.84 GDSL-like Lipase/Acylhydrolase superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G54020.1 Arabidopsis thaliana 0.34 GDSL-like Lipase/Acylhydrolase superfamily protein SRR1013923:responses to BL AT1G54030.1 Arabidopsis thaliana 0.49 GDSL-like Lipase/Acylhydrolase superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G54050.1 Arabidopsis thaliana 0.48 HSP20-like chaperones superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G54070.1 Arabidopsis thaliana 0.94 Dormancy/auxin associated family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G54120.1 Arabidopsis thaliana 0.53 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G54215.1 Arabidopsis thaliana 0.82 proline-rich family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G54217.3 Arabidopsis thaliana 0.62 Ribosomal protein L18ae family SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G54240.1 Arabidopsis thaliana 0.42 winged-helix DNA-binding transcription factor family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G54280.1 Arabidopsis thaliana 0.67 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G54290.1 Arabidopsis thaliana 0.32 Translation initiation factor SUI1 family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G54310.1 Arabidopsis thaliana 0.33 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G54355.1 Arabidopsis thaliana 0.53 other RNA SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G54390.5 Arabidopsis thaliana 0.78 PHD finger protein-related SRR1652315:prp8-7 AT1G54400.1 Arabidopsis thaliana 0.86 HSP20-like chaperones superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G54410.1 Arabidopsis thaliana 0.49 dehydrin family protein SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G54440.1 Arabidopsis thaliana 0.53 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G54610.2 Arabidopsis thaliana 0.43 Protein kinase superfamily protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT1G54640.1 Arabidopsis thaliana 0.39 F-box family protein-related SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G54690.1 Arabidopsis thaliana 0.43 gamma histone variant H2AX ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G54740.1 Arabidopsis thaliana 0.35 Protein of unknown function (DUF3049) SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT1G54790.1 Arabidopsis thaliana 0.37 GDSL-like Lipase/Acylhydrolase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR1046861:GSM1287126: Arabidopsis thaliana Kn-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G54820.1 Arabidopsis thaliana 0.48 Protein kinase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G54870.1 Arabidopsis thaliana 0.41 NAD(P)-binding Rossmann-fold superfamily protein SRR1105586:GSM1303959: fae1_11-12_A; Arabidopsis thaliana; RNA-Seq SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq SRR1105596:GSM1303969: CL37_11-12_B; Arabidopsis thaliana; RNA-Seq AT1G54880.1 Arabidopsis thaliana 0.43 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G54890.1 Arabidopsis thaliana 0.47 Late embryogenesis abundant (LEA) protein-related ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G54950.1 Arabidopsis thaliana 0.32 Unknown SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G54980.1 Arabidopsis thaliana 0.33 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G55010.1 Arabidopsis thaliana 0.32 plant defensin 1.5 SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT1G55020.1 Arabidopsis thaliana 0.42 lipoxygenase 1 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G55090.1 Arabidopsis thaliana 0.40 carbon-nitrogen hydrolase family protein SRR1652314:atrtf2-1 AT1G55170.1 Arabidopsis thaliana 0.54 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G55230.1 Arabidopsis thaliana 0.82 Family of unknown function (DUF716) SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G55240.1 Arabidopsis thaliana 0.58 Family of unknown function (DUF716) SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT1G55280.1 Arabidopsis thaliana 0.32 Lipase/lipooxygenase, PLAT/LH2 family protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G55290.1 Arabidopsis thaliana 0.41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR364677:GFP sample AT1G55370.1 Arabidopsis thaliana 0.38 NDH-dependent cyclic electron flow 5 SRR1652314:atrtf2-1 SRR493101:Untreated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G55390.1 Arabidopsis thaliana 0.36 Cysteine/Histidine-rich C1 domain family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G55410.1 Arabidopsis thaliana 0.58 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G55420.1 Arabidopsis thaliana 0.49 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G55490.1 Arabidopsis thaliana 0.35 chaperonin 60 beta SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G55510.1 Arabidopsis thaliana 0.57 branched-chain alpha-keto acid decarboxylase E1 beta subunit SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G55525.1 Arabidopsis thaliana 0.33 other RNA SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT1G55550.1 Arabidopsis thaliana 0.53 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G55560.1 Arabidopsis thaliana 0.95 SKU5 similar 14 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G55570.1 Arabidopsis thaliana 0.67 SKU5 similar 12 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G55591.1 Arabidopsis thaliana 0.51 MIR158b; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G55620.1 Arabidopsis thaliana 0.39 chloride channel F SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR1046928:GSM1287186: Po-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT1G55625.1 Arabidopsis thaliana 1.00 pre-tRNA SRR499985:col-0 replicate 2 AT1G55650.1 Arabidopsis thaliana 0.42 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G55760.1 Arabidopsis thaliana 0.35 BTB/POZ domain-containing protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G55830.2 Arabidopsis thaliana 0.32 Unknown SRR1144842:be1-3 7 days on CIM AT1G55860.2 Arabidopsis thaliana 0.44 ubiquitin-protein ligase 1 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G55880.1 Arabidopsis thaliana 0.38 Pyridoxal-5'-phosphate-dependent enzyme family protein SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. AT1G55915.1 Arabidopsis thaliana 0.48 zinc ion binding ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G55920.1 Arabidopsis thaliana 0.54 serine acetyltransferase 2;1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G55930.1 Arabidopsis thaliana 0.32 CBS domain-containing protein / transporter associated domain-containing protein SRR1652314:atrtf2-1 AT1G56020.1 Arabidopsis thaliana 0.35 Unknown SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT1G56060.1 Arabidopsis thaliana 0.36 Unknown SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT1G56100.3 Arabidopsis thaliana 0.33 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT1G56120.1 Arabidopsis thaliana 0.55 Leucine-rich repeat transmembrane protein kinase SRR514998:GSM736442: At_mRNASeq SRR514999:GSM736442: At_mRNASeq AT1G56145.2 Arabidopsis thaliana 0.56 Leucine-rich repeat transmembrane protein kinase SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G56160.1 Arabidopsis thaliana 0.50 myb domain protein 72 SRR331224:arabidopsis root in control condition SRR1524941:iron-deficiency sample #1 SRR1524945:iron-deficiency sample #2 SRR1524946:iron-deficiency sample #3 SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G56165.1 Arabidopsis thaliana 0.46 other RNA SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G56180.1 Arabidopsis thaliana 0.42 Unknown SRR1652314:atrtf2-1 AT1G56220.2 Arabidopsis thaliana 0.33 Dormancy/auxin associated family protein SRR609267:GSM1025547: Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G56220.3 Arabidopsis thaliana 0.49 Dormancy/auxin associated family protein SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G56220.4 Arabidopsis thaliana 0.58 Dormancy/auxin associated family protein SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT1G56240.1 Arabidopsis thaliana 0.53 phloem protein 2-B13 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G56242.1 Arabidopsis thaliana 0.35 other RNA SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G56340.2 Arabidopsis thaliana 0.32 calreticulin 1a SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G56350.1 Arabidopsis thaliana 0.39 Peptide chain release factor 2 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G56360.1 Arabidopsis thaliana 0.38 purple acid phosphatase 6 SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT1G56423.1 Arabidopsis thaliana 0.38 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G56460.2 Arabidopsis thaliana 0.38 HIT zinc finger ;PAPA-1-like conserved region SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G56510.1 Arabidopsis thaliana 0.36 Disease resistance protein (TIR-NBS-LRR class) SRR392122:GSM852812: mRNA-seq in C24, technical replicate 1; Arabidopsis thaliana; RNA-Seq SRR392123:GSM852813: mRNA-seq in C24, technical replicate 2; Arabidopsis thaliana; RNA-Seq SRR392124:GSM852814: mRNA-seq in C24, technical replicate 3; Arabidopsis thaliana; RNA-Seq SRR392125:GSM852815: mRNA-seq in C24, technical replicate 4; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G56540.1 Arabidopsis thaliana 0.32 Disease resistance protein (TIR-NBS-LRR class) family SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G56550.1 Arabidopsis thaliana 0.33 RhamnoGalacturonan specific Xylosyltransferase 1 SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G56630.1 Arabidopsis thaliana 0.39 alpha/beta-Hydrolases superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G56660.1 Arabidopsis thaliana 0.69 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G56690.1 Arabidopsis thaliana 0.33 Pentatricopeptide repeat (PPR) superfamily protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT1G56710.1 Arabidopsis thaliana 0.36 Pectin lyase-like superfamily protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT1G57550.1 Arabidopsis thaliana 0.41 Low temperature and salt responsive protein family SRR800753:GSM1111913: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G57580.1 Arabidopsis thaliana 0.38 F-box family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G57590.1 Arabidopsis thaliana 0.40 Pectinacetylesterase family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G57650.1 Arabidopsis thaliana 0.31 ATP binding SRR1578863:GSM1507903: Te O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578864:GSM1507904: Te O3 rep2; Arabidopsis thaliana; RNA-Seq SRR1578865:GSM1507905: Te O3 rep3; Arabidopsis thaliana; RNA-Seq SRR1578869:GSM1507909: CT101 O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578870:GSM1507910: CT101 O3 rep2; Arabidopsis thaliana; RNA-Seq SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT1G57780.1 Arabidopsis thaliana 0.31 heavy-metal-associated domain-containing protein SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G57800.1 Arabidopsis thaliana 0.48 zinc finger (C3HC4-type RING finger) family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G57870.1 Arabidopsis thaliana 0.48 shaggy-like kinase 42 SRR1652314:atrtf2-1 AT1G57943.1 Arabidopsis thaliana 0.72 purine permease 17 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G58010.1 Arabidopsis thaliana 0.44 Unknown SRR364677:GFP sample SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G58037.1 Arabidopsis thaliana 0.60 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G58100.2 Arabidopsis thaliana 0.38 TCP family transcription factor SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G58122.1 Arabidopsis thaliana 0.90 conserved peptide upstream open reading frame 45 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G58180.1 Arabidopsis thaliana 0.35 beta carbonic anhydrase 6 SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT1G58180.3 Arabidopsis thaliana 0.60 beta carbonic anhydrase 6 SRR1652314:atrtf2-1 AT1G58190.2 Arabidopsis thaliana 0.60 receptor like protein 9 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G58210.1 Arabidopsis thaliana 0.41 kinase interacting family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G58225.1 Arabidopsis thaliana 0.35 Unknown SRR514998:GSM736442: At_mRNASeq AT1G58225.2 Arabidopsis thaliana 0.57 Unknown SRR513741:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 1 SRR513742:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 1 SRR513743:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513744:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G58245.1 Arabidopsis thaliana 0.42 Plant thionin family protein SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G58265.1 Arabidopsis thaliana 0.31 Cytochrome P450 superfamily protein SRR1290850:Biological replicate1 for RNA-seq_data of WT SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G58280.3 Arabidopsis thaliana 0.46 Phosphoglycerate mutase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G58300.1 Arabidopsis thaliana 0.66 heme oxygenase 4 SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G58340.1 Arabidopsis thaliana 0.32 MATE efflux family protein SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G58350.2 Arabidopsis thaliana 0.38 Putative serine esterase family protein SRR1652314:atrtf2-1 AT1G58350.3 Arabidopsis thaliana 0.31 Putative serine esterase family protein SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G58420.1 Arabidopsis thaliana 0.48 Uncharacterised conserved protein UCP031279 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G58430.1 Arabidopsis thaliana 0.37 GDSL-like Lipase/Acylhydrolase family protein SRR1061358:GSM1298726: FB1_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT1G58561.1 Arabidopsis thaliana 0.33 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT1G58848.1 Arabidopsis thaliana 0.53 Disease resistance protein (CC-NBS-LRR class) family SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT1G59500.1 Arabidopsis thaliana 0.34 Auxin-responsive GH3 family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G59535.1 Arabidopsis thaliana 1.00 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G59580.2 Arabidopsis thaliana 0.50 mitogen-activated protein kinase homolog 2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G59590.1 Arabidopsis thaliana 0.46 ZCF37 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G59660.1 Arabidopsis thaliana 0.39 Nucleoporin autopeptidase SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G59670.1 Arabidopsis thaliana 0.43 glutathione S-transferase TAU 15 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G59725.1 Arabidopsis thaliana 0.33 DNAJ heat shock family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT1G59740.1 Arabidopsis thaliana 0.61 Major facilitator superfamily protein SRR1144842:be1-3 7 days on CIM AT1G59830.1 Arabidopsis thaliana 0.40 protein phosphatase 2A-2 SRR1652314:atrtf2-1 AT1G59833.1 Arabidopsis thaliana 0.62 Defensin-like (DEFL) family protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G59860.1 Arabidopsis thaliana 0.31 HSP20-like chaperones superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT1G59865.1 Arabidopsis thaliana 0.60 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G59865.2 Arabidopsis thaliana 0.75 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G59890.3 Arabidopsis thaliana 0.31 SIN3-like 5 SRR949956:early shade responses in Arabidopsis adult plants (Col, 1 hr sun) AT1G59890.4 Arabidopsis thaliana 0.47 SIN3-like 5 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G59930.1 Arabidopsis thaliana 0.32 MADS-box family protein SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G60025.1 Arabidopsis thaliana 0.43 MIR426; miRNA ERR351331:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR493101:Untreated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G60072.1 Arabidopsis thaliana 0.60 MIR859a; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G60073.1 Arabidopsis thaliana 0.87 MIR774a; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G60090.1 Arabidopsis thaliana 0.40 beta glucosidase 4 SRR1652317:atrtf2-2Ho AT1G60130.1 Arabidopsis thaliana 0.60 Mannose-binding lectin superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G60190.1 Arabidopsis thaliana 0.31 ARM repeat superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G60230.1 Arabidopsis thaliana 0.31 Radical SAM superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G60240.1 Arabidopsis thaliana 0.85 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G60400.1 Arabidopsis thaliana 0.51 F-box/RNI-like superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G60410.1 Arabidopsis thaliana 0.32 F-box family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G60450.1 Arabidopsis thaliana 0.31 galactinol synthase 7 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 AT1G60570.1 Arabidopsis thaliana 0.68 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G60620.1 Arabidopsis thaliana 0.31 RNA polymerase I subunit 43 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G60640.1 Arabidopsis thaliana 0.36 Unknown SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G60700.1 Arabidopsis thaliana 0.31 SMAD/FHA domain-containing protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G60730.1 Arabidopsis thaliana 0.32 NAD(P)-linked oxidoreductase superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G60730.3 Arabidopsis thaliana 0.37 NAD(P)-linked oxidoreductase superfamily protein SRR1260035:P-_hps7_R2 AT1G60740.1 Arabidopsis thaliana 0.94 Thioredoxin superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G60750.1 Arabidopsis thaliana 0.51 NAD(P)-linked oxidoreductase superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G60760.1 Arabidopsis thaliana 0.47 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G60835.1 Arabidopsis thaliana 0.66 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G60840.1 Arabidopsis thaliana 0.41 pre-tRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT1G60890.1 Arabidopsis thaliana 0.41 Phosphatidylinositol-4-phosphate 5-kinase family protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G60890.2 Arabidopsis thaliana 0.31 Phosphatidylinositol-4-phosphate 5-kinase family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT1G60940.1 Arabidopsis thaliana 0.67 SNF1-related protein kinase 2.10 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G60970.1 Arabidopsis thaliana 0.40 SNARE-like superfamily protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G60990.2 Arabidopsis thaliana 0.55 Glycine cleavage T-protein family SRR1046858:GSM1287123: Arabidopsis thaliana Hi-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G61060.1 Arabidopsis thaliana 0.59 F-box family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G61080.1 Arabidopsis thaliana 0.56 Hydroxyproline-rich glycoprotein family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G61100.1 Arabidopsis thaliana 0.49 disease resistance protein (TIR class), putative SRR1652314:atrtf2-1 AT1G61120.1 Arabidopsis thaliana 0.37 terpene synthase 04 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G61140.2 Arabidopsis thaliana 0.37 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G61150.1 Arabidopsis thaliana 0.52 LisH and RanBPM domains containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G61150.7 Arabidopsis thaliana 0.65 LisH and RanBPM domains containing protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G61165.1 Arabidopsis thaliana 0.62 Unknown SRR976161:APX20 at 150 mm 1hr AT1G61200.1 Arabidopsis thaliana 0.38 homeobox-leucine zipper protein-related SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR446032:Vir.1h.B AT1G61224.1 Arabidopsis thaliana 0.47 MIR842a; miRNA SRR1019222:GSM1252087: edm2-4 RNA-seq; Arabidopsis thaliana; RNA-Seq SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G61226.1 Arabidopsis thaliana 0.40 MIR846a; miRNA SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT1G61260.1 Arabidopsis thaliana 0.44 Protein of unknown function (DUF761) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G61275.1 Arabidopsis thaliana 0.53 U12; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G61290.1 Arabidopsis thaliana 0.39 syntaxin of plants 124 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G61330.1 Arabidopsis thaliana 0.57 FBD, F-box and Leucine Rich Repeat domains containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G61340.1 Arabidopsis thaliana 0.32 F-box family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G61353.1 Arabidopsis thaliana 0.54 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G61400.1 Arabidopsis thaliana 0.49 S-locus lectin protein kinase family protein SRR1652314:atrtf2-1 AT1G61460.1 Arabidopsis thaliana 0.57 S-locus protein kinase, putative SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G61470.1 Arabidopsis thaliana 0.53 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G61550.1 Arabidopsis thaliana 0.32 S-locus lectin protein kinase family protein SRR364677:GFP sample SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G61563.1 Arabidopsis thaliana 0.91 ralf-like 8 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G61566.1 Arabidopsis thaliana 0.87 ralf-like 9 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G61610.1 Arabidopsis thaliana 0.38 S-locus lectin protein kinase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G61660.1 Arabidopsis thaliana 0.30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT1G61660.4 Arabidopsis thaliana 0.44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G61685.1 Arabidopsis thaliana 0.38 Unknown SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT1G61732.1 Arabidopsis thaliana 0.30 MIR776a; miRNA SRR1207194:GSM1359146: WT 1; Arabidopsis thaliana; RNA-Seq SRR1207199:GSM1359151: 35S:NGA 1; Arabidopsis thaliana; RNA-Seq AT1G61810.2 Arabidopsis thaliana 0.53 beta-glucosidase 45 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 AT1G61820.3 Arabidopsis thaliana 0.63 beta glucosidase 46 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G61860.1 Arabidopsis thaliana 0.93 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G61890.1 Arabidopsis thaliana 0.35 MATE efflux family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G61900.2 Arabidopsis thaliana 0.48 Unknown SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT1G61920.1 Arabidopsis thaliana 0.35 Unknown SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm AT1G61980.1 Arabidopsis thaliana 0.31 Mitochondrial transcription termination factor family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G62035.1 Arabidopsis thaliana 0.68 MIR171C; miRNA SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G62045.1 Arabidopsis thaliana 0.30 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G62070.1 Arabidopsis thaliana 0.33 Unknown SRR1105590:GSM1303963: CL37_7-8_B; Arabidopsis thaliana; RNA-Seq SRR1105599:GSM1303972: PDAT_7-8_B; Arabidopsis thaliana; RNA-Seq AT1G62181.1 Arabidopsis thaliana 0.75 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G62190.1 Arabidopsis thaliana 0.64 Kua-ubiquitin conjugating enzyme hybrid localisation domain ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G62214.1 Arabidopsis thaliana 0.81 Unknown SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT1G62250.2 Arabidopsis thaliana 0.61 Unknown SRR1652314:atrtf2-1 AT1G62262.1 Arabidopsis thaliana 0.46 SLAC1 homologue 4 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G62320.1 Arabidopsis thaliana 0.73 ERD (early-responsive to dehydration stress) family protein SRR364677:GFP sample AT1G62350.1 Arabidopsis thaliana 0.32 Pentatricopeptide repeat (PPR) superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G62355.1 Arabidopsis thaliana 0.54 MIR413; miRNA SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT1G62360.1 Arabidopsis thaliana 0.70 KNOX/ELK homeobox transcription factor SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G62400.1 Arabidopsis thaliana 0.48 Protein kinase superfamily protein SRR826412:Sample Control BR5 AT1G62420.1 Arabidopsis thaliana 0.62 Protein of unknown function (DUF506) SRR1652315:prp8-7 AT1G62430.1 Arabidopsis thaliana 0.48 CDP-diacylglycerol synthase 1 SRR1652314:atrtf2-1 AT1G62480.1 Arabidopsis thaliana 0.43 Vacuolar calcium-binding protein-related SRR520239:GSM958259: WT-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520242:GSM958262: pif3-RNA-3; Arabidopsis thaliana; RNA-Seq AT1G62510.1 Arabidopsis thaliana 0.45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G62520.1 Arabidopsis thaliana 0.34 Unknown SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo AT1G62560.1 Arabidopsis thaliana 0.36 flavin-monooxygenase glucosinolate S-oxygenase 3 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing AT1G62580.1 Arabidopsis thaliana 0.39 Flavin-binding monooxygenase family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G62670.1 Arabidopsis thaliana 0.55 rna processing factor 2 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G62710.1 Arabidopsis thaliana 0.41 beta vacuolar processing enzyme ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G62760.1 Arabidopsis thaliana 0.49 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT1G62790.2 Arabidopsis thaliana 0.47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G62800.2 Arabidopsis thaliana 0.60 aspartate aminotransferase 4 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G62840.1 Arabidopsis thaliana 0.71 Protein of unknown function (DUF1442) SRR944365:GSM1197427: Cold-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT1G62850.3 Arabidopsis thaliana 0.33 Class I peptide chain release factor SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G62863.1 Arabidopsis thaliana 0.95 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G62978.1 Arabidopsis thaliana 0.35 Unknown SRR1046926:GSM1287184: Oy-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G63005.1 Arabidopsis thaliana 0.47 MIR399B; miRNA SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G63010.1 Arabidopsis thaliana 0.59 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G63020.1 Arabidopsis thaliana 0.35 nuclear RNA polymerase D1A SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G63055.1 Arabidopsis thaliana 0.41 Unknown SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT1G63057.1 Arabidopsis thaliana 0.52 Unknown SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT1G63057.2 Arabidopsis thaliana 0.47 Unknown SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G63060.1 Arabidopsis thaliana 0.33 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G63140.2 Arabidopsis thaliana 0.43 O-methyltransferase family protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT1G63190.1 Arabidopsis thaliana 0.32 Cystatin/monellin superfamily protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G63206.1 Arabidopsis thaliana 0.54 Cystatin/monellin superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G63245.1 Arabidopsis thaliana 0.73 CLAVATA3/ESR-RELATED 14 SRR364677:GFP sample AT1G63270.1 Arabidopsis thaliana 0.33 non-intrinsic ABC protein 10 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G63295.1 Arabidopsis thaliana 0.44 Remorin family protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT1G63510.1 Arabidopsis thaliana 0.36 pre-tRNA SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G63530.1 Arabidopsis thaliana 0.41 Unknown SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G63535.1 Arabidopsis thaliana 0.31 Defensin-like (DEFL) family protein SRR068973:GSM607728: Col-WTxLer-WT_full-Endosperm AT1G63540.1 Arabidopsis thaliana 0.34 hydroxyproline-rich glycoprotein family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G63550.1 Arabidopsis thaliana 0.50 Receptor-like protein kinase-related family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G63570.1 Arabidopsis thaliana 0.46 Receptor-like protein kinase-related family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G63600.1 Arabidopsis thaliana 0.31 Receptor-like protein kinase-related family protein SRR1260038:P-_WT_R1 AT1G63640.1 Arabidopsis thaliana 0.59 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G63640.2 Arabidopsis thaliana 0.38 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain SRR1046871:GSM1287136: Arabidopsis thaliana Oy-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046874:GSM1287139: Arabidopsis thaliana Po-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G63700.1 Arabidopsis thaliana 0.38 Protein kinase superfamily protein SRR1652314:atrtf2-1 AT1G63740.1 Arabidopsis thaliana 0.35 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G63750.1 Arabidopsis thaliana 0.38 Disease resistance protein (TIR-NBS-LRR class) family SRR1652314:atrtf2-1 AT1G63750.3 Arabidopsis thaliana 0.69 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G63770.4 Arabidopsis thaliana 0.42 Peptidase M1 family protein SRR1652314:atrtf2-1 AT1G63790.1 Arabidopsis thaliana 0.53 pre-tRNA SRR499985:col-0 replicate 2 AT1G63820.1 Arabidopsis thaliana 0.35 CCT motif family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G63830.2 Arabidopsis thaliana 0.64 PLAC8 family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G63860.2 Arabidopsis thaliana 0.53 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G63910.1 Arabidopsis thaliana 0.55 myb domain protein 103 SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G63930.1 Arabidopsis thaliana 0.57 from the Czech 'roh' meaning 'corner' SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G64000.1 Arabidopsis thaliana 0.33 WRKY DNA-binding protein 56 ERR588049:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588044:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588046:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G64020.1 Arabidopsis thaliana 0.34 Serine protease inhibitor (SERPIN) family protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G64030.1 Arabidopsis thaliana 0.49 serpin 3 SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G64035.1 Arabidopsis thaliana 0.78 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G64040.1 Arabidopsis thaliana 0.38 type one serine/threonine protein phosphatase 3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364678:nonGFP sample AT1G64110.1 Arabidopsis thaliana 0.65 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT1G64110.2 Arabidopsis thaliana 0.51 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT1G64150.1 Arabidopsis thaliana 0.42 Uncharacterized protein family (UPF0016) ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G64160.1 Arabidopsis thaliana 0.31 Disease resistance-responsive (dirigent-like protein) family protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G64195.1 Arabidopsis thaliana 0.64 Defensin-like (DEFL) family protein SRR364677:GFP sample AT1G64230.4 Arabidopsis thaliana 0.56 ubiquitin-conjugating enzyme 28 SRR1652314:atrtf2-1 AT1G64235.1 Arabidopsis thaliana 0.57 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1046868:GSM1287133: Arabidopsis thaliana No-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G64290.1 Arabidopsis thaliana 0.32 F-box protein-related SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G64300.1 Arabidopsis thaliana 0.68 Protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G64300.2 Arabidopsis thaliana 0.54 Protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G64360.1 Arabidopsis thaliana 0.43 Unknown SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G64430.2 Arabidopsis thaliana 0.46 Pentatricopeptide repeat (PPR) superfamily protein SRR1652314:atrtf2-1 AT1G64440.1 Arabidopsis thaliana 0.54 NAD(P)-binding Rossmann-fold superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G64460.1 Arabidopsis thaliana 0.42 Protein kinase superfamily protein SRR364677:GFP sample AT1G64470.1 Arabidopsis thaliana 0.32 Ubiquitin-like superfamily protein SRR364677:GFP sample AT1G64530.1 Arabidopsis thaliana 0.33 Plant regulator RWP-RK family protein SRR364677:GFP sample AT1G64561.1 Arabidopsis thaliana 0.40 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G64600.1 Arabidopsis thaliana 0.33 methyltransferases;copper ion binding SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G64625.2 Arabidopsis thaliana 0.46 Serine/threonine-protein kinase WNK (With No Lysine)-related SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT1G64625.3 Arabidopsis thaliana 0.32 Serine/threonine-protein kinase WNK (With No Lysine)-related SRR1144842:be1-3 7 days on CIM AT1G64630.1 Arabidopsis thaliana 0.74 with no lysine (K) kinase 10 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G64650.1 Arabidopsis thaliana 0.42 Major facilitator superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G64650.2 Arabidopsis thaliana 0.37 Major facilitator superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G64660.1 Arabidopsis thaliana 0.38 methionine gamma-lyase SRR1039918:GSM1276505: ColxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G64740.1 Arabidopsis thaliana 0.93 alpha-1 tubulin SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G64750.2 Arabidopsis thaliana 0.41 deletion of SUV3 suppressor 1(I) SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G64750.3 Arabidopsis thaliana 0.47 deletion of SUV3 suppressor 1(I) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G64910.1 Arabidopsis thaliana 0.55 UDP-Glycosyltransferase superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G64920.1 Arabidopsis thaliana 0.65 UDP-Glycosyltransferase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G64930.1 Arabidopsis thaliana 0.56 cytochrome P450, family 87, subfamily A, polypeptide 7 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G64970.1 Arabidopsis thaliana 0.30 gamma-tocopherol methyltransferase SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G65020.1 Arabidopsis thaliana 0.39 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G65080.1 Arabidopsis thaliana 0.57 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G65270.3 Arabidopsis thaliana 0.31 Unknown SRR1046872:GSM1287137: Arabidopsis thaliana Oy-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G65300.1 Arabidopsis thaliana 0.52 AGAMOUS-like 38 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G65310.1 Arabidopsis thaliana 0.47 xyloglucan endotransglucosylase/hydrolase 17 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G65330.1 Arabidopsis thaliana 0.44 MADS-box transcription factor family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G65340.1 Arabidopsis thaliana 0.43 cytochrome P450, family 96, subfamily A, polypeptide 3 SRR1652316:atrtf2-2He SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G65350.1 Arabidopsis thaliana 0.56 ubiquitin 13 SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G65360.1 Arabidopsis thaliana 0.54 AGAMOUS-like 23 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G65380.1 Arabidopsis thaliana 0.60 Leucine-rich repeat (LRR) family protein SRR1508463:GSM1429684: clavata2-gabi replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508464:GSM1429685: clavata2-gabi replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508465:GSM1429686: clavata2-gabi replicate 3; Arabidopsis thaliana; RNA-Seq AT1G65385.1 Arabidopsis thaliana 0.53 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G65390.2 Arabidopsis thaliana 0.38 phloem protein 2 A5 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G65440.3 Arabidopsis thaliana 0.67 global transcription factor group B1 SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA AT1G65450.2 Arabidopsis thaliana 0.37 HXXXD-type acyl-transferase family protein SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT1G65450.3 Arabidopsis thaliana 0.31 HXXXD-type acyl-transferase family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G65481.1 Arabidopsis thaliana 0.31 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G65485.1 Arabidopsis thaliana 0.45 transposable element gene SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT1G65486.2 Arabidopsis thaliana 0.83 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G65570.1 Arabidopsis thaliana 0.53 Pectin lyase-like superfamily protein SRR1260037:P+_hps7_R2 SRR1260035:P-_hps7_R2 AT1G65580.1 Arabidopsis thaliana 0.54 Endonuclease/exonuclease/phosphatase family protein SRR1652314:atrtf2-1 AT1G65610.1 Arabidopsis thaliana 0.56 Six-hairpin glycosidases superfamily protein SRR364677:GFP sample AT1G65640.1 Arabidopsis thaliana 0.30 DegP protease 4 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G65650.1 Arabidopsis thaliana 0.35 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G65670.1 Arabidopsis thaliana 0.35 cytochrome P450, family 702, subfamily A, polypeptide 1 ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G65680.1 Arabidopsis thaliana 0.32 expansin B2 SRR420815:control sample #3 AT1G65760.1 Arabidopsis thaliana 0.83 Protein of unknown function (DUF295) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G65820.2 Arabidopsis thaliana 0.79 microsomal glutathione s-transferase, putative SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G65860.1 Arabidopsis thaliana 0.35 flavin-monooxygenase glucosinolate S-oxygenase 1 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT1G65875.1 Arabidopsis thaliana 0.38 Unknown SRR1046877:GSM1287142: Arabidopsis thaliana Rsch-4 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT1G65907.1 Arabidopsis thaliana 0.75 Unknown SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G65910.1 Arabidopsis thaliana 0.36 NAC domain containing protein 28 SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G65970.1 Arabidopsis thaliana 0.30 thioredoxin-dependent peroxidase 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G65985.1 Arabidopsis thaliana 0.67 Plant protein of unknown function (DUF247) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G65990.1 Arabidopsis thaliana 0.53 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G66000.1 Arabidopsis thaliana 0.59 Family of unknown function (DUF577) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G66010.1 Arabidopsis thaliana 0.55 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G66080.1 Arabidopsis thaliana 0.48 Unknown SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT1G66110.1 Arabidopsis thaliana 0.62 Family of unknown function (DUF577) SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G66120.1 Arabidopsis thaliana 0.74 AMP-dependent synthetase and ligase family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G66140.1 Arabidopsis thaliana 0.47 zinc finger protein 4 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G66160.1 Arabidopsis thaliana 0.43 CYS, MET, PRO, and GLY protein 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G66160.2 Arabidopsis thaliana 0.33 CYS, MET, PRO, and GLY protein 1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G66173.1 Arabidopsis thaliana 0.33 other RNA SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G66210.1 Arabidopsis thaliana 0.95 Subtilisin-like serine endopeptidase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G66235.1 Arabidopsis thaliana 0.68 Unknown SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G66270.1 Arabidopsis thaliana 0.65 Glycosyl hydrolase superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G66280.1 Arabidopsis thaliana 0.36 Glycosyl hydrolase superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G66380.1 Arabidopsis thaliana 0.35 myb domain protein 114 SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G66400.1 Arabidopsis thaliana 0.30 calmodulin like 23 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G66450.1 Arabidopsis thaliana 0.46 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G66470.1 Arabidopsis thaliana 0.71 ROOT HAIR DEFECTIVE6 SRR364677:GFP sample AT1G66475.1 Arabidopsis thaliana 0.82 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G66500.1 Arabidopsis thaliana 0.32 Pre-mRNA cleavage complex II ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G66510.3 Arabidopsis thaliana 0.52 AAR2 protein family SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G66553.1 Arabidopsis thaliana 0.60 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G66570.3 Arabidopsis thaliana 0.61 sucrose-proton symporter 7 SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G66580.1 Arabidopsis thaliana 0.78 senescence associated gene 24 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G66590.1 Arabidopsis thaliana 0.30 cytochrome c oxidase 19-1 SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G66700.3 Arabidopsis thaliana 0.47 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G66783.1 Arabidopsis thaliana 0.60 MIR157A; miRNA SRR1105826:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 AT1G66790.1 Arabidopsis thaliana 0.82 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G66795.1 Arabidopsis thaliana 0.40 MIR157B; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR1144844:WS 2 days on SIM AT1G66830.1 Arabidopsis thaliana 0.38 Leucine-rich repeat protein kinase family protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G66855.1 Arabidopsis thaliana 0.60 Carbohydrate-binding X8 domain superfamily protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT1G66940.2 Arabidopsis thaliana 0.30 protein kinase-related SRR609267:GSM1025547: Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G66960.1 Arabidopsis thaliana 0.48 Terpenoid cyclases family protein SRR513741:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 1 SRR513742:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 1 SRR513743:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513744:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G66990.1 Arabidopsis thaliana 0.43 Unknown SRR514998:GSM736442: At_mRNASeq SRR514999:GSM736442: At_mRNASeq AT1G67070.1 Arabidopsis thaliana 0.55 Mannose-6-phosphate isomerase, type I SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G67150.1 Arabidopsis thaliana 0.42 Plant protein of unknown function (DUF247) SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G67150.2 Arabidopsis thaliana 0.38 Plant protein of unknown function (DUF247) SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G67150.3 Arabidopsis thaliana 0.54 Plant protein of unknown function (DUF247) SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G67210.1 Arabidopsis thaliana 0.30 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR1144843:WS 7 days on CIM AT1G67290.1 Arabidopsis thaliana 0.84 glyoxal oxidase-related protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G67360.2 Arabidopsis thaliana 0.60 Rubber elongation factor protein (REF) SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G67365.1 Arabidopsis thaliana 0.54 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G67480.1 Arabidopsis thaliana 0.43 Galactose oxidase/kelch repeat superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G67480.2 Arabidopsis thaliana 0.35 Galactose oxidase/kelch repeat superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G67490.2 Arabidopsis thaliana 0.43 glucosidase 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G67510.1 Arabidopsis thaliana 0.43 Leucine-rich repeat protein kinase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G67590.1 Arabidopsis thaliana 0.45 Remorin family protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo AT1G67590.2 Arabidopsis thaliana 0.39 Remorin family protein SRR627650:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq AT1G67620.1 Arabidopsis thaliana 0.32 Lojap-related protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G67623.1 Arabidopsis thaliana 0.69 F-box family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G67626.1 Arabidopsis thaliana 0.63 transposable element gene SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G67640.1 Arabidopsis thaliana 0.62 Transmembrane amino acid transporter family protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G67645.1 Arabidopsis thaliana 0.55 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G67660.2 Arabidopsis thaliana 0.40 Restriction endonuclease, type II-like superfamily protein SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient SRR949991:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) AT1G67690.1 Arabidopsis thaliana 0.36 Zincin-like metalloproteases family protein SRR1652314:atrtf2-1 AT1G67710.1 Arabidopsis thaliana 0.30 response regulator 11 SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G67720.1 Arabidopsis thaliana 0.35 Leucine-rich repeat protein kinase family protein SRR1652314:atrtf2-1 AT1G67780.1 Arabidopsis thaliana 0.34 Zinc-finger domain of monoamine-oxidase A repressor R1 protein SRR1144843:WS 7 days on CIM AT1G67800.4 Arabidopsis thaliana 0.52 Copine (Calcium-dependent phospholipid-binding protein) family SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G67840.1 Arabidopsis thaliana 0.39 chloroplast sensor kinase SRR1652314:atrtf2-1 AT1G67856.1 Arabidopsis thaliana 0.49 RING/U-box superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G67860.1 Arabidopsis thaliana 0.44 Unknown SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518041:GSM954618: H2AZ_HO_3_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G67865.1 Arabidopsis thaliana 0.54 Unknown SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G67900.3 Arabidopsis thaliana 0.80 Phototropic-responsive NPH3 family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G67920.1 Arabidopsis thaliana 0.32 Unknown SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G67950.1 Arabidopsis thaliana 0.54 RNA-binding (RRM/RBD/RNP motifs) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G67960.1 Arabidopsis thaliana 0.37 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G67980.2 Arabidopsis thaliana 0.34 caffeoyl-CoA 3-O-methyltransferase SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G68010.2 Arabidopsis thaliana 0.34 hydroxypyruvate reductase SRR1046882:GSM1287147: Arabidopsis thaliana Sf-2 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G68070.1 Arabidopsis thaliana 0.43 Zinc finger, C3HC4 type (RING finger) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G68110.1 Arabidopsis thaliana 0.93 ENTH/ANTH/VHS superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G68140.1 Arabidopsis thaliana 0.41 Protein of unknown function (DUF1644) SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G68140.3 Arabidopsis thaliana 0.45 Protein of unknown function (DUF1644) SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G68150.1 Arabidopsis thaliana 0.54 WRKY DNA-binding protein 9 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G68238.1 Arabidopsis thaliana 0.31 Unknown SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT1G68240.2 Arabidopsis thaliana 0.49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1652317:atrtf2-2Ho SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G68250.2 Arabidopsis thaliana 0.35 Unknown SRR627655:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627656:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT1G68280.1 Arabidopsis thaliana 0.41 Thioesterase superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G68290.1 Arabidopsis thaliana 0.47 endonuclease 2 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G68300.1 Arabidopsis thaliana 0.32 Adenine nucleotide alpha hydrolases-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G68320.1 Arabidopsis thaliana 0.90 myb domain protein 62 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G68360.1 Arabidopsis thaliana 0.39 C2H2 and C2HC zinc fingers superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G68410.2 Arabidopsis thaliana 0.49 Protein phosphatase 2C family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G68420.1 Arabidopsis thaliana 0.88 Class II aaRS and biotin synthetases superfamily protein SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G68540.1 Arabidopsis thaliana 0.41 NAD(P)-binding Rossmann-fold superfamily protein SRR1061358:GSM1298726: FB1_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT1G68590.2 Arabidopsis thaliana 0.57 Ribosomal protein PSRP-3/Ycf65 SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G68610.1 Arabidopsis thaliana 0.89 PLANT CADMIUM RESISTANCE 11 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G68630.1 Arabidopsis thaliana 0.50 PLAC8 family protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G68670.1 Arabidopsis thaliana 0.51 myb-like transcription factor family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G68690.1 Arabidopsis thaliana 0.66 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G68740.1 Arabidopsis thaliana 0.32 EXS (ERD1/XPR1/SYG1) family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G68765.1 Arabidopsis thaliana 0.51 Putative membrane lipoprotein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G68825.1 Arabidopsis thaliana 0.56 ROTUNDIFOLIA like 15 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G68825.2 Arabidopsis thaliana 0.50 ROTUNDIFOLIA like 15 SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT1G68840.2 Arabidopsis thaliana 0.32 related to ABI3/VP1 2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G68850.1 Arabidopsis thaliana 0.34 Peroxidase superfamily protein ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588044:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G68905.1 Arabidopsis thaliana 0.42 Defensin-like (DEFL) family protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT1G68907.1 Arabidopsis thaliana 0.73 Defensin-like (DEFL) family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G68950.1 Arabidopsis thaliana 0.46 pre-tRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR671949:GSM1077435: Root_polyA_KNO3_Treatment_rep2; Arabidopsis thaliana; RNA-Seq AT1G68990.1 Arabidopsis thaliana 0.37 male gametophyte defective 3 SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT1G69010.1 Arabidopsis thaliana 0.32 BES1-interacting Myc-like protein 2 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G69020.1 Arabidopsis thaliana 0.43 Prolyl oligopeptidase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G69040.1 Arabidopsis thaliana 0.31 ACT domain repeat 4 SRR907287:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G69050.1 Arabidopsis thaliana 0.54 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G69080.1 Arabidopsis thaliana 0.35 Adenine nucleotide alpha hydrolases-like superfamily protein SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT1G69080.2 Arabidopsis thaliana 0.30 Adenine nucleotide alpha hydrolases-like superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G69110.1 Arabidopsis thaliana 0.90 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G69120.1 Arabidopsis thaliana 0.46 K-box region and MADS-box transcription factor family protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G69140.1 Arabidopsis thaliana 0.40 Unknown SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT1G69170.1 Arabidopsis thaliana 0.34 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G69180.1 Arabidopsis thaliana 0.75 Plant-specific transcription factor YABBY family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G69220.1 Arabidopsis thaliana 0.35 Protein kinase superfamily protein SRR1652314:atrtf2-1 AT1G69240.1 Arabidopsis thaliana 0.58 methyl esterase 15 SRR364677:GFP sample AT1G69250.1 Arabidopsis thaliana 0.46 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G69310.1 Arabidopsis thaliana 0.31 WRKY DNA-binding protein 57 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G69330.1 Arabidopsis thaliana 0.36 RING/U-box superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G69420.1 Arabidopsis thaliana 0.35 DHHC-type zinc finger family protein SRR1061358:GSM1298726: FB1_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT1G69460.1 Arabidopsis thaliana 0.34 emp24/gp25L/p24 family/GOLD family protein SRR520237:GSM958257: WT-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520238:GSM958258: WT-RNA-2; Arabidopsis thaliana; RNA-Seq SRR520239:GSM958259: WT-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520240:GSM958260: pif3-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520241:GSM958261: pif3-RNA-2; Arabidopsis thaliana; RNA-Seq SRR520242:GSM958262: pif3-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520243:GSM958263: pif145-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520244:GSM958264: pif145-RNA-2; Arabidopsis thaliana; RNA-Seq SRR520245:GSM958265: pif145-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520246:GSM958266: pifq-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520247:GSM958267: pifq-RNA-2; Arabidopsis thaliana; RNA-Seq SRR520248:GSM958268: pifq-RNA-3; Arabidopsis thaliana; RNA-Seq AT1G69470.1 Arabidopsis thaliana 0.80 Unknown SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G69480.1 Arabidopsis thaliana 0.40 EXS (ERD1/XPR1/SYG1) family protein SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G69485.1 Arabidopsis thaliana 0.49 Ribosomal L32p protein family SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G69490.1 Arabidopsis thaliana 0.36 NAC-like, activated by AP3/PI SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G69510.2 Arabidopsis thaliana 0.58 cAMP-regulated phosphoprotein 19-related protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G69530.1 Arabidopsis thaliana 0.42 expansin A1 SRR907287:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G69530.3 Arabidopsis thaliana 0.39 expansin A1 SRR515326:GSM951353: RVE8:GR_mock_2; Arabidopsis thaliana; RNA-Seq AT1G69530.4 Arabidopsis thaliana 0.40 expansin A1 SRR609270:GSM1025550: mos2-2 rep2; Arabidopsis thaliana; RNA-Seq AT1G69540.1 Arabidopsis thaliana 0.36 AGAMOUS-like 94 SRR1046892:GSM1287157: Arabidopsis thaliana Wu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046894:GSM1287159: Arabidopsis thaliana Wu-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G69550.1 Arabidopsis thaliana 0.36 disease resistance protein (TIR-NBS-LRR class) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G69572.1 Arabidopsis thaliana 0.31 other RNA SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq AT1G69630.1 Arabidopsis thaliana 0.32 F-box/RNI-like superfamily protein SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G69680.1 Arabidopsis thaliana 0.45 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G69750.1 Arabidopsis thaliana 0.78 cytochrome c oxidase 19-2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G69760.1 Arabidopsis thaliana 0.37 Unknown SRR364678:nonGFP sample AT1G69792.1 Arabidopsis thaliana 0.82 MIR395D; miRNA ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G69795.1 Arabidopsis thaliana 0.36 MIR395E; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G69797.1 Arabidopsis thaliana 0.48 MIR395F; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G69820.1 Arabidopsis thaliana 0.61 gamma-glutamyl transpeptidase 3 SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT1G69840.2 Arabidopsis thaliana 0.43 SPFH/Band 7/PHB domain-containing membrane-associated protein family SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G69840.3 Arabidopsis thaliana 0.35 SPFH/Band 7/PHB domain-containing membrane-associated protein family SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G69840.4 Arabidopsis thaliana 0.67 SPFH/Band 7/PHB domain-containing membrane-associated protein family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G69840.6 Arabidopsis thaliana 0.51 SPFH/Band 7/PHB domain-containing membrane-associated protein family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G69880.1 Arabidopsis thaliana 0.48 thioredoxin H-type 8 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G69930.1 Arabidopsis thaliana 0.34 glutathione S-transferase TAU 11 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G69940.1 Arabidopsis thaliana 0.56 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G69970.2 Arabidopsis thaliana 0.37 CLAVATA3/ESR-RELATED 26 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G69981.1 Arabidopsis thaliana 0.31 Unknown SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G70000.2 Arabidopsis thaliana 0.33 myb-like transcription factor family protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G70050.1 Arabidopsis thaliana 0.60 pre-tRNA SRR671946:GSM1077432: Root_polyA_KCl_Control_rep1; Arabidopsis thaliana; RNA-Seq SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT1G70060.1 Arabidopsis thaliana 0.31 SIN3-like 4 SRR1652314:atrtf2-1 AT1G70100.2 Arabidopsis thaliana 0.59 Unknown SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G70130.1 Arabidopsis thaliana 0.36 Concanavalin A-like lectin protein kinase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G70150.1 Arabidopsis thaliana 0.36 zinc ion binding ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G70185.1 Arabidopsis thaliana 0.36 other RNA SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G70220.1 Arabidopsis thaliana 0.35 RNA-processing, Lsm domain SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G70270.1 Arabidopsis thaliana 0.50 Unknown SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G70330.1 Arabidopsis thaliana 0.37 equilibrative nucleotide transporter 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G70380.1 Arabidopsis thaliana 0.40 F-box and associated interaction domains-containing protein SRR1058118:GSM1297920: at-seed-ler_wt_x_col_met 3; Arabidopsis thaliana; RNA-Seq AT1G70400.1 Arabidopsis thaliana 0.74 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G70410.1 Arabidopsis thaliana 0.34 beta carbonic anhydrase 4 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G70440.1 Arabidopsis thaliana 0.65 similar to RCD one 3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G70450.1 Arabidopsis thaliana 0.75 Protein kinase superfamily protein SRR364677:GFP sample AT1G70460.1 Arabidopsis thaliana 0.72 root hair specific 10 SRR364677:GFP sample AT1G70540.1 Arabidopsis thaliana 0.82 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G70560.1 Arabidopsis thaliana 0.45 tryptophan aminotransferase of Arabidopsis 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G70580.2 Arabidopsis thaliana 0.40 alanine-2-oxoglutarate aminotransferase 2 SRR1019222:GSM1252087: edm2-4 RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G70580.3 Arabidopsis thaliana 0.37 alanine-2-oxoglutarate aminotransferase 2 SRR068980:GSM607731: Ler-WTxCol-WT_Embryo AT1G70581.1 Arabidopsis thaliana 0.31 other RNA SRR1257397:GSM1371359: mock T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G70700.2 Arabidopsis thaliana 0.72 TIFY domain/Divergent CCT motif family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G70740.1 Arabidopsis thaliana 0.37 Protein kinase superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G70790.1 Arabidopsis thaliana 0.83 Calcium-dependent lipid-binding (CaLB domain) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G70830.4 Arabidopsis thaliana 0.44 MLP-like protein 28 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G70850.1 Arabidopsis thaliana 0.81 MLP-like protein 34 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G70850.2 Arabidopsis thaliana 0.37 MLP-like protein 34 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G70860.1 Arabidopsis thaliana 0.44 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G70880.1 Arabidopsis thaliana 0.51 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G70895.1 Arabidopsis thaliana 0.38 CLAVATA3/ESR-RELATED 17 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G70910.1 Arabidopsis thaliana 0.71 RING/U-box superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G70944.1 Arabidopsis thaliana 0.71 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G70950.1 Arabidopsis thaliana 0.31 TPX2 (targeting protein for Xklp2) protein family ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G70980.1 Arabidopsis thaliana 0.35 Class II aminoacyl-tRNA and biotin synthetases superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G71020.1 Arabidopsis thaliana 0.45 ARM repeat superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G71200.1 Arabidopsis thaliana 0.32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G71210.1 Arabidopsis thaliana 0.33 Pentatricopeptide repeat (PPR) superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G71280.1 Arabidopsis thaliana 0.61 DEA(D/H)-box RNA helicase family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G71310.2 Arabidopsis thaliana 0.51 cobalt ion binding SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G71350.1 Arabidopsis thaliana 0.42 eukaryotic translation initiation factor SUI1 family protein SRR1652314:atrtf2-1 AT1G71360.1 Arabidopsis thaliana 0.39 Galactose-binding protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G71380.1 Arabidopsis thaliana 0.36 cellulase 3 SRR1144842:be1-3 7 days on CIM AT1G71450.1 Arabidopsis thaliana 0.45 Integrase-type DNA-binding superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G71490.1 Arabidopsis thaliana 0.50 Tetratricopeptide repeat (TPR)-like superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G71520.1 Arabidopsis thaliana 0.70 Integrase-type DNA-binding superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G71530.1 Arabidopsis thaliana 0.77 Protein kinase superfamily protein SRR364677:GFP sample AT1G71696.1 Arabidopsis thaliana 0.33 carboxypeptidase D, putative SRR1652315:prp8-7 AT1G71696.2 Arabidopsis thaliana 0.33 carboxypeptidase D, putative ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G71710.1 Arabidopsis thaliana 0.31 DNAse I-like superfamily protein SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT1G71710.2 Arabidopsis thaliana 0.36 DNAse I-like superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G71800.1 Arabidopsis thaliana 0.44 cleavage stimulating factor 64 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G71820.2 Arabidopsis thaliana 0.36 SEC6 SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT1G71828.1 Arabidopsis thaliana 0.45 Unknown SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G71830.1 Arabidopsis thaliana 0.64 somatic embryogenesis receptor-like kinase 1 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT1G71940.2 Arabidopsis thaliana 0.37 SNARE associated Golgi protein family SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G72000.1 Arabidopsis thaliana 0.43 Plant neutral invertase family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G72050.1 Arabidopsis thaliana 0.36 transcription factor IIIA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G72125.1 Arabidopsis thaliana 0.33 Major facilitator superfamily protein SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G72140.1 Arabidopsis thaliana 0.55 Major facilitator superfamily protein SRR364678:nonGFP sample AT1G72141.1 Arabidopsis thaliana 0.42 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G72300.1 Arabidopsis thaliana 0.33 Leucine-rich receptor-like protein kinase family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G72330.1 Arabidopsis thaliana 0.81 alanine aminotransferase 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G72330.2 Arabidopsis thaliana 0.31 alanine aminotransferase 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G72350.1 Arabidopsis thaliana 0.42 MADS-box transcription factor family protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G72416.1 Arabidopsis thaliana 0.39 Chaperone DnaJ-domain superfamily protein SRR826283:Analysis of Gene Expression in Arabidopsis thaliana Guard Cells AT1G72416.3 Arabidopsis thaliana 0.86 Chaperone DnaJ-domain superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G72416.5 Arabidopsis thaliana 0.44 Chaperone DnaJ-domain superfamily protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G72440.1 Arabidopsis thaliana 0.39 CCAAT-binding factor SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT1G72460.1 Arabidopsis thaliana 0.32 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G72490.1 Arabidopsis thaliana 0.64 Unknown SRR1144843:WS 7 days on CIM AT1G72500.1 Arabidopsis thaliana 0.42 Unknown SRR364677:GFP sample SRR364678:nonGFP sample AT1G72520.1 Arabidopsis thaliana 0.40 PLAT/LH2 domain-containing lipoxygenase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G72645.1 Arabidopsis thaliana 0.30 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1192255:GSM1347943: pad4 rep1; Arabidopsis thaliana; RNA-Seq AT1G72660.1 Arabidopsis thaliana 0.69 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G72790.1 Arabidopsis thaliana 0.59 hydroxyproline-rich glycoprotein family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G72830.1 Arabidopsis thaliana 0.39 nuclear factor Y, subunit A3 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G72890.1 Arabidopsis thaliana 0.30 Disease resistance protein (TIR-NBS class) SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G72920.1 Arabidopsis thaliana 0.74 Toll-Interleukin-Resistance (TIR) domain family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G72940.1 Arabidopsis thaliana 0.38 Toll-Interleukin-Resistance (TIR) domain-containing protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G72950.1 Arabidopsis thaliana 0.40 Disease resistance protein (TIR-NBS class) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G73066.1 Arabidopsis thaliana 0.71 Leucine-rich repeat family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G73080.1 Arabidopsis thaliana 0.38 PEP1 receptor 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G73160.1 Arabidopsis thaliana 0.48 UDP-Glycosyltransferase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G73165.1 Arabidopsis thaliana 0.56 CLAVATA3/ESR-RELATED 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G73170.2 Arabidopsis thaliana 0.35 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1652314:atrtf2-1 AT1G73280.1 Arabidopsis thaliana 0.43 serine carboxypeptidase-like 3 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G73340.1 Arabidopsis thaliana 0.49 Cytochrome P450 superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample AT1G73350.3 Arabidopsis thaliana 0.42 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G73370.1 Arabidopsis thaliana 0.61 sucrose synthase 6 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G73390.1 Arabidopsis thaliana 0.45 Endosomal targeting BRO1-like domain-containing protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq AT1G73440.1 Arabidopsis thaliana 0.43 calmodulin-related SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G73470.1 Arabidopsis thaliana 0.38 Unknown SRR1652314:atrtf2-1 SRR988550:GSM1232786: hta6_7_12_mRNA; Arabidopsis thaliana; RNA-Seq AT1G73480.1 Arabidopsis thaliana 0.32 alpha/beta-Hydrolases superfamily protein SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G73500.1 Arabidopsis thaliana 0.31 MAP kinase kinase 9 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G73540.1 Arabidopsis thaliana 0.33 nudix hydrolase homolog 21 SRR978415:18O at 100mm 24h AT1G73550.2 Arabidopsis thaliana 0.31 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G73560.1 Arabidopsis thaliana 0.52 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G73580.1 Arabidopsis thaliana 0.30 Calcium-dependent lipid-binding (CaLB domain) family protein SRR364677:GFP sample AT1G73610.1 Arabidopsis thaliana 0.30 GDSL-like Lipase/Acylhydrolase superfamily protein SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G73680.1 Arabidopsis thaliana 0.50 alpha dioxygenase SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT1G73687.1 Arabidopsis thaliana 0.76 MIR159/MIR159A; miRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT1G73770.1 Arabidopsis thaliana 0.31 Unknown SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT1G73805.1 Arabidopsis thaliana 0.47 Calmodulin binding protein-like SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G73830.1 Arabidopsis thaliana 0.51 BR enhanced expression 3 SRR1652314:atrtf2-1 AT1G73830.2 Arabidopsis thaliana 0.31 BR enhanced expression 3 SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT1G73850.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF1666) SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G73860.1 Arabidopsis thaliana 0.41 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR364677:GFP sample SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G73880.1 Arabidopsis thaliana 0.50 UDP-glucosyl transferase 89B1 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G73950.1 Arabidopsis thaliana 0.38 Transmembrane Fragile-X-F-associated protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G74000.1 Arabidopsis thaliana 0.45 strictosidine synthase 3 SRR364677:GFP sample SRR364678:nonGFP sample SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G74010.1 Arabidopsis thaliana 0.78 Calcium-dependent phosphotriesterase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G74020.1 Arabidopsis thaliana 0.68 strictosidine synthase 2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G74088.1 Arabidopsis thaliana 0.46 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G74088.2 Arabidopsis thaliana 0.41 Unknown SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G74090.1 Arabidopsis thaliana 0.33 desulfo-glucosinolate sulfotransferase 18 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT1G74120.1 Arabidopsis thaliana 0.37 Mitochondrial transcription termination factor family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G74150.1 Arabidopsis thaliana 0.38 Galactose oxidase/kelch repeat superfamily protein SRR402996:GSM867676: Col_PAC_PPZ; Arabidopsis thaliana; RNA-Seq SRR515491:GSM951966: Col_PAC_PPZ repeat; Arabidopsis thaliana; RNA-Seq AT1G74170.1 Arabidopsis thaliana 0.36 receptor like protein 13 SRR988550:GSM1232786: hta6_7_12_mRNA; Arabidopsis thaliana; RNA-Seq AT1G74205.1 Arabidopsis thaliana 0.55 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G74220.1 Arabidopsis thaliana 0.65 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G74230.1 Arabidopsis thaliana 0.53 glycine-rich RNA-binding protein 5 SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT1G74250.1 Arabidopsis thaliana 0.39 DNAJ heat shock N-terminal domain-containing protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G74300.1 Arabidopsis thaliana 0.42 alpha/beta-Hydrolases superfamily protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT1G74310.1 Arabidopsis thaliana 0.34 heat shock protein 101 SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT1G74330.1 Arabidopsis thaliana 0.65 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G74360.1 Arabidopsis thaliana 0.31 Leucine-rich repeat protein kinase family protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G74370.1 Arabidopsis thaliana 0.70 RING/U-box superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G74420.1 Arabidopsis thaliana 0.41 fucosyltransferase 3 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G74420.2 Arabidopsis thaliana 0.34 fucosyltransferase 3 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G74440.1 Arabidopsis thaliana 0.68 Protein of unknown function (DUF962) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G74448.1 Arabidopsis thaliana 0.31 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT1G74453.1 Arabidopsis thaliana 0.31 snoRNA SRR1652313:control SRR1652314:atrtf2-1 SRR1652315:prp8-7 AT1G74490.1 Arabidopsis thaliana 0.36 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G74580.1 Arabidopsis thaliana 0.35 Pentatricopeptide repeat (PPR) superfamily protein SRR1652314:atrtf2-1 AT1G74670.1 Arabidopsis thaliana 0.48 Gibberellin-regulated family protein SRR1652314:atrtf2-1 AT1G74700.1 Arabidopsis thaliana 0.33 tRNAse Z1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G74750.1 Arabidopsis thaliana 0.35 Pentatricopeptide repeat (PPR) superfamily protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT1G74770.1 Arabidopsis thaliana 0.49 zinc ion binding SRR331224:arabidopsis root in control condition SRR1524941:iron-deficiency sample #1 SRR1524945:iron-deficiency sample #2 SRR1524946:iron-deficiency sample #3 SRR331228:RNAseq for arabidopsis in iron deficiency condition AT1G74780.1 Arabidopsis thaliana 0.80 Nodulin-like / Major Facilitator Superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G74820.1 Arabidopsis thaliana 0.94 RmlC-like cupins superfamily protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G74830.1 Arabidopsis thaliana 0.45 Protein of unknown function, DUF593 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G74870.1 Arabidopsis thaliana 0.50 RING/U-box superfamily protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G74890.1 Arabidopsis thaliana 0.31 response regulator 15 SRR978413:18O at 0mm 24hr AT1G74910.2 Arabidopsis thaliana 0.40 ADP-glucose pyrophosphorylase family protein SRR1652314:atrtf2-1 AT1G74940.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF581) SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G74960.1 Arabidopsis thaliana 0.45 fatty acid biosynthesis 1 SRR1039918:GSM1276505: ColxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G75000.1 Arabidopsis thaliana 0.30 GNS1/SUR4 membrane protein family SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G75020.1 Arabidopsis thaliana 0.30 lysophosphatidyl acyltransferase 4 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G75020.2 Arabidopsis thaliana 0.33 lysophosphatidyl acyltransferase 4 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G75160.1 Arabidopsis thaliana 0.78 Protein of unknown function (DUF620) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G75163.1 Arabidopsis thaliana 0.32 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq AT1G75166.1 Arabidopsis thaliana 0.44 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT1G75170.2 Arabidopsis thaliana 0.49 Sec14p-like phosphatidylinositol transfer family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G75170.3 Arabidopsis thaliana 0.50 Sec14p-like phosphatidylinositol transfer family protein SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G75230.2 Arabidopsis thaliana 0.34 DNA glycosylase superfamily protein SRR1005393:GSM1242382: cmt23_mRNA_rep1; Arabidopsis thaliana; RNA-Seq AT1G75250.1 Arabidopsis thaliana 0.39 RAD-like 6 SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G75270.1 Arabidopsis thaliana 0.72 dehydroascorbate reductase 2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G75290.1 Arabidopsis thaliana 0.44 NAD(P)-binding Rossmann-fold superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G75340.1 Arabidopsis thaliana 0.33 Zinc finger C-x8-C-x5-C-x3-H type family protein SRR1144843:WS 7 days on CIM AT1G75360.1 Arabidopsis thaliana 0.82 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G75370.2 Arabidopsis thaliana 0.31 Sec14p-like phosphatidylinositol transfer family protein SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G75380.1 Arabidopsis thaliana 0.42 bifunctional nuclease in basal defense response 1 SRR446042:Avr.12h.B AT1G75390.2 Arabidopsis thaliana 0.46 basic leucine-zipper 44 SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G75440.1 Arabidopsis thaliana 0.36 ubiquitin-conjugating enzyme 16 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G75490.1 Arabidopsis thaliana 0.55 Integrase-type DNA-binding superfamily protein SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT1G75520.1 Arabidopsis thaliana 0.57 SHI-related sequence 5 SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT1G75600.1 Arabidopsis thaliana 0.42 Histone superfamily protein SRR364678:nonGFP sample AT1G75630.1 Arabidopsis thaliana 0.30 vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G75720.1 Arabidopsis thaliana 0.58 Plant protein of unknown function (DUF827) SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G75720.2 Arabidopsis thaliana 0.35 Plant protein of unknown function (DUF827) SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G75780.1 Arabidopsis thaliana 0.64 tubulin beta-1 chain ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G75870.1 Arabidopsis thaliana 0.73 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G75920.2 Arabidopsis thaliana 0.75 GDSL-like Lipase/Acylhydrolase superfamily protein SRR1061358:GSM1298726: FB1_HiSeqMplex; Arabidopsis thaliana; RNA-Seq SRR1061359:GSM1298727: FB2_HiSeq; Arabidopsis thaliana; RNA-Seq SRR1061360:GSM1298728: FB2_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT1G75940.1 Arabidopsis thaliana 0.41 Glycosyl hydrolase superfamily protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT1G75990.1 Arabidopsis thaliana 0.45 PAM domain (PCI/PINT associated module) protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G76062.1 Arabidopsis thaliana 0.33 MIR835a; miRNA SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G76065.1 Arabidopsis thaliana 0.58 LYR family of Fe/S cluster biogenesis protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G76135.1 Arabidopsis thaliana 0.45 MIR394B; miRNA SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq AT1G76170.1 Arabidopsis thaliana 0.34 2-thiocytidine tRNA biosynthesis protein, TtcA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT1G76190.1 Arabidopsis thaliana 0.32 SAUR-like auxin-responsive protein family SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT1G76210.1 Arabidopsis thaliana 0.32 Arabidopsis protein of unknown function (DUF241) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G76220.1 Arabidopsis thaliana 0.34 Arabidopsis protein of unknown function (DUF241) SRR974750:GSM1226366: mRNASS-Dark_2; Arabidopsis thaliana; RNA-Seq AT1G76240.1 Arabidopsis thaliana 0.31 Arabidopsis protein of unknown function (DUF241) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G76260.1 Arabidopsis thaliana 0.35 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G76280.1 Arabidopsis thaliana 0.35 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1652314:atrtf2-1 AT1G76280.2 Arabidopsis thaliana 0.43 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1652314:atrtf2-1 AT1G76290.1 Arabidopsis thaliana 0.51 AMP-dependent synthetase and ligase family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G76330.1 Arabidopsis thaliana 0.39 pre-tRNA SRR499985:col-0 replicate 2 AT1G76360.1 Arabidopsis thaliana 0.39 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G76370.1 Arabidopsis thaliana 0.93 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G76440.2 Arabidopsis thaliana 0.36 HSP20-like chaperones superfamily protein SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT1G76470.1 Arabidopsis thaliana 0.36 NAD(P)-binding Rossmann-fold superfamily protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G76500.1 Arabidopsis thaliana 0.46 Predicted AT-hook DNA-binding family protein SRR1039918:GSM1276505: ColxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G76570.1 Arabidopsis thaliana 0.39 Chlorophyll A-B binding family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G76600.1 Arabidopsis thaliana 0.31 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G76650.2 Arabidopsis thaliana 0.34 calmodulin-like 38 SRR627677:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627678:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627679:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627680:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627683:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq SRR627684:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq AT1G76650.3 Arabidopsis thaliana 0.45 calmodulin-like 38 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G76680.1 Arabidopsis thaliana 0.34 12-oxophytodienoate reductase 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G76680.2 Arabidopsis thaliana 0.55 12-oxophytodienoate reductase 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G76705.1 Arabidopsis thaliana 0.30 calmodulin binding SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G76720.1 Arabidopsis thaliana 0.75 eukaryotic translation initiation factor 2 (eIF-2) family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G76728.1 Arabidopsis thaliana 0.55 Unknown SRR1013909:responses to BL AT1G76770.1 Arabidopsis thaliana 0.45 HSP20-like chaperones superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G76800.1 Arabidopsis thaliana 0.51 Vacuolar iron transporter (VIT) family protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT1G76954.1 Arabidopsis thaliana 0.44 Defensin-like (DEFL) family protein SRR1046855:GSM1287120: Arabidopsis thaliana Edi-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT1G76965.1 Arabidopsis thaliana 0.83 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G76980.1 Arabidopsis thaliana 0.41 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G76990.4 Arabidopsis thaliana 0.37 ACT domain repeat 3 SRR1260037:P+_hps7_R2 SRR1260035:P-_hps7_R2 AT1G76990.5 Arabidopsis thaliana 0.41 ACT domain repeat 3 SRR988549:GSM1232785: WT_mRNA; Arabidopsis thaliana; RNA-Seq AT1G77000.2 Arabidopsis thaliana 0.37 RNI-like superfamily protein SRR364677:GFP sample AT1G77090.1 Arabidopsis thaliana 0.36 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein SRR1652314:atrtf2-1 AT1G77100.1 Arabidopsis thaliana 0.40 Peroxidase superfamily protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G77110.1 Arabidopsis thaliana 0.52 Auxin efflux carrier family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT1G77120.1 Arabidopsis thaliana 0.32 alcohol dehydrogenase 1 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G77122.1 Arabidopsis thaliana 0.46 Uncharacterised protein family UPF0090 SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT1G77138.1 Arabidopsis thaliana 0.45 other RNA SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G77145.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF506) SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G77150.1 Arabidopsis thaliana 0.35 Pentatricopeptide repeat (PPR) superfamily protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT1G77190.1 Arabidopsis thaliana 0.77 pre-tRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT1G77200.1 Arabidopsis thaliana 0.31 Integrase-type DNA-binding superfamily protein SRR345551:GSM797869: Col_MS_RNASeq_Rep#1 SRR1302271:GSM1400498: Sample_fhy1-1-1_RNA-seq; Arabidopsis thaliana; RNA-Seq SRR1302272:GSM1400499: Sample_fhy1-1-2_RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G77235.1 Arabidopsis thaliana 0.87 MIR402; miRNA SRR1257397:GSM1371359: mock T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT1G77300.1 Arabidopsis thaliana 0.41 histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) SRR1652314:atrtf2-1 AT1G77320.1 Arabidopsis thaliana 0.37 transcription coactivators SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G77360.1 Arabidopsis thaliana 0.51 Tetratricopeptide repeat (TPR)-like superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G77370.1 Arabidopsis thaliana 0.42 Glutaredoxin family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G77380.1 Arabidopsis thaliana 0.50 amino acid permease 3 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT1G77390.1 Arabidopsis thaliana 0.39 CYCLIN A1;2 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G77440.1 Arabidopsis thaliana 0.50 20S proteasome beta subunit C2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G77450.1 Arabidopsis thaliana 0.40 NAC domain containing protein 32 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT1G77600.2 Arabidopsis thaliana 0.44 ARM repeat superfamily protein SRR1652314:atrtf2-1 AT1G77640.1 Arabidopsis thaliana 0.34 Integrase-type DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G77650.1 Arabidopsis thaliana 0.43 F-box associated ubiquitination effector family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G77670.1 Arabidopsis thaliana 0.60 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G77680.1 Arabidopsis thaliana 0.30 Ribonuclease II/R family protein SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample SRR364678:nonGFP sample AT1G77682.1 Arabidopsis thaliana 0.63 Plant thionin family protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT1G77730.1 Arabidopsis thaliana 0.33 Pleckstrin homology (PH) domain superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G77746.1 Arabidopsis thaliana 0.74 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G77760.1 Arabidopsis thaliana 0.38 nitrate reductase 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT1G77765.3 Arabidopsis thaliana 0.30 Unknown SRR1046887:GSM1287152: Arabidopsis thaliana Wil-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046888:GSM1287153: Arabidopsis thaliana Wil-2 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G77815.1 Arabidopsis thaliana 0.41 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT1G77880.1 Arabidopsis thaliana 0.33 Galactose oxidase/kelch repeat superfamily protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT1G77920.1 Arabidopsis thaliana 0.30 bZIP transcription factor family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G77960.1 Arabidopsis thaliana 0.42 Unknown SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT1G78260.1 Arabidopsis thaliana 0.57 RNA-binding (RRM/RBD/RNP motifs) family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G78320.1 Arabidopsis thaliana 0.56 glutathione S-transferase TAU 23 SRR1046887:GSM1287152: Arabidopsis thaliana Wil-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046935:GSM1287193: Wil-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046936:GSM1287194: Wil-2 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT1G78340.1 Arabidopsis thaliana 0.36 glutathione S-transferase TAU 22 SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G78360.1 Arabidopsis thaliana 0.35 glutathione S-transferase TAU 21 SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G78370.1 Arabidopsis thaliana 0.46 glutathione S-transferase TAU 20 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT1G78410.1 Arabidopsis thaliana 0.30 VQ motif-containing protein SRR1578857:GSM1507897: C24 O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT1G78460.1 Arabidopsis thaliana 0.85 SOUL heme-binding family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G78480.1 Arabidopsis thaliana 0.38 Prenyltransferase family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G78660.2 Arabidopsis thaliana 0.33 gamma-glutamyl hydrolase 1 SRR364677:GFP sample SRR364678:nonGFP sample AT1G78660.3 Arabidopsis thaliana 0.44 gamma-glutamyl hydrolase 1 SRR446038:Vir.6h.B AT1G78700.1 Arabidopsis thaliana 0.35 BES1/BZR1 homolog 4 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G78780.3 Arabidopsis thaliana 0.55 pathogenesis-related family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G78780.4 Arabidopsis thaliana 0.45 pathogenesis-related family protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT1G78790.1 Arabidopsis thaliana 0.51 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G78790.2 Arabidopsis thaliana 0.62 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G78810.2 Arabidopsis thaliana 0.42 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G78860.1 Arabidopsis thaliana 0.50 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G78900.2 Arabidopsis thaliana 0.44 vacuolar ATP synthase subunit A SRR364677:GFP sample AT1G78920.2 Arabidopsis thaliana 0.31 vacuolar H+-pyrophosphatase 2 SRR584119:GSM1017160: NMD_MOCK_R1; Arabidopsis thaliana; RNA-Seq AT1G78930.1 Arabidopsis thaliana 0.32 Mitochondrial transcription termination factor family protein SRR1652314:atrtf2-1 AT1G78940.1 Arabidopsis thaliana 0.73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G78970.1 Arabidopsis thaliana 0.37 lupeol synthase 1 SRR1652314:atrtf2-1 AT1G78990.1 Arabidopsis thaliana 0.30 HXXXD-type acyl-transferase family protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT1G79040.1 Arabidopsis thaliana 0.34 photosystem II subunit R ERR229858:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G79070.1 Arabidopsis thaliana 0.35 SNARE-associated protein-related SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G79075.1 Arabidopsis thaliana 0.77 other RNA SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT1G79090.1 Arabidopsis thaliana 0.32 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G79110.1 Arabidopsis thaliana 0.38 zinc ion binding SRR609415:RNAseq data from activation tagging mutant of OSD1 in bon1-2 AT1G79170.1 Arabidopsis thaliana 0.33 Unknown SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo AT1G79230.1 Arabidopsis thaliana 0.52 mercaptopyruvate sulfurtransferase 1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G79240.1 Arabidopsis thaliana 0.48 pre-tRNA SRR499986:gun1 replicate 1 AT1G79250.1 Arabidopsis thaliana 0.61 AGC kinase 1.7 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G79250.2 Arabidopsis thaliana 0.31 AGC kinase 1.7 SRR800754:GSM1111914: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G79280.3 Arabidopsis thaliana 0.35 nuclear pore anchor SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq AT1G79310.1 Arabidopsis thaliana 0.49 metacaspase 7 SRR364678:nonGFP sample AT1G79360.1 Arabidopsis thaliana 0.34 organic cation/carnitine transporter 2 SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT1G79370.1 Arabidopsis thaliana 0.57 cytochrome P450, family 79, subfamily C, polypeptide 1 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT1G79450.2 Arabidopsis thaliana 0.51 ALA-interacting subunit 5 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT1G79470.1 Arabidopsis thaliana 0.48 Aldolase-type TIM barrel family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT1G79510.2 Arabidopsis thaliana 0.46 Uncharacterized conserved protein (DUF2358) SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G79520.2 Arabidopsis thaliana 0.36 Cation efflux family protein SRR1144842:be1-3 7 days on CIM AT1G79550.2 Arabidopsis thaliana 0.31 phosphoglycerate kinase ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G79580.3 Arabidopsis thaliana 0.56 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein SRR1144843:WS 7 days on CIM AT1G79590.1 Arabidopsis thaliana 0.37 syntaxin of plants 52 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G79630.3 Arabidopsis thaliana 0.37 Protein phosphatase 2C family protein SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT1G79640.1 Arabidopsis thaliana 0.41 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G79660.1 Arabidopsis thaliana 0.62 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G79680.1 Arabidopsis thaliana 0.38 WALL ASSOCIATED KINASE (WAK)-LIKE 10 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT1G79710.1 Arabidopsis thaliana 0.46 Major facilitator superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT1G79720.1 Arabidopsis thaliana 0.37 Eukaryotic aspartyl protease family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G79770.1 Arabidopsis thaliana 0.51 Protein of unknown function (DUF1677) SRR826412:Sample Control BR5 AT1G79780.1 Arabidopsis thaliana 0.61 Uncharacterised protein family (UPF0497) DRR008476: DRR008478:Arabidopsis ibm2-2 mRNA_seq AT1G79790.1 Arabidopsis thaliana 0.31 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G79810.2 Arabidopsis thaliana 0.51 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT1G79840.1 Arabidopsis thaliana 0.35 HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G79860.1 Arabidopsis thaliana 0.80 RHO guanyl-nucleotide exchange factor 12 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G79880.2 Arabidopsis thaliana 0.32 RNA recognition motif (RRM)-containing protein SRR1652314:atrtf2-1 AT1G79900.1 Arabidopsis thaliana 0.32 Mitochondrial substrate carrier family protein SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT1G79910.1 Arabidopsis thaliana 0.54 Regulator of Vps4 activity in the MVB pathway protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G79915.1 Arabidopsis thaliana 0.56 Putative methyltransferase family protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G79920.1 Arabidopsis thaliana 0.42 Heat shock protein 70 (Hsp 70) family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT1G79940.1 Arabidopsis thaliana 0.33 DnaJ / Sec63 Brl domains-containing protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT1G80000.2 Arabidopsis thaliana 0.45 CASC3/Barentsz eIF4AIII binding SRR1652314:atrtf2-1 AT1G80030.1 Arabidopsis thaliana 0.33 Molecular chaperone Hsp40/DnaJ family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G80040.1 Arabidopsis thaliana 0.57 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G80080.1 Arabidopsis thaliana 0.36 Leucine-rich repeat (LRR) family protein SRR1298726:GSM1398479: iSPCH 6h rep1; Arabidopsis thaliana; RNA-Seq SRR1298727:GSM1398480: iSPCH 6h rep2; Arabidopsis thaliana; RNA-Seq SRR1298728:GSM1398481: iSPCH 8h rep1; Arabidopsis thaliana; RNA-Seq SRR1298729:GSM1398482: iSPCH 8h rep2; Arabidopsis thaliana; RNA-Seq AT1G80133.1 Arabidopsis thaliana 0.83 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G80160.2 Arabidopsis thaliana 0.44 Lactoylglutathione lyase / glyoxalase I family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 AT1G80170.1 Arabidopsis thaliana 0.41 Pectin lyase-like superfamily protein SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq SRR764886:GSM1088167: rdm16-2 RNA-seq; Arabidopsis thaliana; RNA-Seq AT1G80190.1 Arabidopsis thaliana 0.44 partner of SLD five 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G80200.1 Arabidopsis thaliana 0.52 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G80210.2 Arabidopsis thaliana 0.41 Mov34/MPN/PAD-1 family protein SRR1652314:atrtf2-1 AT1G80320.1 Arabidopsis thaliana 0.40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G80325.1 Arabidopsis thaliana 0.39 other RNA SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT1G80330.1 Arabidopsis thaliana 0.66 gibberellin 3-oxidase 4 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT1G80370.1 Arabidopsis thaliana 0.30 Cyclin A2;4 SRR1144843:WS 7 days on CIM AT1G80380.3 Arabidopsis thaliana 0.35 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT1G80390.1 Arabidopsis thaliana 0.32 indole-3-acetic acid inducible 15 ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT1G80420.1 Arabidopsis thaliana 0.37 BRCT domain-containing DNA repair protein SRR1652314:atrtf2-1 AT1G80470.1 Arabidopsis thaliana 0.74 F-box/RNI-like/FBD-like domains-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT1G80555.1 Arabidopsis thaliana 0.32 Isocitrate/isopropylmalate dehydrogenase family protein SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT1G80590.1 Arabidopsis thaliana 0.36 WRKY DNA-binding protein 66 SRR1144845:be1-3 2 days on SIM AT1G80670.1 Arabidopsis thaliana 0.35 Transducin/WD40 repeat-like superfamily protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT1G80730.1 Arabidopsis thaliana 0.56 zinc-finger protein 1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT1G80780.2 Arabidopsis thaliana 0.71 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR1652314:atrtf2-1 AT1G80780.3 Arabidopsis thaliana 0.38 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR520237:GSM958257: WT-RNA-1; Arabidopsis thaliana; RNA-Seq SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT1G80830.1 Arabidopsis thaliana 0.42 natural resistance-associated macrophage protein 1 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT1G80831.1 Arabidopsis thaliana 0.35 Unknown SRR609410:RNAseq data from loss of function mutant of BON1 in Ws SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT1G80840.1 Arabidopsis thaliana 0.52 WRKY DNA-binding protein 40 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT1G80910.1 Arabidopsis thaliana 0.30 Protein of unknown function (DUF1712) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT1G80970.2 Arabidopsis thaliana 0.40 XH domain-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G01008.1 Arabidopsis thaliana 0.51 Unknown SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT2G01010.1 Arabidopsis thaliana 0.35 rRNA SRR1179994:GSM1337744: Arabidopsis thaliana Ws-0 X Oy-0 seedling, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR1179995:GSM1337744: Arabidopsis thaliana Ws-0 X Oy-0 seedling, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT2G01021.1 Arabidopsis thaliana 0.50 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq AT2G01029.1 Arabidopsis thaliana 0.38 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G01060.1 Arabidopsis thaliana 0.32 myb-like HTH transcriptional regulator family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G01130.1 Arabidopsis thaliana 0.38 DEA(D/H)-box RNA helicase family protein SRR1652314:atrtf2-1 AT2G01170.2 Arabidopsis thaliana 0.37 bidirectional amino acid transporter 1 SRR1652314:atrtf2-1 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G01190.1 Arabidopsis thaliana 0.31 Octicosapeptide/Phox/Bem1p family protein SRR1039918:GSM1276505: ColxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G01200.2 Arabidopsis thaliana 0.30 indole-3-acetic acid inducible 32 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G01240.1 Arabidopsis thaliana 0.42 Reticulon family protein SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G01260.1 Arabidopsis thaliana 0.32 Protein of unknown function (DUF789) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G01275.1 Arabidopsis thaliana 0.52 RING/FYVE/PHD zinc finger superfamily protein SRR364678:nonGFP sample AT2G01275.2 Arabidopsis thaliana 0.80 RING/FYVE/PHD zinc finger superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G01300.1 Arabidopsis thaliana 0.38 Unknown SRR364678:nonGFP sample AT2G01310.1 Arabidopsis thaliana 0.50 Unknown SRR764886:GSM1088167: rdm16-2 RNA-seq; Arabidopsis thaliana; RNA-Seq AT2G01340.1 Arabidopsis thaliana 0.34 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G01350.2 Arabidopsis thaliana 0.32 quinolinate phoshoribosyltransferase SRR1652314:atrtf2-1 SRR1652315:prp8-7 AT2G01350.4 Arabidopsis thaliana 0.44 quinolinate phoshoribosyltransferase SRR1652314:atrtf2-1 AT2G01390.1 Arabidopsis thaliana 0.54 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT2G01422.2 Arabidopsis thaliana 0.49 Unknown SRR1521947:GSM1441333: wt1; Arabidopsis thaliana; RNA-Seq AT2G01460.2 Arabidopsis thaliana 0.39 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G01510.1 Arabidopsis thaliana 0.32 Tetratricopeptide repeat (TPR)-like superfamily protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT2G01540.1 Arabidopsis thaliana 0.63 Calcium-dependent lipid-binding (CaLB domain) family protein SRR364677:GFP sample AT2G01630.2 Arabidopsis thaliana 0.69 O-Glycosyl hydrolases family 17 protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT2G01667.1 Arabidopsis thaliana 0.55 Unknown SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G01690.2 Arabidopsis thaliana 0.62 ARM repeat superfamily protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G01710.1 Arabidopsis thaliana 0.37 Chaperone DnaJ-domain superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G01810.1 Arabidopsis thaliana 0.45 RING/FYVE/PHD zinc finger superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G01830.2 Arabidopsis thaliana 0.33 CHASE domain containing histidine kinase protein SRR1144845:be1-3 2 days on SIM AT2G01980.1 Arabidopsis thaliana 0.35 sodium proton exchanger, putative (NHX7) (SOS1) SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G01990.1 Arabidopsis thaliana 0.40 Unknown SRR1144845:be1-3 2 days on SIM AT2G02010.1 Arabidopsis thaliana 0.40 glutamate decarboxylase 4 SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G02020.1 Arabidopsis thaliana 0.64 Major facilitator superfamily protein SRR826412:Sample Control BR5 AT2G02020.2 Arabidopsis thaliana 0.37 Major facilitator superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G02026.1 Arabidopsis thaliana 0.47 Unknown SRR1037376:RNA-Seq-RNA-Seq_replicate_2 AT2G02061.1 Arabidopsis thaliana 0.52 Nucleotide-diphospho-sugar transferase family protein SRR1598767:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT2G02080.2 Arabidopsis thaliana 0.64 indeterminate(ID)-domain 4 SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT2G02135.1 Arabidopsis thaliana 0.96 Unknown SRR1257393:GSM1371355: mock NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G02140.1 Arabidopsis thaliana 0.89 low-molecular-weight cysteine-rich 72 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G02147.1 Arabidopsis thaliana 0.50 low-molecular-weight cysteine-rich 73 SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G02148.1 Arabidopsis thaliana 0.31 Unknown SRR1652314:atrtf2-1 AT2G02230.1 Arabidopsis thaliana 0.59 phloem protein 2-B1 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G02300.1 Arabidopsis thaliana 0.44 phloem protein 2-B5 SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G02310.1 Arabidopsis thaliana 0.40 phloem protein 2-B6 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G02320.1 Arabidopsis thaliana 0.48 phloem protein 2-B7 SRR1578857:GSM1507897: C24 O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G02330.1 Arabidopsis thaliana 0.48 Unknown SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G02390.1 Arabidopsis thaliana 0.34 glutathione S-transferase zeta 1 SRR1508375:GSM1429457: Can-0-IP2; Arabidopsis thaliana; RNA-Seq SRR1508376:GSM1429457: Can-0-IP2; Arabidopsis thaliana; RNA-Seq AT2G02470.2 Arabidopsis thaliana 0.39 alfin-like 6 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G02498.1 Arabidopsis thaliana 0.37 Unknown SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G02515.1 Arabidopsis thaliana 0.46 Unknown SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT2G02580.1 Arabidopsis thaliana 0.43 cytochrome P450, family 71, subfamily B, polypeptide 9 SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT2G02660.1 Arabidopsis thaliana 0.63 F-box associated ubiquitination effector family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G02700.1 Arabidopsis thaliana 0.59 Cysteine/Histidine-rich C1 domain family protein SRR1598767:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT2G02720.1 Arabidopsis thaliana 0.88 Pectate lyase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G02730.1 Arabidopsis thaliana 0.58 Protein of unknown function (DUF1664) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G02730.2 Arabidopsis thaliana 0.39 Protein of unknown function (DUF1664) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G02741.1 Arabidopsis thaliana 0.40 MIR840a; miRNA SRR1001903:GSM1239081: ibh1 mutant #1; Arabidopsis thaliana; RNA-Seq SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT2G02850.1 Arabidopsis thaliana 0.35 plantacyanin SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT2G02860.1 Arabidopsis thaliana 0.32 sucrose transporter 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G02960.3 Arabidopsis thaliana 0.46 RING/FYVE/PHD zinc finger superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G02960.4 Arabidopsis thaliana 0.55 RING/FYVE/PHD zinc finger superfamily protein SRR364677:GFP sample AT2G02970.1 Arabidopsis thaliana 0.83 GDA1/CD39 nucleoside phosphatase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G03020.1 Arabidopsis thaliana 0.42 Heat shock protein HSP20/alpha crystallin family SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G03060.1 Arabidopsis thaliana 0.38 AGAMOUS-like 30 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G03060.2 Arabidopsis thaliana 0.56 AGAMOUS-like 30 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G03200.1 Arabidopsis thaliana 0.60 Eukaryotic aspartyl protease family protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT2G03220.1 Arabidopsis thaliana 0.31 fucosyltransferase 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G03260.1 Arabidopsis thaliana 0.49 EXS (ERD1/XPR1/SYG1) family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT2G03280.1 Arabidopsis thaliana 0.37 O-fucosyltransferase family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G03280.2 Arabidopsis thaliana 0.60 O-fucosyltransferase family protein SRR1652314:atrtf2-1 AT2G03340.1 Arabidopsis thaliana 0.34 WRKY DNA-binding protein 3 SRR1652314:atrtf2-1 AT2G03390.1 Arabidopsis thaliana 0.32 uvrB/uvrC motif-containing protein SRR1652314:atrtf2-1 AT2G03410.1 Arabidopsis thaliana 0.82 Mo25 family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G03430.1 Arabidopsis thaliana 0.33 Ankyrin repeat family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G03480.1 Arabidopsis thaliana 0.43 QUASIMODO2 LIKE 2 SRR1652314:atrtf2-1 AT2G03480.2 Arabidopsis thaliana 0.39 QUASIMODO2 LIKE 2 SRR1652314:atrtf2-1 AT2G03490.1 Arabidopsis thaliana 1.00 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT2G03520.1 Arabidopsis thaliana 0.59 ureide permease 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G03530.1 Arabidopsis thaliana 0.34 ureide permease 2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G03570.1 Arabidopsis thaliana 0.58 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G03590.1 Arabidopsis thaliana 0.79 ureide permease 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G03600.1 Arabidopsis thaliana 0.71 ureide permease 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G03600.5 Arabidopsis thaliana 0.91 ureide permease 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G03640.1 Arabidopsis thaliana 0.58 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain SRR501597:GSM938343: WT_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq AT2G03660.1 Arabidopsis thaliana 0.80 pre-tRNA SRR1257393:GSM1371355: mock NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G03700.1 Arabidopsis thaliana 0.30 pre-tRNA SRR499986:gun1 replicate 1 AT2G03720.1 Arabidopsis thaliana 0.38 Adenine nucleotide alpha hydrolases-like superfamily protein SRR364677:GFP sample AT2G03750.1 Arabidopsis thaliana 0.49 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G03780.1 Arabidopsis thaliana 0.33 Translin family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G03822.1 Arabidopsis thaliana 0.52 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G03830.1 Arabidopsis thaliana 0.50 Unknown SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT2G03840.1 Arabidopsis thaliana 0.87 tetraspanin13 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G03870.1 Arabidopsis thaliana 0.33 Small nuclear ribonucleoprotein family protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq AT2G03890.2 Arabidopsis thaliana 0.34 phosphoinositide 4-kinase gamma 7 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G03900.1 Arabidopsis thaliana 0.48 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G03938.1 Arabidopsis thaliana 0.75 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT2G03955.1 Arabidopsis thaliana 0.45 Cysteine-rich protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT2G03960.1 Arabidopsis thaliana 0.47 Unknown SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT2G03980.1 Arabidopsis thaliana 0.39 GDSL-like Lipase/Acylhydrolase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G04039.1 Arabidopsis thaliana 0.30 Unknown SRR1019222:GSM1252087: edm2-4 RNA-seq; Arabidopsis thaliana; RNA-Seq AT2G04039.3 Arabidopsis thaliana 0.45 Unknown SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT2G04040.1 Arabidopsis thaliana 0.55 MATE efflux family protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT2G04045.1 Arabidopsis thaliana 0.33 Defensin-like (DEFL) family protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G04050.1 Arabidopsis thaliana 0.55 MATE efflux family protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT2G04063.1 Arabidopsis thaliana 0.31 glycine-rich protein ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G04070.1 Arabidopsis thaliana 0.60 MATE efflux family protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT2G04090.1 Arabidopsis thaliana 0.37 MATE efflux family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G04100.1 Arabidopsis thaliana 0.33 MATE efflux family protein SRR515180:5dpi Pst Col-0, ddc control, mRNA-Seq, run 1, Bioreplicate 1 SRR515181:5dpi Pst Col-0, ddc control, mRNA-Seq, run 1, Bioreplicate 1 AT2G04135.1 Arabidopsis thaliana 0.38 transposable element gene SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G04160.1 Arabidopsis thaliana 0.33 Subtilisin-like serine endopeptidase family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G04170.2 Arabidopsis thaliana 0.78 TRAF-like family protein SRR364677:GFP sample AT2G04190.1 Arabidopsis thaliana 0.64 TRAF-like family protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G04220.1 Arabidopsis thaliana 0.79 Plant protein of unknown function (DUF868) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G04270.1 Arabidopsis thaliana 0.36 RNAse E/G-like SRR1652314:atrtf2-1 AT2G04290.1 Arabidopsis thaliana 0.33 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT2G04430.1 Arabidopsis thaliana 0.33 nudix hydrolase homolog 5 SRR446035:Avr.6h.A AT2G04450.1 Arabidopsis thaliana 0.49 nudix hydrolase homolog 6 SRR446035:Avr.6h.A AT2G04460.1 Arabidopsis thaliana 0.40 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT2G04480.1 Arabidopsis thaliana 0.79 Unknown SRR1144843:WS 7 days on CIM AT2G04495.1 Arabidopsis thaliana 0.41 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G04500.1 Arabidopsis thaliana 0.56 Cysteine/Histidine-rich C1 domain family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT2G04515.1 Arabidopsis thaliana 0.55 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G04560.1 Arabidopsis thaliana 0.31 transferases, transferring glycosyl groups SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT2G04610.1 Arabidopsis thaliana 0.71 Unknown SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G04675.1 Arabidopsis thaliana 0.33 Unknown SRR1046871:GSM1287136: Arabidopsis thaliana Oy-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G04750.1 Arabidopsis thaliana 0.45 Actin binding Calponin homology (CH) domain-containing protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G04780.2 Arabidopsis thaliana 0.58 FASCICLIN-like arabinoogalactan 7 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G04790.1 Arabidopsis thaliana 0.53 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G04790.3 Arabidopsis thaliana 0.42 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G04845.2 Arabidopsis thaliana 0.35 Acyl-CoA N-acyltransferases (NAT) superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G04850.1 Arabidopsis thaliana 0.30 Auxin-responsive family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G04852.1 Arabidopsis thaliana 0.37 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G04870.1 Arabidopsis thaliana 0.40 Unknown SRR068978:GSM607730: Ler-WTxCol-met1_Endosperm AT2G05117.1 Arabidopsis thaliana 0.43 SCR-like 9 SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT2G05150.1 Arabidopsis thaliana 0.89 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G05160.1 Arabidopsis thaliana 0.43 CCCH-type zinc fingerfamily protein with RNA-binding domain SRR364677:GFP sample AT2G05170.1 Arabidopsis thaliana 0.31 vacuolar protein sorting 11 SRR1652314:atrtf2-1 AT2G05350.1 Arabidopsis thaliana 0.36 Unknown SRR307069:GSM756822: Col x Ler endosperm RNA-seq SRR307070:GSM756822: Col x Ler endosperm RNA-seq AT2G05380.2 Arabidopsis thaliana 0.45 glycine-rich protein 3 short isoform SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT2G05400.1 Arabidopsis thaliana 0.31 Ubiquitin-specific protease family C19-related protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G05400.2 Arabidopsis thaliana 0.33 Ubiquitin-specific protease family C19-related protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT2G05440.1 Arabidopsis thaliana 0.58 GLYCINE RICH PROTEIN 9 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G05440.7 Arabidopsis thaliana 0.36 GLYCINE RICH PROTEIN 9 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G05440.8 Arabidopsis thaliana 0.40 GLYCINE RICH PROTEIN 9 SRR420818:phosphate-deficient sample #3 AT2G05441.1 Arabidopsis thaliana 0.38 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G05510.3 Arabidopsis thaliana 0.34 Glycine-rich protein family SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G05510.5 Arabidopsis thaliana 0.72 Glycine-rich protein family SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G05510.6 Arabidopsis thaliana 0.77 Glycine-rich protein family SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G05520.6 Arabidopsis thaliana 0.35 glycine-rich protein 3 SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT2G05635.1 Arabidopsis thaliana 0.53 DNA repair DEAD helicase RAD3/XP-D subfamily protein SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT2G05755.1 Arabidopsis thaliana 0.45 Nodulin MtN21 /EamA-like transporter family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G05765.1 Arabidopsis thaliana 0.36 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G05786.1 Arabidopsis thaliana 0.30 Unknown SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT2G05830.2 Arabidopsis thaliana 0.44 NagB/RpiA/CoA transferase-like superfamily protein SRR1652314:atrtf2-1 AT2G05840.1 Arabidopsis thaliana 0.33 20S proteasome subunit PAA2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G05840.2 Arabidopsis thaliana 0.52 20S proteasome subunit PAA2 SRR515321:GSM951351: RVE8:GR_DEX_3; Arabidopsis thaliana; RNA-Seq AT2G05850.1 Arabidopsis thaliana 0.94 serine carboxypeptidase-like 38 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G05970.1 Arabidopsis thaliana 0.37 F-box family protein with a domain of unknown function (DUF295) SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G06045.1 Arabidopsis thaliana 0.36 transposable element gene SRR364677:GFP sample AT2G06220.1 Arabidopsis thaliana 0.31 transposable element gene SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT2G06245.1 Arabidopsis thaliana 0.54 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT2G06335.1 Arabidopsis thaliana 0.42 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT2G06480.1 Arabidopsis thaliana 0.31 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT2G06590.1 Arabidopsis thaliana 0.30 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G06667.1 Arabidopsis thaliana 0.47 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G06822.1 Arabidopsis thaliana 0.46 Unknown SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT2G06885.1 Arabidopsis thaliana 0.39 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT2G06890.1 Arabidopsis thaliana 0.62 transposable element gene SRR924659:hda6 polIV mutant polyA RNA, non-stranded SRR924661:hda6 polV mutant polyA RNA, non-stranded AT2G06906.1 Arabidopsis thaliana 0.48 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G07040.1 Arabidopsis thaliana 0.89 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G07180.2 Arabidopsis thaliana 0.57 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G07360.2 Arabidopsis thaliana 0.37 SH3 domain-containing protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT2G07363.1 Arabidopsis thaliana 0.63 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G07664.1 Arabidopsis thaliana 0.49 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT2G07667.1 Arabidopsis thaliana 0.55 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT2G07667.2 Arabidopsis thaliana 0.34 Unknown ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT2G07705.1 Arabidopsis thaliana 0.46 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT2G07708.2 Arabidopsis thaliana 0.35 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT2G07712.1 Arabidopsis thaliana 0.37 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT2G07716.1 Arabidopsis thaliana 0.30 Unknown SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT2G07719.1 Arabidopsis thaliana 0.38 Putative membrane lipoprotein SRR1046851:GSM1287116: Arabidopsis thaliana Ct-1 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G07721.1 Arabidopsis thaliana 0.31 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G07725.1 Arabidopsis thaliana 0.31 Ribosomal L5P family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT2G07728.1 Arabidopsis thaliana 0.50 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT2G07729.1 Arabidopsis thaliana 0.63 transposable element gene SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT2G07745.1 Arabidopsis thaliana 0.34 pre-tRNA SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT2G07746.1 Arabidopsis thaliana 0.32 pre-tRNA SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq AT2G07748.1 Arabidopsis thaliana 0.65 pre-tRNA SRR499986:gun1 replicate 1 AT2G07752.1 Arabidopsis thaliana 0.31 pre-tRNA SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq AT2G07755.1 Arabidopsis thaliana 0.61 pre-tRNA SRR499988:gun1/sig6 replicate 1 AT2G07764.1 Arabidopsis thaliana 0.55 pre-tRNA SRR1105582:GSM1303955: fae1_7-8_C; Arabidopsis thaliana; RNA-Seq AT2G07770.1 Arabidopsis thaliana 0.47 transposable element gene SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G07772.1 Arabidopsis thaliana 0.43 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G07773.1 Arabidopsis thaliana 0.36 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT2G07806.3 Arabidopsis thaliana 0.33 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT2G07807.1 Arabidopsis thaliana 0.42 Unknown SRR627651:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627652:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq AT2G07820.1 Arabidopsis thaliana 0.68 Unknown SRR1257401:GSM1371363: mock Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G07825.1 Arabidopsis thaliana 0.64 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT2G07830.1 Arabidopsis thaliana 0.41 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq AT2G07835.1 Arabidopsis thaliana 0.32 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT2G07981.1 Arabidopsis thaliana 0.38 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G09838.1 Arabidopsis thaliana 0.39 Unknown SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 AT2G09900.1 Arabidopsis thaliana 0.32 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G10020.1 Arabidopsis thaliana 0.31 Unknown SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm AT2G10070.1 Arabidopsis thaliana 0.39 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G10430.1 Arabidopsis thaliana 0.48 Unknown SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT2G10557.1 Arabidopsis thaliana 0.58 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT2G10602.1 Arabidopsis thaliana 0.72 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G10606.1 Arabidopsis thaliana 0.65 MIR396A; miRNA SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT2G10720.1 Arabidopsis thaliana 0.55 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G10735.1 Arabidopsis thaliana 0.34 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G10850.2 Arabidopsis thaliana 0.36 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT2G10940.2 Arabidopsis thaliana 0.32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1652314:atrtf2-1 AT2G10965.1 Arabidopsis thaliana 0.47 Unknown SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT2G10970.1 Arabidopsis thaliana 0.54 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G11135.1 Arabidopsis thaliana 0.45 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT2G11270.1 Arabidopsis thaliana 0.38 citrate synthase-related SRR364677:GFP sample AT2G11271.1 Arabidopsis thaliana 0.35 Unknown SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT2G11522.1 Arabidopsis thaliana 0.42 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G11623.1 Arabidopsis thaliana 0.55 Plant protein 1589 of unknown function SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G11623.2 Arabidopsis thaliana 0.40 Plant protein 1589 of unknown function SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G11650.1 Arabidopsis thaliana 0.33 transposable element gene SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT2G11651.1 Arabidopsis thaliana 0.33 Unknown SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT2G11773.1 Arabidopsis thaliana 0.38 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G11778.1 Arabidopsis thaliana 0.34 Unknown SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT2G11810.2 Arabidopsis thaliana 0.46 monogalactosyldiacylglycerol synthase type C SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G11851.1 Arabidopsis thaliana 0.41 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT2G11852.1 Arabidopsis thaliana 0.50 other RNA SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G11891.1 Arabidopsis thaliana 0.30 Unknown SRR1652316:atrtf2-2He SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq AT2G11910.2 Arabidopsis thaliana 0.45 Unknown SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT2G12190.1 Arabidopsis thaliana 0.40 Cytochrome P450 superfamily protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G12240.1 Arabidopsis thaliana 0.46 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT2G12250.1 Arabidopsis thaliana 0.42 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G12345.1 Arabidopsis thaliana 0.45 transposable element gene SRR501600:GSM938348: met1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501618:GSM938359: ddm1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 AT2G12400.1 Arabidopsis thaliana 0.40 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample AT2G12460.1 Arabidopsis thaliana 0.31 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G12465.1 Arabidopsis thaliana 0.33 low-molecular-weight cysteine-rich 50 SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G12520.1 Arabidopsis thaliana 0.44 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G12685.1 Arabidopsis thaliana 0.54 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G12770.1 Arabidopsis thaliana 0.43 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G12940.1 Arabidopsis thaliana 0.37 Basic-leucine zipper (bZIP) transcription factor family protein SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G12977.1 Arabidopsis thaliana 0.39 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas SRR068983:GSM607731: Ler-WTxCol-WT_Embryo SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G12980.1 Arabidopsis thaliana 0.45 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G12990.1 Arabidopsis thaliana 0.32 transposable element gene SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT2G13126.1 Arabidopsis thaliana 0.51 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G13175.1 Arabidopsis thaliana 0.34 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G13190.1 Arabidopsis thaliana 0.76 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G13273.1 Arabidopsis thaliana 1.00 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G13350.1 Arabidopsis thaliana 0.91 Calcium-dependent lipid-binding (CaLB domain) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G13360.1 Arabidopsis thaliana 0.34 alanine:glyoxylate aminotransferase SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT2G13363.1 Arabidopsis thaliana 0.32 Unknown SRR515329:GSM951355: rve8_DEX_1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G13420.1 Arabidopsis thaliana 0.31 Unknown SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G13422.1 Arabidopsis thaliana 0.40 Unknown SRR764886:GSM1088167: rdm16-2 RNA-seq; Arabidopsis thaliana; RNA-Seq AT2G13463.1 Arabidopsis thaliana 0.38 Unknown SRR446029:Avr 1h A Sample A AT2G13542.1 Arabidopsis thaliana 0.45 Unknown SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA AT2G13547.1 Arabidopsis thaliana 0.83 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G13550.1 Arabidopsis thaliana 0.31 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G13570.1 Arabidopsis thaliana 0.43 nuclear factor Y, subunit B7 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G13620.1 Arabidopsis thaliana 0.44 cation/hydrogen exchanger 15 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G13680.1 Arabidopsis thaliana 0.44 callose synthase 5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G13690.1 Arabidopsis thaliana 0.31 PRLI-interacting factor, putative SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm SRR068971:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068972:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068973:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068974:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm SRR068987:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068988:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068989:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068990:GSM607735: Ler-WTxCol-WT_full-Endosperm AT2G13730.1 Arabidopsis thaliana 0.84 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G13760.1 Arabidopsis thaliana 0.51 Unknown SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT2G13790.1 Arabidopsis thaliana 0.30 somatic embryogenesis receptor-like kinase 4 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G13800.1 Arabidopsis thaliana 0.42 somatic embryogenesis receptor-like kinase 5 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G13851.1 Arabidopsis thaliana 0.72 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G13860.1 Arabidopsis thaliana 0.89 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G13910.1 Arabidopsis thaliana 0.56 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G13960.1 Arabidopsis thaliana 0.42 Homeodomain-like superfamily protein SRR364677:GFP sample SRR364678:nonGFP sample AT2G13960.2 Arabidopsis thaliana 0.34 Homeodomain-like superfamily protein SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT2G13975.1 Arabidopsis thaliana 0.35 transposable element gene SRR1652314:atrtf2-1 SRR1652315:prp8-7 AT2G14010.1 Arabidopsis thaliana 0.38 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT2G14070.1 Arabidopsis thaliana 0.40 wound-responsive protein-related SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT2G14100.1 Arabidopsis thaliana 0.44 cytochrome P450, family 705, subfamily A, polypeptide 13 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G14115.1 Arabidopsis thaliana 0.53 other RNA SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G14130.1 Arabidopsis thaliana 0.31 transposable element gene SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT2G14160.1 Arabidopsis thaliana 0.54 RNA-binding (RRM/RBD/RNP motifs) family protein SRR1257404:GSM1371366: infected Col0 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G14206.1 Arabidopsis thaliana 0.51 Unknown SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G14220.1 Arabidopsis thaliana 0.34 transposable element gene SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G14289.1 Arabidopsis thaliana 1.00 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G14290.1 Arabidopsis thaliana 0.54 F-box family protein with a domain of unknown function (DUF295) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G14405.1 Arabidopsis thaliana 0.53 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G14475.1 Arabidopsis thaliana 0.56 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G14692.1 Arabidopsis thaliana 0.32 Unknown SRR520237:GSM958257: WT-RNA-1; Arabidopsis thaliana; RNA-Seq SRR520244:GSM958264: pif145-RNA-2; Arabidopsis thaliana; RNA-Seq AT2G14750.1 Arabidopsis thaliana 0.53 APS kinase ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT2G14810.1 Arabidopsis thaliana 0.96 Unknown SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G14820.1 Arabidopsis thaliana 0.54 Phototropic-responsive NPH3 family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G14830.2 Arabidopsis thaliana 0.31 Regulator of Vps4 activity in the MVB pathway protein SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G14860.1 Arabidopsis thaliana 0.45 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G14890.2 Arabidopsis thaliana 0.31 arabinogalactan protein 9 ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G14920.1 Arabidopsis thaliana 0.56 sulfotransferase 4A ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G14960.1 Arabidopsis thaliana 0.40 Auxin-responsive GH3 family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G15015.1 Arabidopsis thaliana 0.72 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G15029.1 Arabidopsis thaliana 0.82 Unknown SRR1105829:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 AT2G15090.1 Arabidopsis thaliana 0.57 3-ketoacyl-CoA synthase 8 SRR1652314:atrtf2-1 AT2G15120.1 Arabidopsis thaliana 0.52 Unknown SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G15130.1 Arabidopsis thaliana 0.59 Plant basic secretory protein (BSP) family protein SRR1578863:GSM1507903: Te O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578864:GSM1507904: Te O3 rep2; Arabidopsis thaliana; RNA-Seq SRR1578865:GSM1507905: Te O3 rep3; Arabidopsis thaliana; RNA-Seq SRR1578869:GSM1507909: CT101 O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578870:GSM1507910: CT101 O3 rep2; Arabidopsis thaliana; RNA-Seq SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G15130.2 Arabidopsis thaliana 0.51 Plant basic secretory protein (BSP) family protein SRR1578863:GSM1507903: Te O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578864:GSM1507904: Te O3 rep2; Arabidopsis thaliana; RNA-Seq SRR1578865:GSM1507905: Te O3 rep3; Arabidopsis thaliana; RNA-Seq SRR1578869:GSM1507909: CT101 O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578870:GSM1507910: CT101 O3 rep2; Arabidopsis thaliana; RNA-Seq SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G15271.1 Arabidopsis thaliana 0.90 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G15318.1 Arabidopsis thaliana 0.50 Unknown SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT2G15380.1 Arabidopsis thaliana 0.38 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT2G15400.2 Arabidopsis thaliana 0.31 DNA-directed RNA polymerase family protein SRR1105591:GSM1303964: CL37_7-8_C; Arabidopsis thaliana; RNA-Seq AT2G15480.1 Arabidopsis thaliana 0.64 UDP-glucosyl transferase 73B5 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G15490.1 Arabidopsis thaliana 0.33 UDP-glycosyltransferase 73B4 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G15530.2 Arabidopsis thaliana 0.45 RING/U-box superfamily protein SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm AT2G15570.2 Arabidopsis thaliana 0.43 Thioredoxin superfamily protein SRR392133:GSM852823: mRNA-seq in fcl, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT2G15580.2 Arabidopsis thaliana 0.40 RING/U-box superfamily protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT2G15590.1 Arabidopsis thaliana 0.46 Protein of unknown function (DUF1685) SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G15710.1 Arabidopsis thaliana 0.42 TRAF-like family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G15790.1 Arabidopsis thaliana 0.43 peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT2G15880.1 Arabidopsis thaliana 0.75 Leucine-rich repeat (LRR) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G15910.1 Arabidopsis thaliana 0.46 CSL zinc finger domain-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G16005.1 Arabidopsis thaliana 0.36 MD-2-related lipid recognition domain-containing protein SRR1046920:GSM1287178: Ler-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT2G16015.1 Arabidopsis thaliana 0.88 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G16016.1 Arabidopsis thaliana 0.53 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G16018.1 Arabidopsis thaliana 0.39 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G16020.1 Arabidopsis thaliana 0.46 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G16030.1 Arabidopsis thaliana 0.62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G16050.1 Arabidopsis thaliana 0.33 Cysteine/Histidine-rich C1 domain family protein SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT2G16145.1 Arabidopsis thaliana 0.48 MIR416; miRNA ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT2G16220.1 Arabidopsis thaliana 0.44 F-box and associated interaction domains-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G16225.1 Arabidopsis thaliana 0.49 Maternally expressed gene (MEG) family protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT2G16240.1 Arabidopsis thaliana 0.43 pre-tRNA SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR499987:sig6 replicate 1 SRR499988:gun1/sig6 replicate 1 SRR499989:gun1/sig6 replicate 2 AT2G16250.1 Arabidopsis thaliana 0.31 Leucine-rich repeat protein kinase family protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT2G16290.1 Arabidopsis thaliana 0.65 F-box family protein with a domain of unknown function (DUF295) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G16367.1 Arabidopsis thaliana 0.34 Unknown SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G16370.1 Arabidopsis thaliana 0.43 thymidylate synthase 1 SRR1652314:atrtf2-1 AT2G16385.1 Arabidopsis thaliana 0.33 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G16430.2 Arabidopsis thaliana 0.37 purple acid phosphatase 10 SRR1652317:atrtf2-2Ho AT2G16450.1 Arabidopsis thaliana 0.58 F-box and associated interaction domains-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G16460.2 Arabidopsis thaliana 0.36 Protein of unknown function (DUF1640) SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G16490.1 Arabidopsis thaliana 0.41 XH domain-containing protein SRR314818:GSM764082: Can_0_floral_bud_validation_rep1 AT2G16530.2 Arabidopsis thaliana 0.32 3-oxo-5-alpha-steroid 4-dehydrogenase family protein SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G16535.1 Arabidopsis thaliana 0.44 Maternally expressed gene (MEG) family protein SRR800753:GSM1111913: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G16668.1 Arabidopsis thaliana 0.96 Unknown SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT2G16710.2 Arabidopsis thaliana 0.62 Iron-sulphur cluster biosynthesis family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G16730.1 Arabidopsis thaliana 0.84 glycosyl hydrolase family 35 protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G16790.1 Arabidopsis thaliana 0.58 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G16790.2 Arabidopsis thaliana 0.37 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G16881.1 Arabidopsis thaliana 0.84 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G16930.3 Arabidopsis thaliana 0.35 Ribosomal protein L27 family protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G16970.1 Arabidopsis thaliana 0.42 Major facilitator superfamily protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G17010.1 Arabidopsis thaliana 0.56 Mechanosensitive ion channel family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G17020.1 Arabidopsis thaliana 0.51 F-box/RNI-like superfamily protein SRR1652314:atrtf2-1 AT2G17030.1 Arabidopsis thaliana 0.32 F-box family protein with a domain of unknown function (DUF295) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G17055.1 Arabidopsis thaliana 0.41 Toll-Interleukin-Resistance (TIR) domain family protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT2G17064.1 Arabidopsis thaliana 0.48 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G17070.1 Arabidopsis thaliana 0.40 Arabidopsis protein of unknown function (DUF241) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G17080.1 Arabidopsis thaliana 0.34 Arabidopsis protein of unknown function (DUF241) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G17130.1 Arabidopsis thaliana 0.34 isocitrate dehydrogenase subunit 2 SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G17230.1 Arabidopsis thaliana 0.35 EXORDIUM like 5 SRR1652314:atrtf2-1 AT2G17295.1 Arabidopsis thaliana 0.40 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G17440.1 Arabidopsis thaliana 0.42 plant intracellular ras group-related LRR 5 SRR364677:GFP sample AT2G17480.1 Arabidopsis thaliana 0.35 Seven transmembrane MLO family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G17500.4 Arabidopsis thaliana 0.31 Auxin efflux carrier family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G17530.1 Arabidopsis thaliana 0.44 Protein kinase superfamily protein SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G17530.3 Arabidopsis thaliana 0.41 Protein kinase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G17540.2 Arabidopsis thaliana 0.66 Unknown SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G17556.1 Arabidopsis thaliana 0.91 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT2G17590.1 Arabidopsis thaliana 0.50 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G17660.1 Arabidopsis thaliana 0.43 RPM1-interacting protein 4 (RIN4) family protein SRR364677:GFP sample AT2G17695.3 Arabidopsis thaliana 0.39 Unknown SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT2G17700.1 Arabidopsis thaliana 0.37 ACT-like protein tyrosine kinase family protein SRR514998:GSM736442: At_mRNASeq AT2G17720.1 Arabidopsis thaliana 0.32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G17723.1 Arabidopsis thaliana 0.34 Defensin-like (DEFL) family protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G17730.1 Arabidopsis thaliana 0.41 NEP-interacting protein 2 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G17770.2 Arabidopsis thaliana 0.31 basic region/leucine zipper motif 27 ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT2G17780.1 Arabidopsis thaliana 0.39 PLAC8 family protein SRR1652314:atrtf2-1 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G17850.1 Arabidopsis thaliana 0.41 Rhodanese/Cell cycle control phosphatase superfamily protein SRR345564:GSM798298: mRNASeq_skip_rep2 SRR1019442:GSM1252268: iaa3 + BR RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019443:GSM1252269: iaa3 + BR RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT2G17890.1 Arabidopsis thaliana 0.81 calcium-dependent protein kinase 16 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G18060.1 Arabidopsis thaliana 0.33 vascular related NAC-domain protein 1 SRR1144842:be1-3 7 days on CIM SRR1144845:be1-3 2 days on SIM AT2G18080.1 Arabidopsis thaliana 0.41 Serine carboxypeptidase S28 family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G18120.1 Arabidopsis thaliana 0.58 SHI-related sequence 4 SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT2G18180.1 Arabidopsis thaliana 0.89 Sec14p-like phosphatidylinositol transfer family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G18190.1 Arabidopsis thaliana 0.46 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT2G18245.1 Arabidopsis thaliana 0.31 alpha/beta-Hydrolases superfamily protein SRR1652314:atrtf2-1 AT2G18300.2 Arabidopsis thaliana 0.78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1044947:GSM1281705: HBI1-Ox 1#; Arabidopsis thaliana; RNA-Seq SRR1044948:GSM1281706: HBI1-Ox 2#; Arabidopsis thaliana; RNA-Seq AT2G18320.1 Arabidopsis thaliana 0.63 F-box associated ubiquitination effector family protein SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G18340.2 Arabidopsis thaliana 0.34 late embryogenesis abundant domain-containing protein / LEA domain-containing protein ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G18360.1 Arabidopsis thaliana 0.46 alpha/beta-Hydrolases superfamily protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G18370.1 Arabidopsis thaliana 0.32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G18380.1 Arabidopsis thaliana 0.44 GATA transcription factor 20 SRR1144843:WS 7 days on CIM AT2G18450.1 Arabidopsis thaliana 0.75 succinate dehydrogenase 1-2 SRR364677:GFP sample AT2G18460.1 Arabidopsis thaliana 0.31 like COV 3 SRR1046929:GSM1287187: Rsch-4 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046930:GSM1287188: Rsch-4 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G18465.1 Arabidopsis thaliana 0.36 Chaperone DnaJ-domain superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G18470.1 Arabidopsis thaliana 0.93 roline-rich extensin-like receptor kinase 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G18620.1 Arabidopsis thaliana 0.32 Terpenoid synthases superfamily protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 AT2G18650.1 Arabidopsis thaliana 0.49 RING/U-box superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G18750.1 Arabidopsis thaliana 0.45 Calmodulin-binding protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT2G18750.3 Arabidopsis thaliana 0.32 Calmodulin-binding protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G18890.2 Arabidopsis thaliana 0.37 Protein kinase superfamily protein SRR609410:RNAseq data from loss of function mutant of BON1 in Ws AT2G18930.1 Arabidopsis thaliana 0.30 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G18980.1 Arabidopsis thaliana 0.66 Peroxidase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G19000.1 Arabidopsis thaliana 0.81 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19010.1 Arabidopsis thaliana 0.38 GDSL-like Lipase/Acylhydrolase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19020.1 Arabidopsis thaliana 0.31 ralf-like 10 SRR1207199:GSM1359151: 35S:NGA 1; Arabidopsis thaliana; RNA-Seq AT2G19030.1 Arabidopsis thaliana 0.50 ralf-like 11 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19045.1 Arabidopsis thaliana 0.66 RALF-like 13 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19050.1 Arabidopsis thaliana 0.85 GDSL-like Lipase/Acylhydrolase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19060.1 Arabidopsis thaliana 0.54 SGNH hydrolase-type esterase superfamily protein SRR364677:GFP sample AT2G19300.1 Arabidopsis thaliana 0.78 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT2G19310.1 Arabidopsis thaliana 0.47 HSP20-like chaperones superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT2G19330.1 Arabidopsis thaliana 0.31 plant intracellular ras group-related LRR 6 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G19340.1 Arabidopsis thaliana 0.51 Oligosaccharyltransferase complex/magnesium transporter family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G19340.2 Arabidopsis thaliana 0.31 Oligosaccharyltransferase complex/magnesium transporter family protein SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G19400.1 Arabidopsis thaliana 0.53 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19425.1 Arabidopsis thaliana 0.40 MIR156G; miRNA SRR974750:GSM1226366: mRNASS-Dark_2; Arabidopsis thaliana; RNA-Seq AT2G19450.1 Arabidopsis thaliana 0.67 membrane bound O-acyl transferase (MBOAT) family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G19460.1 Arabidopsis thaliana 0.62 Protein of unknown function (DUF3511) SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G19620.1 Arabidopsis thaliana 0.35 N-MYC downregulated-like 3 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G19620.2 Arabidopsis thaliana 0.48 N-MYC downregulated-like 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G19640.2 Arabidopsis thaliana 0.39 ASH1-related protein 2 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G19690.1 Arabidopsis thaliana 0.80 phospholipase A2-beta SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19690.2 Arabidopsis thaliana 0.67 phospholipase A2-beta SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19710.1 Arabidopsis thaliana 0.39 Regulator of Vps4 activity in the MVB pathway protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G19720.1 Arabidopsis thaliana 0.43 ribosomal protein S15A B ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G19730.3 Arabidopsis thaliana 0.71 Ribosomal L28e protein family SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G19770.1 Arabidopsis thaliana 0.45 profilin 5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19796.1 Arabidopsis thaliana 0.33 other RNA SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G19803.1 Arabidopsis thaliana 0.54 transposable element gene SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G19810.1 Arabidopsis thaliana 0.32 CCCH-type zinc finger family protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT2G19880.2 Arabidopsis thaliana 0.39 Nucleotide-diphospho-sugar transferases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G19930.1 Arabidopsis thaliana 0.35 RNA-dependent RNA polymerase family protein SRR1144843:WS 7 days on CIM AT2G19960.1 Arabidopsis thaliana 0.46 hAT family dimerisation domain SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT2G19970.1 Arabidopsis thaliana 0.48 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein SRR1144842:be1-3 7 days on CIM AT2G19990.1 Arabidopsis thaliana 0.68 pathogenesis-related protein-1-like SRR1144842:be1-3 7 days on CIM AT2G20130.1 Arabidopsis thaliana 0.52 like COV 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G20142.1 Arabidopsis thaliana 0.73 Toll-Interleukin-Resistance (TIR) domain family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G20150.1 Arabidopsis thaliana 0.74 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G20170.2 Arabidopsis thaliana 0.64 Protein of Unknown Function (DUF239) SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G20170.3 Arabidopsis thaliana 0.50 Protein of Unknown Function (DUF239) SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G20260.1 Arabidopsis thaliana 0.33 photosystem I subunit E-2 SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518044:GSM954621: H2AZ_WT_3_RNA; Arabidopsis thaliana; RNA-Seq ERR229831:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229833:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229858:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G20290.1 Arabidopsis thaliana 0.61 myosin-like protein XIG SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G20320.1 Arabidopsis thaliana 0.67 DENN (AEX-3) domain-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G20340.1 Arabidopsis thaliana 0.40 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein SRR1046862:GSM1287127: Arabidopsis thaliana Ler-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G20350.1 Arabidopsis thaliana 0.74 Integrase-type DNA-binding superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G20430.1 Arabidopsis thaliana 0.47 ROP-interactive CRIB motif-containing protein 6 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G20440.1 Arabidopsis thaliana 0.49 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G20440.2 Arabidopsis thaliana 0.34 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G20550.1 Arabidopsis thaliana 0.32 HSP40/DnaJ peptide-binding protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G20555.1 Arabidopsis thaliana 0.80 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT2G20597.1 Arabidopsis thaliana 0.62 Plant thionin family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G20600.1 Arabidopsis thaliana 0.37 transposable element gene SRR501600:GSM938348: met1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT2G20618.1 Arabidopsis thaliana 0.35 Plant thionin family protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G20620.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF626) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G20625.1 Arabidopsis thaliana 0.30 Protein of unknown function (DUF626) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G20630.2 Arabidopsis thaliana 0.61 PP2C induced by AVRRPM1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G20650.1 Arabidopsis thaliana 0.60 RING/U-box superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G20650.2 Arabidopsis thaliana 0.31 RING/U-box superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G20720.1 Arabidopsis thaliana 0.78 Pentatricopeptide repeat (PPR) superfamily protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT2G20721.1 Arabidopsis thaliana 0.33 snoRNA SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G20723.1 Arabidopsis thaliana 0.63 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G20724.1 Arabidopsis thaliana 0.81 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G20740.1 Arabidopsis thaliana 0.37 Tetraspanin family protein SRR1652314:atrtf2-1 AT2G20750.1 Arabidopsis thaliana 0.54 expansin B1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G20760.1 Arabidopsis thaliana 0.33 Clathrin light chain protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G20790.1 Arabidopsis thaliana 0.48 clathrin adaptor complexes medium subunit family protein SRR1652314:atrtf2-1 AT2G20800.1 Arabidopsis thaliana 0.51 NAD(P)H dehydrogenase B4 SRR1144842:be1-3 7 days on CIM AT2G20815.2 Arabidopsis thaliana 0.33 Family of unknown function (DUF566) SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G20840.1 Arabidopsis thaliana 0.43 Secretory carrier membrane protein (SCAMP) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G20850.1 Arabidopsis thaliana 0.57 STRUBBELIG-receptor family 1 SRR1652314:atrtf2-1 AT2G20940.1 Arabidopsis thaliana 0.38 Protein of unknown function (DUF1279) SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G20950.2 Arabidopsis thaliana 0.34 Arabidopsis phospholipase-like protein (PEARLI 4) family SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G20950.3 Arabidopsis thaliana 0.63 Arabidopsis phospholipase-like protein (PEARLI 4) family SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G20970.2 Arabidopsis thaliana 0.64 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G20980.1 Arabidopsis thaliana 0.39 minichromosome maintenance 10 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G20990.2 Arabidopsis thaliana 0.32 synaptotagmin A ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G20990.3 Arabidopsis thaliana 0.33 synaptotagmin A SRR392132:GSM852822: mRNA-seq in fcl, technical replicate 3; Arabidopsis thaliana; RNA-Seq AT2G20993.1 Arabidopsis thaliana 0.32 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G21045.1 Arabidopsis thaliana 0.36 Rhodanese/Cell cycle control phosphatase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G21080.1 Arabidopsis thaliana 0.59 Unknown SRR826412:Sample Control BR5 AT2G21120.1 Arabidopsis thaliana 0.49 Protein of unknown function (DUF803) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G21172.1 Arabidopsis thaliana 0.43 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT2G21187.2 Arabidopsis thaliana 0.45 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G21330.2 Arabidopsis thaliana 0.37 fructose-bisphosphate aldolase 1 SRR1652314:atrtf2-1 AT2G21330.3 Arabidopsis thaliana 0.45 fructose-bisphosphate aldolase 1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G21350.1 Arabidopsis thaliana 0.32 RNA-binding CRS1 / YhbY (CRM) domain protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G21480.1 Arabidopsis thaliana 0.86 Malectin/receptor-like protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G21500.2 Arabidopsis thaliana 0.46 RING/U-box superfamily protein SRR1005389:GSM1242378: cmt2_mRNA_rep1; Arabidopsis thaliana; RNA-Seq AT2G21540.2 Arabidopsis thaliana 0.85 SEC14-like 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G21590.2 Arabidopsis thaliana 0.54 Glucose-1-phosphate adenylyltransferase family protein SRR314818:GSM764082: Can_0_floral_bud_validation_rep1 SRR826412:Sample Control BR5 AT2G21610.1 Arabidopsis thaliana 0.54 pectinesterase 11 SRR364678:nonGFP sample AT2G21640.1 Arabidopsis thaliana 0.40 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G21655.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF784) SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq SRR388669:GSM847338: WT-Flower-RNAseq-2; Arabidopsis thaliana; RNA-Seq AT2G21660.2 Arabidopsis thaliana 0.35 cold, circadian rhythm, and rna binding 2 SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT2G21680.1 Arabidopsis thaliana 0.46 Galactose oxidase/kelch repeat superfamily protein SRR515323:GSM951352: RVE8:GR_mock_1; Arabidopsis thaliana; RNA-Seq SRR515324:GSM951352: RVE8:GR_mock_1; Arabidopsis thaliana; RNA-Seq SRR515325:GSM951353: RVE8:GR_mock_2; Arabidopsis thaliana; RNA-Seq SRR515326:GSM951353: RVE8:GR_mock_2; Arabidopsis thaliana; RNA-Seq SRR515327:GSM951354: RVE8:GR_mock_3; Arabidopsis thaliana; RNA-Seq SRR515328:GSM951354: RVE8:GR_mock_3; Arabidopsis thaliana; RNA-Seq SRR515317:GSM951349: RVE8:GR_DEX_1; Arabidopsis thaliana; RNA-Seq SRR515318:GSM951349: RVE8:GR_DEX_1; Arabidopsis thaliana; RNA-Seq SRR515319:GSM951350: RVE8:GR_DEX_2; Arabidopsis thaliana; RNA-Seq SRR515320:GSM951350: RVE8:GR_DEX_2; Arabidopsis thaliana; RNA-Seq SRR515321:GSM951351: RVE8:GR_DEX_3; Arabidopsis thaliana; RNA-Seq SRR515322:GSM951351: RVE8:GR_DEX_3; Arabidopsis thaliana; RNA-Seq AT2G21740.1 Arabidopsis thaliana 0.37 Protein of unknown function (DUF1278) SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G21870.2 Arabidopsis thaliana 0.58 copper ion binding;cobalt ion binding;zinc ion binding SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G21880.1 Arabidopsis thaliana 0.65 RAB GTPase homolog 7A ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G21895.1 Arabidopsis thaliana 0.37 Unknown SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G21900.1 Arabidopsis thaliana 0.41 WRKY DNA-binding protein 59 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G21940.3 Arabidopsis thaliana 0.42 shikimate kinase 1 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT2G21940.5 Arabidopsis thaliana 0.30 shikimate kinase 1 SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT2G21990.1 Arabidopsis thaliana 0.85 Protein of unknown function, DUF617 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G22010.1 Arabidopsis thaliana 0.40 related to KPC1 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT2G22030.1 Arabidopsis thaliana 0.43 Galactose oxidase/kelch repeat superfamily protein SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G22050.2 Arabidopsis thaliana 0.40 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G22055.1 Arabidopsis thaliana 0.89 RALF-like 15 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G22080.1 Arabidopsis thaliana 0.45 Unknown SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT2G22088.1 Arabidopsis thaliana 0.73 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G22090.1 Arabidopsis thaliana 0.49 RNA-binding (RRM/RBD/RNP motifs) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G22155.1 Arabidopsis thaliana 0.36 Unknown SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT2G22180.1 Arabidopsis thaliana 0.89 hydroxyproline-rich glycoprotein family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G22201.1 Arabidopsis thaliana 0.39 Unknown SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G22240.2 Arabidopsis thaliana 0.36 myo-inositol-1-phosphate synthase 2 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G22241.1 Arabidopsis thaliana 0.34 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G22250.1 Arabidopsis thaliana 0.44 aspartate aminotransferase SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT2G22280.1 Arabidopsis thaliana 0.35 pre-tRNA SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq AT2G22290.1 Arabidopsis thaliana 0.73 RAB GTPase homolog H1D SRR364677:GFP sample AT2G22300.1 Arabidopsis thaliana 0.59 signal responsive 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G22320.1 Arabidopsis thaliana 0.38 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G22340.1 Arabidopsis thaliana 0.91 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G22345.1 Arabidopsis thaliana 0.56 Cysteine-rich protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm AT2G22390.1 Arabidopsis thaliana 0.35 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G22420.1 Arabidopsis thaliana 0.36 Peroxidase superfamily protein SRR1144845:be1-3 2 days on SIM AT2G22425.2 Arabidopsis thaliana 0.36 Microsomal signal peptidase 12 kDa subunit (SPC12) SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT2G22426.1 Arabidopsis thaliana 0.85 Unknown SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G22450.1 Arabidopsis thaliana 0.38 riboflavin biosynthesis protein, putative SRR1652314:atrtf2-1 AT2G22470.1 Arabidopsis thaliana 0.52 arabinogalactan protein 2 SRR364677:GFP sample AT2G22475.1 Arabidopsis thaliana 0.37 GRAM domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G22496.1 Arabidopsis thaliana 0.60 MIR779a; miRNA SRR1257392:GSM1371354: infected Col0 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G22590.1 Arabidopsis thaliana 0.38 UDP-Glycosyltransferase superfamily protein SRR1046924:GSM1287182: No-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT2G22620.2 Arabidopsis thaliana 0.41 Rhamnogalacturonate lyase family protein SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT2G22650.1 Arabidopsis thaliana 0.51 FAD-dependent oxidoreductase family protein SRR1652314:atrtf2-1 AT2G22668.1 Arabidopsis thaliana 0.41 MIR405A; miRNA SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT2G22680.1 Arabidopsis thaliana 0.65 Zinc finger (C3HC4-type RING finger) family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G22720.2 Arabidopsis thaliana 0.49 SPT2 chromatin protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G22800.1 Arabidopsis thaliana 0.56 Homeobox-leucine zipper protein family SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G22802.1 Arabidopsis thaliana 1.00 Unknown SRR974750:GSM1226366: mRNASS-Dark_2; Arabidopsis thaliana; RNA-Seq AT2G22807.1 Arabidopsis thaliana 0.41 Defensin-like (DEFL) family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G22820.1 Arabidopsis thaliana 0.63 Unknown SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G22830.1 Arabidopsis thaliana 0.32 squalene epoxidase 2 SRR1652314:atrtf2-1 AT2G22850.2 Arabidopsis thaliana 0.52 basic leucine-zipper 6 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G22905.1 Arabidopsis thaliana 0.39 Expressed protein SRR1578854:GSM1507894: C24 ctrl rep1; Arabidopsis thaliana; RNA-Seq AT2G22970.1 Arabidopsis thaliana 0.42 serine carboxypeptidase-like 11 SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G22980.4 Arabidopsis thaliana 0.35 serine carboxypeptidase-like 13 SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT2G22990.3 Arabidopsis thaliana 0.54 sinapoylglucose 1 SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT2G22990.4 Arabidopsis thaliana 0.38 sinapoylglucose 1 SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT2G22990.6 Arabidopsis thaliana 0.34 sinapoylglucose 1 SRR1652314:atrtf2-1 AT2G23030.1 Arabidopsis thaliana 0.39 SNF1-related protein kinase 2.9 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G23067.1 Arabidopsis thaliana 0.37 Putative membrane lipoprotein ERR351333:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G23093.1 Arabidopsis thaliana 0.42 Major facilitator superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G23100.1 Arabidopsis thaliana 0.31 Cysteine/Histidine-rich C1 domain family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G23110.2 Arabidopsis thaliana 0.35 Late embryogenesis abundant protein, group 6 SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT2G23118.1 Arabidopsis thaliana 0.43 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT2G23130.2 Arabidopsis thaliana 0.31 arabinogalactan protein 17 SRR392126:GSM852816: mRNA-seq in flc, technical replicate 1; Arabidopsis thaliana; RNA-Seq SRR392127:GSM852817: mRNA-seq in flc, technical replicate 2; Arabidopsis thaliana; RNA-Seq SRR392128:GSM852818: mRNA-seq in flc, technical replicate 3; Arabidopsis thaliana; RNA-Seq SRR392129:GSM852819: mRNA-seq in flc, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT2G23142.1 Arabidopsis thaliana 0.39 Plant self-incompatibility protein S1 family SRR1046871:GSM1287136: Arabidopsis thaliana Oy-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G23149.1 Arabidopsis thaliana 0.45 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT2G23170.1 Arabidopsis thaliana 0.37 Auxin-responsive GH3 family protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT2G23171.1 Arabidopsis thaliana 0.63 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT2G23180.1 Arabidopsis thaliana 0.33 cytochrome P450, family 96, subfamily A, polypeptide 1 SRR1058111:GSM1297913: at-seed-ler_wt_x_col_wt 2; Arabidopsis thaliana; RNA-Seq AT2G23190.1 Arabidopsis thaliana 0.34 cytochrome P450, family 81, subfamily D, polypeptide 7 SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G23220.1 Arabidopsis thaliana 0.49 cytochrome P450, family 81, subfamily D, polypeptide 6 ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G23270.1 Arabidopsis thaliana 0.31 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT2G23347.1 Arabidopsis thaliana 0.45 MIR844a; miRNA ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G23440.1 Arabidopsis thaliana 0.62 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G23450.1 Arabidopsis thaliana 0.48 Protein kinase superfamily protein SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT2G23450.2 Arabidopsis thaliana 0.34 Protein kinase superfamily protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT2G23460.1 Arabidopsis thaliana 0.42 extra-large G-protein 1 SRR1652314:atrtf2-1 AT2G23580.2 Arabidopsis thaliana 0.35 methyl esterase 4 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G23660.1 Arabidopsis thaliana 0.70 LOB domain-containing protein 10 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G23660.2 Arabidopsis thaliana 0.35 LOB domain-containing protein 10 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G23673.1 Arabidopsis thaliana 0.46 Unknown SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT2G23680.2 Arabidopsis thaliana 0.62 Cold acclimation protein WCOR413 family SRR1257397:GSM1371359: mock T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G23760.1 Arabidopsis thaliana 0.33 BEL1-like homeodomain 4 SRR446044:Vir.12h.B AT2G23760.2 Arabidopsis thaliana 0.34 BEL1-like homeodomain 4 SRR446044:Vir.12h.B AT2G23760.3 Arabidopsis thaliana 0.32 BEL1-like homeodomain 4 SRR949990:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) AT2G23780.1 Arabidopsis thaliana 0.42 RING/U-box superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G23808.1 Arabidopsis thaliana 0.42 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT2G23820.1 Arabidopsis thaliana 0.45 Metal-dependent phosphohydrolase SRR1652314:atrtf2-1 AT2G23830.1 Arabidopsis thaliana 0.35 PapD-like superfamily protein SRR1578857:GSM1507897: C24 O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G23834.1 Arabidopsis thaliana 0.77 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G23900.1 Arabidopsis thaliana 0.89 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G23910.1 Arabidopsis thaliana 0.42 NAD(P)-binding Rossmann-fold superfamily protein SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT2G23920.1 Arabidopsis thaliana 0.90 Unknown ERR588049:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G23940.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF788) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G23970.1 Arabidopsis thaliana 0.66 Class I glutamine amidotransferase-like superfamily protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G23990.1 Arabidopsis thaliana 0.45 early nodulin-like protein 11 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G24103.1 Arabidopsis thaliana 0.50 MIR831a; miRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq AT2G24160.1 Arabidopsis thaliana 0.30 Unknown SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT2G24190.1 Arabidopsis thaliana 0.32 NAD(P)-binding Rossmann-fold superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G24200.2 Arabidopsis thaliana 0.34 Cytosol aminopeptidase family protein SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G24240.1 Arabidopsis thaliana 0.42 BTB/POZ domain with WD40/YVTN repeat-like protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G24260.1 Arabidopsis thaliana 0.39 LJRHL1-like 1 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G24285.1 Arabidopsis thaliana 0.50 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G24300.2 Arabidopsis thaliana 0.46 Calmodulin-binding protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G24310.1 Arabidopsis thaliana 0.35 Unknown SRR1144843:WS 7 days on CIM AT2G24320.1 Arabidopsis thaliana 0.71 alpha/beta-Hydrolases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G24360.1 Arabidopsis thaliana 0.32 Protein kinase superfamily protein SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT2G24370.1 Arabidopsis thaliana 0.91 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G24400.1 Arabidopsis thaliana 0.88 SAUR-like auxin-responsive protein family ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G24410.1 Arabidopsis thaliana 0.71 Unknown SRR364677:GFP sample AT2G24430.2 Arabidopsis thaliana 0.36 NAC domain containing protein 38 ERR588043:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G24450.1 Arabidopsis thaliana 0.95 FASCICLIN-like arabinogalactan protein 3 precursor SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G24490.1 Arabidopsis thaliana 0.32 replicon protein A2 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G24490.2 Arabidopsis thaliana 0.40 replicon protein A2 SRR364678:nonGFP sample AT2G24500.1 Arabidopsis thaliana 0.76 Zinc finger protein 622 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G24513.1 Arabidopsis thaliana 0.33 Unknown SRR1179983:GSM1337738: Arabidopsis thaliana Sf-2 X Can-0 seedling, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT2G24550.1 Arabidopsis thaliana 0.42 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G24570.1 Arabidopsis thaliana 0.42 WRKY DNA-binding protein 17 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT2G24650.1 Arabidopsis thaliana 0.34 DNA binding;DNA binding;sequence-specific DNA binding transcription factors SRR1652314:atrtf2-1 AT2G24692.1 Arabidopsis thaliana 0.52 Unknown SRR364677:GFP sample AT2G24755.3 Arabidopsis thaliana 0.41 other RNA SRR584116:GSM1017157: NMD_UPF1_R1; Arabidopsis thaliana; RNA-Seq AT2G24765.1 Arabidopsis thaliana 0.45 ADP-ribosylation factor 3 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G24790.2 Arabidopsis thaliana 0.37 CONSTANS-like 3 SRR446043:Vir.12h.A AT2G24791.1 Arabidopsis thaliana 0.78 Unknown SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G24810.1 Arabidopsis thaliana 0.47 Pathogenesis-related thaumatin superfamily protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G24834.1 Arabidopsis thaliana 0.93 Unknown SRR364677:GFP sample AT2G24840.1 Arabidopsis thaliana 0.45 AGAMOUS-like 61 SRR364677:GFP sample ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G24880.1 Arabidopsis thaliana 0.53 Plant self-incompatibility protein S1 family SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G24915.1 Arabidopsis thaliana 0.66 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G24920.1 Arabidopsis thaliana 0.72 transposable element gene SRR1046859:GSM1287124: Arabidopsis thaliana Kn-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046861:GSM1287126: Arabidopsis thaliana Kn-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G25090.1 Arabidopsis thaliana 0.36 CBL-interacting protein kinase 16 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT2G25140.1 Arabidopsis thaliana 0.34 casein lytic proteinase B4 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1004829:tanorexia-1 Transcriptome Profiling E2 High-Light 30 minutes Replicate B AT2G25240.1 Arabidopsis thaliana 0.53 Serine protease inhibitor (SERPIN) family protein SRR364677:GFP sample AT2G25260.1 Arabidopsis thaliana 0.57 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G25305.1 Arabidopsis thaliana 0.33 Putative membrane lipoprotein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT2G25320.1 Arabidopsis thaliana 0.33 TRAF-like family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G25400.1 Arabidopsis thaliana 0.34 pre-tRNA SRR671946:GSM1077432: Root_polyA_KCl_Control_rep1; Arabidopsis thaliana; RNA-Seq SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq SRR671949:GSM1077435: Root_polyA_KNO3_Treatment_rep2; Arabidopsis thaliana; RNA-Seq AT2G25410.1 Arabidopsis thaliana 0.37 RING/U-box superfamily protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT2G25440.1 Arabidopsis thaliana 0.47 receptor like protein 20 SRR515180:5dpi Pst Col-0, ddc control, mRNA-Seq, run 1, Bioreplicate 1 SRR515181:5dpi Pst Col-0, ddc control, mRNA-Seq, run 1, Bioreplicate 1 AT2G25482.1 Arabidopsis thaliana 0.35 Protein of unknown function (DUF784) SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq AT2G25510.1 Arabidopsis thaliana 0.33 Unknown SRR1019222:GSM1252087: edm2-4 RNA-seq; Arabidopsis thaliana; RNA-Seq SRR902026:GSM1165954: asi1-1_mRNA-Seq; Arabidopsis thaliana; RNA-Seq AT2G25510.2 Arabidopsis thaliana 0.36 Unknown SRR547533:GSM992673: 35S:SlHsfA3-6; Arabidopsis thaliana; RNA-Seq AT2G25560.1 Arabidopsis thaliana 0.54 DNAJ heat shock N-terminal domain-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G25600.1 Arabidopsis thaliana 0.91 Shaker pollen inward K+ channel SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G25605.1 Arabidopsis thaliana 0.33 Unknown SRR1652314:atrtf2-1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G25650.1 Arabidopsis thaliana 0.35 DNA-binding storekeeper protein-related transcriptional regulator SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm AT2G25660.1 Arabidopsis thaliana 0.30 embryo defective 2410 SRR1652314:atrtf2-1 AT2G25690.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF581) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G25690.2 Arabidopsis thaliana 0.50 Protein of unknown function (DUF581) SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G25697.1 Arabidopsis thaliana 0.34 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G25700.1 Arabidopsis thaliana 0.64 SKP1-like 3 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G25710.1 Arabidopsis thaliana 0.54 holocarboxylase synthase 1 SRR1652314:atrtf2-1 AT2G25720.1 Arabidopsis thaliana 0.33 Unknown SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G25730.2 Arabidopsis thaliana 0.41 Unknown SRR1652314:atrtf2-1 AT2G25735.1 Arabidopsis thaliana 0.55 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G25790.1 Arabidopsis thaliana 0.46 Leucine-rich receptor-like protein kinase family protein SRR1144842:be1-3 7 days on CIM AT2G25810.1 Arabidopsis thaliana 0.48 tonoplast intrinsic protein 4;1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G25850.2 Arabidopsis thaliana 0.43 poly(A) polymerase 2 SRR1652314:atrtf2-1 AT2G25880.1 Arabidopsis thaliana 0.61 ataurora2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G25880.2 Arabidopsis thaliana 0.43 ataurora2 SRR949991:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) AT2G25980.1 Arabidopsis thaliana 0.66 Mannose-binding lectin superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G25990.1 Arabidopsis thaliana 0.45 Unknown SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G26030.1 Arabidopsis thaliana 0.34 F-box/RNI-like/FBD-like domains-containing protein SRR1652314:atrtf2-1 AT2G26050.1 Arabidopsis thaliana 0.39 Protein of unknown function (DUF1644) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G26100.1 Arabidopsis thaliana 0.39 Galactosyltransferase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G26140.1 Arabidopsis thaliana 0.48 FTSH protease 4 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G26150.1 Arabidopsis thaliana 0.34 heat shock transcription factor A2 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT2G26150.2 Arabidopsis thaliana 0.55 heat shock transcription factor A2 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G26190.1 Arabidopsis thaliana 0.35 calmodulin-binding family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G26200.1 Arabidopsis thaliana 0.57 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR1652314:atrtf2-1 AT2G26267.1 Arabidopsis thaliana 0.32 Unknown SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G26280.1 Arabidopsis thaliana 0.33 CTC-interacting domain 7 SRR1652314:atrtf2-1 AT2G26290.1 Arabidopsis thaliana 0.50 root-specific kinase 1 SRR364677:GFP sample AT2G26340.2 Arabidopsis thaliana 0.53 Unknown SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT2G26400.1 Arabidopsis thaliana 0.62 acireductone dioxygenase 3 SRR1144845:be1-3 2 days on SIM AT2G26410.1 Arabidopsis thaliana 0.91 IQ-domain 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G26450.1 Arabidopsis thaliana 0.88 Plant invertase/pectin methylesterase inhibitor superfamily SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G26490.1 Arabidopsis thaliana 0.72 Transducin/WD40 repeat-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G26530.2 Arabidopsis thaliana 0.37 Protein of unknown function (DUF1645) SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G26540.1 Arabidopsis thaliana 0.32 uroporphyrinogen-III synthase family protein SRR1652314:atrtf2-1 AT2G26560.1 Arabidopsis thaliana 0.35 phospholipase A 2A SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G26580.1 Arabidopsis thaliana 0.39 plant-specific transcription factor YABBY family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G26590.2 Arabidopsis thaliana 0.45 regulatory particle non-ATPase 13 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G26700.1 Arabidopsis thaliana 0.34 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT2G26750.1 Arabidopsis thaliana 0.88 alpha/beta-Hydrolases superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G26810.3 Arabidopsis thaliana 0.57 Putative methyltransferase family protein SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT2G26830.1 Arabidopsis thaliana 0.33 Protein kinase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G26850.1 Arabidopsis thaliana 0.93 F-box family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G26900.1 Arabidopsis thaliana 0.43 Sodium Bile acid symporter family SRR1652314:atrtf2-1 AT2G26980.3 Arabidopsis thaliana 0.34 CBL-interacting protein kinase 3 SRR1652314:atrtf2-1 AT2G26980.5 Arabidopsis thaliana 0.31 CBL-interacting protein kinase 3 SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT2G27000.1 Arabidopsis thaliana 0.31 cytochrome P450, family 705, subfamily A, polypeptide 8 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G27010.1 Arabidopsis thaliana 0.35 cytochrome P450, family 705, subfamily A, polypeptide 9 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G27040.2 Arabidopsis thaliana 0.60 Argonaute family protein SRR1013921:responses to BL AT2G27050.1 Arabidopsis thaliana 0.32 ETHYLENE-INSENSITIVE3-like 1 SRR1652314:atrtf2-1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G27110.2 Arabidopsis thaliana 0.31 FAR1-related sequence 3 SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G27145.1 Arabidopsis thaliana 0.61 low-molecular-weight cysteine-rich 9 SRR314818:GSM764082: Can_0_floral_bud_validation_rep1 AT2G27170.2 Arabidopsis thaliana 0.34 Structural maintenance of chromosomes (SMC) family protein SRR1144843:WS 7 days on CIM AT2G27180.1 Arabidopsis thaliana 0.94 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G27210.1 Arabidopsis thaliana 0.37 BRI1 suppressor 1 (BSU1)-like 3 SRR1652314:atrtf2-1 AT2G27250.3 Arabidopsis thaliana 0.42 CLAVATA3 ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT2G27310.1 Arabidopsis thaliana 0.42 F-box family protein SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT2G27320.1 Arabidopsis thaliana 0.61 Protein of Unknown Function (DUF239) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G27340.1 Arabidopsis thaliana 0.45 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G27350.6 Arabidopsis thaliana 0.46 OTU-like cysteine protease family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G27430.1 Arabidopsis thaliana 0.37 ARM repeat superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G27440.1 Arabidopsis thaliana 0.62 Unknown SRR364677:GFP sample AT2G27480.1 Arabidopsis thaliana 0.34 Calcium-binding EF-hand family protein SRR364677:GFP sample AT2G27490.2 Arabidopsis thaliana 0.66 dephospho-CoA kinase family SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G27500.1 Arabidopsis thaliana 0.47 Glycosyl hydrolase superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G27505.1 Arabidopsis thaliana 0.73 FBD-like domain family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G27540.1 Arabidopsis thaliana 0.46 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT2G27580.1 Arabidopsis thaliana 0.34 A20/AN1-like zinc finger family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G27690.1 Arabidopsis thaliana 0.33 cytochrome P450, family 94, subfamily C, polypeptide 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G27700.1 Arabidopsis thaliana 0.74 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G27730.1 Arabidopsis thaliana 0.31 copper ion binding ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G27770.1 Arabidopsis thaliana 0.52 Plant protein of unknown function (DUF868) SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G27790.2 Arabidopsis thaliana 0.36 RNA-binding (RRM/RBD/RNP motifs) family protein SRR1652314:atrtf2-1 AT2G27880.1 Arabidopsis thaliana 0.35 Argonaute family protein SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT2G27936.1 Arabidopsis thaliana 0.36 Unknown SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT2G28040.1 Arabidopsis thaliana 0.40 Eukaryotic aspartyl protease family protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G28056.1 Arabidopsis thaliana 0.51 MIR172/MIR172A; miRNA SRR1004833:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 30 minutes Replicate A AT2G28070.1 Arabidopsis thaliana 0.37 ABC-2 type transporter family protein SRR1652314:atrtf2-1 AT2G28080.1 Arabidopsis thaliana 0.43 UDP-Glycosyltransferase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G28105.1 Arabidopsis thaliana 0.39 Unknown SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G28110.1 Arabidopsis thaliana 0.33 Exostosin family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G28140.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF1635) SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT2G28180.1 Arabidopsis thaliana 0.94 Cation/hydrogen exchanger family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G28210.1 Arabidopsis thaliana 0.49 alpha carbonic anhydrase 2 SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G28270.1 Arabidopsis thaliana 0.48 Cysteine/Histidine-rich C1 domain family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT2G28310.1 Arabidopsis thaliana 0.45 Protein of unknown function (DUF707) SRR1652314:atrtf2-1 AT2G28330.1 Arabidopsis thaliana 0.34 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G28340.1 Arabidopsis thaliana 0.46 GATA transcription factor 13 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G28350.1 Arabidopsis thaliana 0.43 auxin response factor 10 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G28440.1 Arabidopsis thaliana 0.40 proline-rich family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G28460.1 Arabidopsis thaliana 0.58 Cysteine/Histidine-rich C1 domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G28470.2 Arabidopsis thaliana 0.45 beta-galactosidase 8 SRR1046895:GSM1287160: Arabidopsis thaliana Zu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G28507.1 Arabidopsis thaliana 0.53 Unknown SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G28540.2 Arabidopsis thaliana 0.53 RNA binding (RRM/RBD/RNP motifs) family protein SRR1652314:atrtf2-1 AT2G28640.1 Arabidopsis thaliana 0.69 exocyst subunit exo70 family protein H5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G28700.1 Arabidopsis thaliana 0.31 AGAMOUS-like 46 SRR1046875:GSM1287140: Arabidopsis thaliana Po-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G28720.1 Arabidopsis thaliana 0.35 Histone superfamily protein SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT2G28730.1 Arabidopsis thaliana 0.37 pre-tRNA SRR499985:col-0 replicate 2 AT2G28760.2 Arabidopsis thaliana 0.65 UDP-XYL synthase 6 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G28800.1 Arabidopsis thaliana 0.36 63 kDa inner membrane family protein SRR1652314:atrtf2-1 AT2G28800.2 Arabidopsis thaliana 0.45 63 kDa inner membrane family protein SRR392133:GSM852823: mRNA-seq in fcl, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT2G28810.2 Arabidopsis thaliana 0.48 Dof-type zinc finger DNA-binding family protein SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT2G28830.1 Arabidopsis thaliana 0.40 PLANT U-BOX 12 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G28850.1 Arabidopsis thaliana 0.53 cytochrome P450, family 710, subfamily A, polypeptide 3 SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT2G28860.1 Arabidopsis thaliana 0.35 cytochrome P450, family 710, subfamily A, polypeptide 4 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 SRR926211:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 2 SRR926212:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 3 AT2G28880.1 Arabidopsis thaliana 0.35 para-aminobenzoate (PABA) synthase family protein SRR1652314:atrtf2-1 AT2G28940.1 Arabidopsis thaliana 0.39 Protein kinase superfamily protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT2G29000.1 Arabidopsis thaliana 0.52 Leucine-rich repeat protein kinase family protein SRR1046874:GSM1287139: Arabidopsis thaliana Po-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046889:GSM1287154: Arabidopsis thaliana Ws-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046876:GSM1287141: Arabidopsis thaliana Po-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046891:GSM1287156: Arabidopsis thaliana Ws-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G29040.1 Arabidopsis thaliana 0.41 Exostosin family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G29050.1 Arabidopsis thaliana 0.66 RHOMBOID-like 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G29090.2 Arabidopsis thaliana 0.57 cytochrome P450, family 707, subfamily A, polypeptide 2 SRR934392:GSM1185650: Sample 2 (3794); Arabidopsis thaliana; RNA-Seq AT2G29100.1 Arabidopsis thaliana 0.32 glutamate receptor 2.9 SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G29130.1 Arabidopsis thaliana 0.32 laccase 2 SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT2G29150.1 Arabidopsis thaliana 0.78 NAD(P)-binding Rossmann-fold superfamily protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT2G29190.2 Arabidopsis thaliana 0.42 pumilio 2 SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT2G29260.1 Arabidopsis thaliana 0.30 NAD(P)-binding Rossmann-fold superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G29263.1 Arabidopsis thaliana 0.42 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G29280.1 Arabidopsis thaliana 0.34 Unknown SRR477079:GSM912638: pifq RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477080:GSM912639: pifq RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR477081:GSM912640: pifq;bzr1-1D RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477082:GSM912641: pifq;bzr1-1D RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT2G29290.1 Arabidopsis thaliana 0.30 NAD(P)-binding Rossmann-fold superfamily protein SRR627669:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627670:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627675:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq SRR627676:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq AT2G29290.2 Arabidopsis thaliana 0.61 NAD(P)-binding Rossmann-fold superfamily protein SRR1652314:atrtf2-1 AT2G29310.1 Arabidopsis thaliana 0.64 NAD(P)-binding Rossmann-fold superfamily protein SRR1652314:atrtf2-1 AT2G29350.3 Arabidopsis thaliana 0.45 senescence-associated gene 13 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G29380.1 Arabidopsis thaliana 0.35 highly ABA-induced PP2C gene 3 SRR907283:SAD1 dynamically regulates alternative splicing and stress tolerance AT2G29390.5 Arabidopsis thaliana 0.50 sterol 4-alpha-methyl-oxidase 2-2 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G29410.1 Arabidopsis thaliana 0.31 metal tolerance protein B1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G29420.1 Arabidopsis thaliana 0.62 glutathione S-transferase tau 7 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G29440.1 Arabidopsis thaliana 0.61 glutathione S-transferase tau 6 SRR364677:GFP sample SRR364678:nonGFP sample AT2G29452.1 Arabidopsis thaliana 0.53 Unknown SRR960219:GSM1219971: WT_mRNA-Seq (rrp6l1-2 control); Arabidopsis thaliana; RNA-Seq AT2G29470.1 Arabidopsis thaliana 0.34 glutathione S-transferase tau 3 SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G29530.1 Arabidopsis thaliana 0.35 Tim10/DDP family zinc finger protein SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT2G29540.3 Arabidopsis thaliana 0.66 RNApolymerase 14 kDa subunit SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT2G29620.1 Arabidopsis thaliana 0.57 Unknown SRR364677:GFP sample AT2G29628.1 Arabidopsis thaliana 0.53 Unknown SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT2G29654.1 Arabidopsis thaliana 0.55 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G29679.1 Arabidopsis thaliana 0.63 Unknown SRR1179961:GSM1337727: Arabidopsis thaliana Bur-0 X Col-0 seedling, biological replicate 3; Arabidopsis thaliana; RNA-Seq AT2G29730.1 Arabidopsis thaliana 0.59 UDP-glucosyl transferase 71D1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G30020.1 Arabidopsis thaliana 0.39 Protein phosphatase 2C family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G30032.1 Arabidopsis thaliana 1.00 Unknown SRR627662:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq AT2G30040.1 Arabidopsis thaliana 0.33 mitogen-activated protein kinase kinase kinase 14 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G30070.1 Arabidopsis thaliana 0.45 potassium transporter 1 SRR1652314:atrtf2-1 AT2G30130.1 Arabidopsis thaliana 0.54 Lateral organ boundaries (LOB) domain family protein SRR364677:GFP sample SRR364678:nonGFP sample AT2G30160.1 Arabidopsis thaliana 0.44 Mitochondrial substrate carrier family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G30250.1 Arabidopsis thaliana 0.41 WRKY DNA-binding protein 25 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT2G30362.1 Arabidopsis thaliana 0.39 other RNA SRR364677:GFP sample AT2G30390.2 Arabidopsis thaliana 0.45 ferrochelatase 2 SRR392132:GSM852822: mRNA-seq in fcl, technical replicate 3; Arabidopsis thaliana; RNA-Seq SRR392133:GSM852823: mRNA-seq in fcl, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT2G30420.1 Arabidopsis thaliana 0.54 Homeodomain-like superfamily protein SRR1046891:GSM1287156: Arabidopsis thaliana Ws-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G30500.2 Arabidopsis thaliana 0.31 Kinase interacting (KIP1-like) family protein SRR364677:GFP sample SRR364678:nonGFP sample AT2G30505.1 Arabidopsis thaliana 0.79 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G30520.2 Arabidopsis thaliana 0.37 Phototropic-responsive NPH3 family protein SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq AT2G30540.1 Arabidopsis thaliana 0.31 Thioredoxin superfamily protein SRR1598767:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G30550.1 Arabidopsis thaliana 0.32 alpha/beta-Hydrolases superfamily protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT2G30600.1 Arabidopsis thaliana 0.36 BTB/POZ domain-containing protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT2G30600.4 Arabidopsis thaliana 0.34 BTB/POZ domain-containing protein SRR515317:GSM951349: RVE8:GR_DEX_1; Arabidopsis thaliana; RNA-Seq SRR515318:GSM951349: RVE8:GR_DEX_1; Arabidopsis thaliana; RNA-Seq SRR515319:GSM951350: RVE8:GR_DEX_2; Arabidopsis thaliana; RNA-Seq SRR515320:GSM951350: RVE8:GR_DEX_2; Arabidopsis thaliana; RNA-Seq SRR515321:GSM951351: RVE8:GR_DEX_3; Arabidopsis thaliana; RNA-Seq SRR515322:GSM951351: RVE8:GR_DEX_3; Arabidopsis thaliana; RNA-Seq AT2G30600.5 Arabidopsis thaliana 0.36 BTB/POZ domain-containing protein SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT2G30620.2 Arabidopsis thaliana 0.43 winged-helix DNA-binding transcription factor family protein SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT2G30650.1 Arabidopsis thaliana 0.71 ATP-dependent caseinolytic (Clp) protease/crotonase family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G30660.1 Arabidopsis thaliana 0.32 ATP-dependent caseinolytic (Clp) protease/crotonase family protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT2G30670.1 Arabidopsis thaliana 0.34 NAD(P)-binding Rossmann-fold superfamily protein SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq SRR671949:GSM1077435: Root_polyA_KNO3_Treatment_rep2; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT2G30720.1 Arabidopsis thaliana 0.46 Thioesterase/thiol ester dehydrase-isomerase superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries AT2G30766.1 Arabidopsis thaliana 0.33 Unknown SRR1652315:prp8-7 AT2G30766.2 Arabidopsis thaliana 0.60 Unknown SRR609270:GSM1025550: mos2-2 rep2; Arabidopsis thaliana; RNA-Seq AT2G30770.1 Arabidopsis thaliana 0.56 cytochrome P450, family 71, subfamily A, polypeptide 13 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G30810.1 Arabidopsis thaliana 0.38 Gibberellin-regulated family protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT2G30880.2 Arabidopsis thaliana 0.62 Pleckstrin homology (PH) domain-containing protein SRR1652314:atrtf2-1 AT2G30910.1 Arabidopsis thaliana 0.38 actin-related protein C1A SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G30910.2 Arabidopsis thaliana 0.48 actin-related protein C1A SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq AT2G30910.3 Arabidopsis thaliana 0.37 actin-related protein C1A SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G30925.1 Arabidopsis thaliana 0.86 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT2G30930.1 Arabidopsis thaliana 0.51 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G30933.2 Arabidopsis thaliana 0.39 Carbohydrate-binding X8 domain superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT2G30990.1 Arabidopsis thaliana 0.46 Protein of unknown function (DUF688) SRR392126:GSM852816: mRNA-seq in flc, technical replicate 1; Arabidopsis thaliana; RNA-Seq AT2G30990.3 Arabidopsis thaliana 0.32 Protein of unknown function (DUF688) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G31010.1 Arabidopsis thaliana 0.34 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G31010.2 Arabidopsis thaliana 0.71 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G31018.1 Arabidopsis thaliana 0.45 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G31020.1 Arabidopsis thaliana 0.52 OSBP(oxysterol binding protein)-related protein 1A SRR364677:GFP sample AT2G31082.1 Arabidopsis thaliana 0.56 CLAVATA3/ESR-RELATED 7 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G31085.1 Arabidopsis thaliana 0.41 CLAVATA3/ESR-RELATED 6 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G31200.1 Arabidopsis thaliana 0.36 actin depolymerizing factor 6 SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq AT2G31215.1 Arabidopsis thaliana 0.51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT2G31218.1 Arabidopsis thaliana 0.98 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT2G31260.1 Arabidopsis thaliana 0.61 autophagy 9 (APG9) SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G31271.1 Arabidopsis thaliana 0.77 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT2G31280.2 Arabidopsis thaliana 0.39 conserved peptide upstream open reading frame 7 SRR1144845:be1-3 2 days on SIM AT2G31310.1 Arabidopsis thaliana 0.39 LOB domain-containing protein 14 SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT2G31345.1 Arabidopsis thaliana 0.44 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G31350.1 Arabidopsis thaliana 0.33 glyoxalase 2-5 SRR364677:GFP sample AT2G31370.1 Arabidopsis thaliana 0.34 Basic-leucine zipper (bZIP) transcription factor family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G31420.1 Arabidopsis thaliana 0.40 Domain of unknown function (DUF313) SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G31430.1 Arabidopsis thaliana 0.88 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G31450.1 Arabidopsis thaliana 0.58 DNA glycosylase superfamily protein SRR1652314:atrtf2-1 AT2G31450.2 Arabidopsis thaliana 0.45 DNA glycosylase superfamily protein SRR1652314:atrtf2-1 AT2G31500.1 Arabidopsis thaliana 0.82 calcium-dependent protein kinase 24 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G31540.1 Arabidopsis thaliana 0.86 GDSL-like Lipase/Acylhydrolase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G31600.1 Arabidopsis thaliana 0.43 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G31690.1 Arabidopsis thaliana 0.73 alpha/beta-Hydrolases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G31760.1 Arabidopsis thaliana 0.38 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G31770.1 Arabidopsis thaliana 0.42 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G31780.1 Arabidopsis thaliana 0.62 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G31830.1 Arabidopsis thaliana 0.71 endonuclease/exonuclease/phosphatase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G31830.2 Arabidopsis thaliana 0.76 endonuclease/exonuclease/phosphatase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G31860.1 Arabidopsis thaliana 0.55 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G31865.1 Arabidopsis thaliana 0.51 poly(ADP-ribose) glycohydrolase 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G31865.2 Arabidopsis thaliana 0.30 poly(ADP-ribose) glycohydrolase 2 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G31870.2 Arabidopsis thaliana 0.58 Poly (ADP-ribose) glycohydrolase (PARG) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G31930.1 Arabidopsis thaliana 0.32 Unknown SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G31940.1 Arabidopsis thaliana 0.69 Unknown SRR364678:nonGFP sample AT2G31945.1 Arabidopsis thaliana 0.51 Unknown SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT2G31955.3 Arabidopsis thaliana 0.58 cofactor of nitrate reductase and xanthine dehydrogenase 2 SRR1013921:responses to BL AT2G31960.1 Arabidopsis thaliana 0.39 glucan synthase-like 3 SRR1652314:atrtf2-1 AT2G31981.1 Arabidopsis thaliana 0.34 Unknown SRR068973:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068974:GSM607728: Col-WTxLer-WT_full-Endosperm AT2G32000.1 Arabidopsis thaliana 0.48 DNA topoisomerase, type IA, core SRR1652314:atrtf2-1 AT2G32000.2 Arabidopsis thaliana 0.42 DNA topoisomerase, type IA, core SRR1652314:atrtf2-1 AT2G32030.1 Arabidopsis thaliana 0.63 Acyl-CoA N-acyltransferases (NAT) superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G32060.1 Arabidopsis thaliana 0.33 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT2G32110.1 Arabidopsis thaliana 0.36 pre-tRNA SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT2G32120.1 Arabidopsis thaliana 0.59 heat-shock protein 70T-2 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT2G32120.2 Arabidopsis thaliana 0.48 heat-shock protein 70T-2 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT2G32140.1 Arabidopsis thaliana 0.34 transmembrane receptors SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G32160.1 Arabidopsis thaliana 0.37 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT2G32160.2 Arabidopsis thaliana 0.83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT2G32179.1 Arabidopsis thaliana 0.40 other RNA SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G32270.1 Arabidopsis thaliana 0.42 zinc transporter 3 precursor ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G32273.1 Arabidopsis thaliana 1.00 MIR417 (MICRORNA417); miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G32320.2 Arabidopsis thaliana 0.32 tRNAHis guanylyltransferase SRR402994:GSM867674: Col_PAC; Arabidopsis thaliana; RNA-Seq AT2G32390.3 Arabidopsis thaliana 0.56 glutamate receptor 3.5 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G32460.1 Arabidopsis thaliana 0.82 myb domain protein 101 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G32610.1 Arabidopsis thaliana 0.54 cellulose synthase-like B1 SRR1144842:be1-3 7 days on CIM AT2G32650.1 Arabidopsis thaliana 0.31 RmlC-like cupins superfamily protein SRR1652314:atrtf2-1 AT2G32690.1 Arabidopsis thaliana 0.42 glycine-rich protein 23 SRR345562:GSM798296: mRNASeq_WT_rep2 AT2G32690.2 Arabidopsis thaliana 0.49 glycine-rich protein 23 SRR345562:GSM798296: mRNASeq_WT_rep2 AT2G32690.3 Arabidopsis thaliana 0.48 glycine-rich protein 23 SRR345562:GSM798296: mRNASeq_WT_rep2 AT2G32785.1 Arabidopsis thaliana 0.91 Unknown SRR1257397:GSM1371359: mock T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G32788.1 Arabidopsis thaliana 0.35 Unknown SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G32795.1 Arabidopsis thaliana 0.31 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G32840.1 Arabidopsis thaliana 0.39 proline-rich family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G32885.1 Arabidopsis thaliana 0.37 Rapid alkalinization factor (RALF) family protein SRR1046871:GSM1287136: Arabidopsis thaliana Oy-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G32960.1 Arabidopsis thaliana 0.34 Phosphotyrosine protein phosphatases superfamily protein SRR1046854:GSM1287119: Arabidopsis thaliana Edi-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G33060.1 Arabidopsis thaliana 0.36 receptor like protein 27 SRR493289:ein2 S645A 3-day etiolated seedlings in air, biological replicate 1 AT2G33070.1 Arabidopsis thaliana 0.31 nitrile specifier protein 2 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G33070.2 Arabidopsis thaliana 0.58 nitrile specifier protein 2 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G33080.1 Arabidopsis thaliana 0.36 receptor like protein 28 SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT2G33100.1 Arabidopsis thaliana 0.95 cellulose synthase-like D1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G33120.2 Arabidopsis thaliana 0.41 synaptobrevin-related protein 1 SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G33130.1 Arabidopsis thaliana 0.38 ralf-like 18 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT2G33160.1 Arabidopsis thaliana 0.31 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT2G33270.1 Arabidopsis thaliana 0.89 atypical CYS HIS rich thioredoxin 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G33310.1 Arabidopsis thaliana 0.33 auxin-induced protein 13 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT2G33320.1 Arabidopsis thaliana 0.38 Calcium-dependent lipid-binding (CaLB domain) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G33350.2 Arabidopsis thaliana 0.58 CCT motif family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G33360.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF3527) SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT2G33380.1 Arabidopsis thaliana 0.52 Caleosin-related family protein SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT2G33380.2 Arabidopsis thaliana 0.54 Caleosin-related family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G33420.1 Arabidopsis thaliana 0.92 Protein of unknown function (DUF810) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G33460.1 Arabidopsis thaliana 0.91 ROP-interactive CRIB motif-containing protein 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G33470.2 Arabidopsis thaliana 0.36 glycolipid transfer protein 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G33510.1 Arabidopsis thaliana 0.34 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT2G33530.1 Arabidopsis thaliana 0.59 serine carboxypeptidase-like 46 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G33620.1 Arabidopsis thaliana 0.34 AT hook motif DNA-binding family protein SRR949991:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) AT2G33650.1 Arabidopsis thaliana 0.37 pre-tRNA SRR345562:GSM798296: mRNASeq_WT_rep2 SRR527167:Col-0 on geldanamycin replicate2 AT2G33707.1 Arabidopsis thaliana 0.51 Unknown SRR1039917:GSM1276504: ColxCvi_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G33775.1 Arabidopsis thaliana 0.94 ralf-like 19 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G33790.1 Arabidopsis thaliana 0.54 arabinogalactan protein 30 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G33796.1 Arabidopsis thaliana 0.33 FBD-like domain family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G33815.1 Arabidopsis thaliana 0.39 other RNA SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT2G33820.1 Arabidopsis thaliana 0.49 Mitochondrial substrate carrier family protein SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G33830.2 Arabidopsis thaliana 0.41 Dormancy/auxin associated family protein SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT2G33847.1 Arabidopsis thaliana 0.37 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G33870.1 Arabidopsis thaliana 0.56 RAB GTPase homolog A1H SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G33880.1 Arabidopsis thaliana 0.32 homeobox-3 SRR1207194:GSM1359146: WT 1; Arabidopsis thaliana; RNA-Seq SRR1207195:GSM1359147: WT 2; Arabidopsis thaliana; RNA-Seq SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq SRR1207198:GSM1359150: nga 3; Arabidopsis thaliana; RNA-Seq SRR1207199:GSM1359151: 35S:NGA 1; Arabidopsis thaliana; RNA-Seq SRR1207200:GSM1359152: 35S:NGA 2; Arabidopsis thaliana; RNA-Seq SRR1207201:GSM1359153: 35S:NGA 3; Arabidopsis thaliana; RNA-Seq AT2G33950.1 Arabidopsis thaliana 0.33 pre-tRNA SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT2G34000.1 Arabidopsis thaliana 0.36 RING/U-box superfamily protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G34060.1 Arabidopsis thaliana 0.38 Peroxidase superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT2G34070.1 Arabidopsis thaliana 0.34 TRICHOME BIREFRINGENCE-LIKE 37 SRR446044:Vir.12h.B AT2G34080.1 Arabidopsis thaliana 0.34 Cysteine proteinases superfamily protein SRR1260035:P-_hps7_R2 SRR1144842:be1-3 7 days on CIM AT2G34090.1 Arabidopsis thaliana 0.49 maternal effect embryo arrest 18 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G34123.1 Arabidopsis thaliana 0.35 Cysteine-rich protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G34202.1 Arabidopsis thaliana 0.35 MIR399D; miRNA SRR388666:GSM847335: WT-Seedling-RNAseq-2; Arabidopsis thaliana; RNA-Seq AT2G34208.1 Arabidopsis thaliana 0.46 MIR399F; miRNA SRR944368:GSM1197430: Salt-3h_nonpolyA; Arabidopsis thaliana; RNA-Seq SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT2G34210.1 Arabidopsis thaliana 0.56 Transcription elongation factor Spt5 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G34224.1 Arabidopsis thaliana 0.85 Unknown SRR1257399:GSM1371361: infected T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G34250.2 Arabidopsis thaliana 0.43 SecY protein transport family protein SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT2G34340.1 Arabidopsis thaliana 0.57 Protein of unknown function, DUF584 SRR364678:nonGFP sample AT2G34360.1 Arabidopsis thaliana 0.47 MATE efflux family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G34400.1 Arabidopsis thaliana 0.45 Pentatricopeptide repeat (PPR-like) superfamily protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G34440.1 Arabidopsis thaliana 0.59 AGAMOUS-like 29 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G34500.1 Arabidopsis thaliana 0.35 cytochrome P450, family 710, subfamily A, polypeptide 1 SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G34510.1 Arabidopsis thaliana 0.48 Protein of unknown function, DUF642 SRR1159837:GSM1321710: Set_2_bio_replicate_2-WT_Col; Arabidopsis thaliana; RNA-Seq AT2G34530.1 Arabidopsis thaliana 0.31 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G34555.1 Arabidopsis thaliana 0.51 gibberellin 2-oxidase 3 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G34560.1 Arabidopsis thaliana 0.40 P-loop containing nucleoside triphosphate hydrolases superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G34660.1 Arabidopsis thaliana 0.68 multidrug resistance-associated protein 2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G34660.2 Arabidopsis thaliana 0.63 multidrug resistance-associated protein 2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G34800.1 Arabidopsis thaliana 0.78 Unknown SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G34825.1 Arabidopsis thaliana 0.46 RALF-like 20 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G34830.1 Arabidopsis thaliana 0.31 WRKY DNA-binding protein 35 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G34840.2 Arabidopsis thaliana 0.45 Coatomer epsilon subunit SRR1652315:prp8-7 AT2G34880.1 Arabidopsis thaliana 0.37 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G34910.1 Arabidopsis thaliana 0.89 Unknown SRR364677:GFP sample AT2G34920.1 Arabidopsis thaliana 0.44 RING/U-box superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT2G34930.1 Arabidopsis thaliana 0.44 disease resistance family protein / LRR family protein SRR364678:nonGFP sample AT2G34940.1 Arabidopsis thaliana 0.59 VACUOLAR SORTING RECEPTOR 5 SRR364677:GFP sample AT2G34985.1 Arabidopsis thaliana 0.35 pre-tRNA SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G35060.2 Arabidopsis thaliana 0.91 K+ uptake permease 11 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G35155.1 Arabidopsis thaliana 0.35 Trypsin family protein SRR988550:GSM1232786: hta6_7_12_mRNA; Arabidopsis thaliana; RNA-Seq AT2G35190.1 Arabidopsis thaliana 0.47 novel plant snare 11 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G35210.1 Arabidopsis thaliana 0.48 root and pollen arfgap SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G35215.1 Arabidopsis thaliana 0.61 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G35230.1 Arabidopsis thaliana 0.60 VQ motif-containing protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT2G35250.1 Arabidopsis thaliana 0.31 Protein of Unknown Function (DUF239) SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT2G35270.1 Arabidopsis thaliana 0.35 Predicted AT-hook DNA-binding family protein SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G35300.1 Arabidopsis thaliana 0.56 Late embryogenesis abundant protein, group 1 protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT2G35345.1 Arabidopsis thaliana 0.40 Unknown SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G35382.1 Arabidopsis thaliana 0.56 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G35387.1 Arabidopsis thaliana 0.62 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G35540.1 Arabidopsis thaliana 0.31 DNAJ heat shock N-terminal domain-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G35550.4 Arabidopsis thaliana 0.33 basic pentacysteine 7 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT2G35612.1 Arabidopsis thaliana 0.32 Unknown SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT2G35637.1 Arabidopsis thaliana 0.60 other RNA SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G35650.1 Arabidopsis thaliana 0.31 cellulose synthase like SRR1652314:atrtf2-1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G35710.1 Arabidopsis thaliana 0.51 Nucleotide-diphospho-sugar transferases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G35710.3 Arabidopsis thaliana 0.31 Nucleotide-diphospho-sugar transferases superfamily protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G35733.1 Arabidopsis thaliana 0.49 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G35736.1 Arabidopsis thaliana 0.64 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G35742.1 Arabidopsis thaliana 0.45 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT2G35743.1 Arabidopsis thaliana 0.77 Unknown SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A AT2G35744.1 Arabidopsis thaliana 0.57 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT2G35747.1 Arabidopsis thaliana 0.35 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G35750.1 Arabidopsis thaliana 0.50 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G35765.1 Arabidopsis thaliana 0.95 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G35795.1 Arabidopsis thaliana 0.36 Chaperone DnaJ-domain superfamily protein SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT2G35840.3 Arabidopsis thaliana 0.30 Sucrose-6F-phosphate phosphohydrolase family protein SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT2G35890.1 Arabidopsis thaliana 0.43 calcium-dependent protein kinase 25 SRR364677:GFP sample AT2G35900.1 Arabidopsis thaliana 0.51 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G35920.1 Arabidopsis thaliana 0.56 RNA helicase family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G35970.1 Arabidopsis thaliana 0.50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G35980.1 Arabidopsis thaliana 0.32 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G36020.1 Arabidopsis thaliana 0.92 HVA22-like protein J SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G36053.1 Arabidopsis thaliana 0.54 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq AT2G36120.1 Arabidopsis thaliana 0.59 Glycine-rich protein family SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G36190.1 Arabidopsis thaliana 0.70 cell wall invertase 4 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G36230.1 Arabidopsis thaliana 0.40 Aldolase-type TIM barrel family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G36240.1 Arabidopsis thaliana 0.34 pentatricopeptide (PPR) repeat-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G36255.1 Arabidopsis thaliana 0.90 Defensin-like (DEFL) family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT2G36261.1 Arabidopsis thaliana 0.65 Unknown SRR1257399:GSM1371361: infected T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G36295.1 Arabidopsis thaliana 0.56 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G36300.1 Arabidopsis thaliana 0.31 Integral membrane Yip1 family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G36305.1 Arabidopsis thaliana 0.31 farnesylated protein-converting enzyme 2 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G36310.1 Arabidopsis thaliana 0.31 uridine-ribohydrolase 1 SRR364677:GFP sample AT2G36410.2 Arabidopsis thaliana 0.33 Family of unknown function (DUF662) SRR627629:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627630:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq AT2G36440.1 Arabidopsis thaliana 0.81 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G36450.1 Arabidopsis thaliana 0.74 Integrase-type DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G36460.2 Arabidopsis thaliana 0.54 Aldolase superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT2G36530.1 Arabidopsis thaliana 0.60 Enolase ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G36550.1 Arabidopsis thaliana 0.41 Unknown SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039912:GSM1276499: LerxLer_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039924:GSM1276511: LerxCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039926:GSM1276513: CvixLer_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G36560.1 Arabidopsis thaliana 0.58 AT hook motif DNA-binding family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G36580.1 Arabidopsis thaliana 0.33 Pyruvate kinase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G36590.1 Arabidopsis thaliana 0.46 proline transporter 3 SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT2G36632.1 Arabidopsis thaliana 0.77 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G36640.1 Arabidopsis thaliana 0.31 embryonic cell protein 63 SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq SRR1105596:GSM1303969: CL37_11-12_B; Arabidopsis thaliana; RNA-Seq SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT2G36650.1 Arabidopsis thaliana 0.39 Unknown SRR926216:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 1 SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT2G36680.3 Arabidopsis thaliana 0.48 Modifier of rudimentary (Mod(r)) protein SRR1652314:atrtf2-1 AT2G36680.4 Arabidopsis thaliana 0.37 Modifier of rudimentary (Mod(r)) protein SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT2G36720.1 Arabidopsis thaliana 0.50 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain SRR1652314:atrtf2-1 AT2G36790.1 Arabidopsis thaliana 0.32 UDP-glucosyl transferase 73C6 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT2G36792.1 Arabidopsis thaliana 0.45 other RNA SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G36792.2 Arabidopsis thaliana 0.40 other RNA SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G36800.1 Arabidopsis thaliana 0.37 don-glucosyltransferase 1 SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT2G36815.2 Arabidopsis thaliana 0.39 Unknown SRR953029:RLK in plant defense - mutant LPS - biological replicate 1 SRR953030:RLK in plant defense - mutant LPS - biological replicate 2 SRR953371:RLK in plant defense - mutant LPS - biological replicate 1 SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq AT2G36854.1 Arabidopsis thaliana 0.47 Unknown SRR1652314:atrtf2-1 AT2G36895.1 Arabidopsis thaliana 0.31 Unknown ERR229858:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G36930.1 Arabidopsis thaliana 0.37 zinc finger (C2H2 type) family protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM AT2G36950.1 Arabidopsis thaliana 0.34 Heavy metal transport/detoxification superfamily protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT2G37010.1 Arabidopsis thaliana 0.31 non-intrinsic ABC protein 12 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G37040.1 Arabidopsis thaliana 0.37 PHE ammonia lyase 1 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT2G37050.2 Arabidopsis thaliana 0.36 Leucine-rich repeat protein kinase family protein SRR1652314:atrtf2-1 AT2G37100.1 Arabidopsis thaliana 0.43 protamine P1 family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G37250.1 Arabidopsis thaliana 0.50 adenosine kinase ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G37280.1 Arabidopsis thaliana 0.32 pleiotropic drug resistance 5 SRR926216:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 1 SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT2G37290.1 Arabidopsis thaliana 0.39 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR364677:GFP sample SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G37340.2 Arabidopsis thaliana 0.31 arginine/serine-rich zinc knuckle-containing protein 33 SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G37370.1 Arabidopsis thaliana 0.31 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G37410.2 Arabidopsis thaliana 0.31 translocase inner membrane subunit 17-2 SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT2G37430.1 Arabidopsis thaliana 0.80 C2H2 and C2HC zinc fingers superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G37435.1 Arabidopsis thaliana 0.44 Cystatin/monellin superfamily protein SRR1046895:GSM1287160: Arabidopsis thaliana Zu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G37440.2 Arabidopsis thaliana 0.42 DNAse I-like superfamily protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G37460.1 Arabidopsis thaliana 0.39 nodulin MtN21 /EamA-like transporter family protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT2G37530.1 Arabidopsis thaliana 0.30 Unknown ERR588044:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G37600.2 Arabidopsis thaliana 0.39 Ribosomal protein L36e family protein SRR515324:GSM951352: RVE8:GR_mock_1; Arabidopsis thaliana; RNA-Seq SRR515321:GSM951351: RVE8:GR_DEX_3; Arabidopsis thaliana; RNA-Seq AT2G37620.1 Arabidopsis thaliana 0.83 actin 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G37630.1 Arabidopsis thaliana 0.36 myb-like HTH transcriptional regulator family protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo AT2G37740.1 Arabidopsis thaliana 0.60 zinc-finger protein 10 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G37800.1 Arabidopsis thaliana 0.33 Cysteine/Histidine-rich C1 domain family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G37810.1 Arabidopsis thaliana 0.31 Cysteine/Histidine-rich C1 domain family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq AT2G37880.1 Arabidopsis thaliana 0.34 Protein of unknown function, DUF617 SRR1039926:GSM1276513: CvixLer_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G37980.1 Arabidopsis thaliana 0.68 O-fucosyltransferase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G38030.1 Arabidopsis thaliana 0.36 pre-tRNA SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G38060.1 Arabidopsis thaliana 0.33 phosphate transporter 4;2 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G38080.1 Arabidopsis thaliana 0.52 Laccase/Diphenol oxidase family protein SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT2G38170.3 Arabidopsis thaliana 0.33 cation exchanger 1 SRR1019222:GSM1252087: edm2-4 RNA-seq; Arabidopsis thaliana; RNA-Seq AT2G38195.2 Arabidopsis thaliana 0.39 RING/U-box superfamily protein SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G38304.1 Arabidopsis thaliana 0.55 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G38340.1 Arabidopsis thaliana 0.37 Integrase-type DNA-binding superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G38350.1 Arabidopsis thaliana 0.91 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G38400.2 Arabidopsis thaliana 0.35 alanine:glyoxylate aminotransferase 3 SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT2G38430.1 Arabidopsis thaliana 0.31 Unknown SRR1144843:WS 7 days on CIM AT2G38470.1 Arabidopsis thaliana 0.48 WRKY DNA-binding protein 33 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G38500.1 Arabidopsis thaliana 0.75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G38544.1 Arabidopsis thaliana 0.43 Unknown SRR1013925:responses to BL AT2G38646.1 Arabidopsis thaliana 0.42 Unknown SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G38660.4 Arabidopsis thaliana 0.52 Amino acid dehydrogenase family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G38710.2 Arabidopsis thaliana 0.36 AMMECR1 family ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G38730.1 Arabidopsis thaliana 0.44 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G38750.1 Arabidopsis thaliana 0.44 annexin 4 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G38823.1 Arabidopsis thaliana 0.37 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G38860.1 Arabidopsis thaliana 0.60 Class I glutamine amidotransferase-like superfamily protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G38860.2 Arabidopsis thaliana 0.49 Class I glutamine amidotransferase-like superfamily protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G38870.1 Arabidopsis thaliana 0.52 Serine protease inhibitor, potato inhibitor I-type family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G38920.1 Arabidopsis thaliana 0.37 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G38960.3 Arabidopsis thaliana 0.35 endoplasmic reticulum oxidoreductins 2 SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G38980.1 Arabidopsis thaliana 0.39 Unknown SRR1652314:atrtf2-1 AT2G39030.1 Arabidopsis thaliana 0.35 Acyl-CoA N-acyltransferases (NAT) superfamily protein SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G39040.1 Arabidopsis thaliana 0.79 Peroxidase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G39060.1 Arabidopsis thaliana 0.82 Nodulin MtN3 family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G39080.1 Arabidopsis thaliana 0.51 NAD(P)-binding Rossmann-fold superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G39110.1 Arabidopsis thaliana 0.44 Protein kinase superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample AT2G39120.1 Arabidopsis thaliana 0.44 Ubiquitin carboxyl-terminal hydrolase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G39130.1 Arabidopsis thaliana 0.49 Transmembrane amino acid transporter family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G39170.1 Arabidopsis thaliana 0.39 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G39175.1 Arabidopsis thaliana 0.50 MIR160/MIR160A; miRNA SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G39180.1 Arabidopsis thaliana 0.35 CRINKLY4 related 2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G39190.1 Arabidopsis thaliana 0.64 Protein kinase superfamily protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT2G39280.2 Arabidopsis thaliana 0.38 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G39290.1 Arabidopsis thaliana 0.36 phosphatidylglycerolphosphate synthase 1 SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G39370.1 Arabidopsis thaliana 0.48 Unknown SRR1144842:be1-3 7 days on CIM AT2G39380.1 Arabidopsis thaliana 0.47 exocyst subunit exo70 family protein H2 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT2G39410.2 Arabidopsis thaliana 0.54 alpha/beta-Hydrolases superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G39530.1 Arabidopsis thaliana 0.64 Uncharacterised protein family (UPF0497) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G39540.1 Arabidopsis thaliana 0.47 Gibberellin-regulated family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G39610.1 Arabidopsis thaliana 0.98 pre-tRNA SRR499986:gun1 replicate 1 SRR499987:sig6 replicate 1 AT2G39650.1 Arabidopsis thaliana 0.53 Protein of unknown function (DUF506) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G39681.1 Arabidopsis thaliana 0.34 TAS2; other RNA SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. AT2G39700.1 Arabidopsis thaliana 0.74 expansin A4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G39760.2 Arabidopsis thaliana 0.31 BTB/POZ/MATH-domains containing protein SRR1521947:GSM1441333: wt1; Arabidopsis thaliana; RNA-Seq AT2G39795.1 Arabidopsis thaliana 0.35 Mitochondrial glycoprotein family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G39800.1 Arabidopsis thaliana 0.38 delta1-pyrroline-5-carboxylate synthase 1 SRR446038:Vir.6h.B SRR446042:Avr.12h.B SRR446044:Vir.12h.B AT2G39800.4 Arabidopsis thaliana 0.35 delta1-pyrroline-5-carboxylate synthase 1 SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT2G39865.1 Arabidopsis thaliana 0.73 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G39890.2 Arabidopsis thaliana 0.80 proline transporter 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G39900.1 Arabidopsis thaliana 0.44 GATA type zinc finger transcription factor family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G39970.1 Arabidopsis thaliana 0.30 Mitochondrial substrate carrier family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT2G40004.1 Arabidopsis thaliana 0.42 Unknown SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G40060.1 Arabidopsis thaliana 0.37 Clathrin light chain protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G40090.1 Arabidopsis thaliana 0.68 ABC2 homolog 9 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G40100.2 Arabidopsis thaliana 0.90 light harvesting complex photosystem II SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq AT2G40113.1 Arabidopsis thaliana 0.46 Pollen Ole e 1 allergen and extensin family protein SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G40116.1 Arabidopsis thaliana 0.89 Phosphoinositide-specific phospholipase C family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G40130.1 Arabidopsis thaliana 0.70 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein SRR1061364:GSM1298732: L2_HiSeq; Arabidopsis thaliana; RNA-Seq SRR1061365:GSM1298733: L2_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT2G40140.1 Arabidopsis thaliana 0.32 zinc finger (CCCH-type) family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT2G40140.2 Arabidopsis thaliana 0.39 zinc finger (CCCH-type) family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G40233.1 Arabidopsis thaliana 0.34 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G40250.1 Arabidopsis thaliana 0.88 SGNH hydrolase-type esterase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G40316.2 Arabidopsis thaliana 0.33 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G40330.1 Arabidopsis thaliana 0.31 PYR1-like 6 SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR1260035:P-_hps7_R2 AT2G40340.1 Arabidopsis thaliana 0.77 Integrase-type DNA-binding superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G40470.1 Arabidopsis thaliana 0.54 LOB domain-containing protein 15 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT2G40475.1 Arabidopsis thaliana 0.47 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G40540.2 Arabidopsis thaliana 0.48 potassium transporter 2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G40560.1 Arabidopsis thaliana 0.80 Protein kinase superfamily protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G40580.1 Arabidopsis thaliana 0.50 Protein kinase superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G40620.1 Arabidopsis thaliana 0.32 Basic-leucine zipper (bZIP) transcription factor family protein SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G40640.2 Arabidopsis thaliana 0.38 RING/U-box superfamily protein SRR1652314:atrtf2-1 AT2G40670.1 Arabidopsis thaliana 0.53 response regulator 16 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT2G40690.1 Arabidopsis thaliana 0.48 NAD-dependent glycerol-3-phosphate dehydrogenase family protein SRR1652314:atrtf2-1 AT2G40740.1 Arabidopsis thaliana 0.48 WRKY DNA-binding protein 55 SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G40740.2 Arabidopsis thaliana 0.36 WRKY DNA-binding protein 55 SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G40800.1 Arabidopsis thaliana 0.36 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G40805.1 Arabidopsis thaliana 0.43 MIR319C; miRNA SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT2G40830.1 Arabidopsis thaliana 0.34 RING-H2 finger C1A ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G40830.2 Arabidopsis thaliana 0.45 RING-H2 finger C1A SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT2G40830.3 Arabidopsis thaliana 0.59 RING-H2 finger C1A SRR307074:GSM756824: Ler x Col endosperm RNA-seq AT2G40850.1 Arabidopsis thaliana 0.92 phosphoinositide 4-kinase gamma 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G40860.1 Arabidopsis thaliana 0.30 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein SRR1652314:atrtf2-1 SRR1652315:prp8-7 AT2G40880.1 Arabidopsis thaliana 0.63 cystatin A SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G40890.1 Arabidopsis thaliana 0.36 cytochrome P450, family 98, subfamily A, polypeptide 3 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT2G40935.3 Arabidopsis thaliana 0.61 PLAC8 family protein SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G40960.1 Arabidopsis thaliana 0.44 Single-stranded nucleic acid binding R3H protein SRR477079:GSM912638: pifq RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477080:GSM912639: pifq RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR477081:GSM912640: pifq;bzr1-1D RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477082:GSM912641: pifq;bzr1-1D RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT2G40970.1 Arabidopsis thaliana 0.49 Homeodomain-like superfamily protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G40990.1 Arabidopsis thaliana 0.81 DHHC-type zinc finger family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G40995.1 Arabidopsis thaliana 0.30 Molecular chaperone Hsp40/DnaJ family protein SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G41000.1 Arabidopsis thaliana 0.43 Chaperone DnaJ-domain superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G41000.2 Arabidopsis thaliana 0.42 Chaperone DnaJ-domain superfamily protein SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G41082.1 Arabidopsis thaliana 0.33 Unknown SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A AT2G41100.1 Arabidopsis thaliana 0.70 Calcium-binding EF hand family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G41140.1 Arabidopsis thaliana 0.46 CDPK-related kinase 1 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G41150.1 Arabidopsis thaliana 0.36 Unknown SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G41160.1 Arabidopsis thaliana 0.34 Ubiquitin-associated (UBA) protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G41190.1 Arabidopsis thaliana 0.61 Transmembrane amino acid transporter family protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT2G41200.1 Arabidopsis thaliana 0.59 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT2G41240.1 Arabidopsis thaliana 0.66 basic helix-loop-helix protein 100 SRR1652315:prp8-7 AT2G41240.2 Arabidopsis thaliana 0.48 basic helix-loop-helix protein 100 SRR1652315:prp8-7 AT2G41250.1 Arabidopsis thaliana 0.41 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR513743:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513744:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT2G41260.1 Arabidopsis thaliana 0.41 glycine-rich protein / late embryogenesis abundant protein (M17) SRR627655:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627656:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT2G41280.1 Arabidopsis thaliana 0.47 late embryogenesis abundant protein (M10) / LEA protein M10 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT2G41312.2 Arabidopsis thaliana 0.32 other RNA SRR974751:GSM1226367: mRNASS-L4h_2; Arabidopsis thaliana; RNA-Seq AT2G41330.1 Arabidopsis thaliana 0.45 Glutaredoxin family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G41370.1 Arabidopsis thaliana 0.32 Ankyrin repeat family protein / BTB/POZ domain-containing protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT2G41390.1 Arabidopsis thaliana 0.43 Pollen Ole e 1 allergen and extensin family protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G41440.1 Arabidopsis thaliana 0.46 Unknown SRR1046877:GSM1287142: Arabidopsis thaliana Rsch-4 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G41445.1 Arabidopsis thaliana 0.35 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G41450.2 Arabidopsis thaliana 0.36 N-acetyltransferases;N-acetyltransferases ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G41473.1 Arabidopsis thaliana 0.32 F-box family protein SRR364677:GFP sample AT2G41540.2 Arabidopsis thaliana 0.74 6-phosphogluconate dehydrogenase family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G41600.1 Arabidopsis thaliana 0.35 Mitochondrial glycoprotein family protein SRR1652314:atrtf2-1 AT2G41616.1 Arabidopsis thaliana 0.57 MIR778a; miRNA SRR364677:GFP sample AT2G41640.1 Arabidopsis thaliana 0.61 Glycosyltransferase family 61 protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G41660.1 Arabidopsis thaliana 0.32 Protein of unknown function, DUF617 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G41690.1 Arabidopsis thaliana 0.34 heat shock transcription factor B3 SRR1144845:be1-3 2 days on SIM AT2G41700.1 Arabidopsis thaliana 0.46 ATP-binding cassette A1 SRR988549:GSM1232785: WT_mRNA; Arabidopsis thaliana; RNA-Seq AT2G41700.2 Arabidopsis thaliana 0.31 ATP-binding cassette A1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G41705.1 Arabidopsis thaliana 0.33 camphor resistance CrcB family protein SRR1652314:atrtf2-1 AT2G41710.2 Arabidopsis thaliana 0.41 Integrase-type DNA-binding superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G41730.1 Arabidopsis thaliana 0.38 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G41780.2 Arabidopsis thaliana 0.40 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G41800.1 Arabidopsis thaliana 0.36 Protein of unknown function, DUF642 SRR364678:nonGFP sample ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G41810.1 Arabidopsis thaliana 0.34 Protein of unknown function, DUF642 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G41830.1 Arabidopsis thaliana 0.46 Uncharacterized protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G41860.1 Arabidopsis thaliana 0.70 calcium-dependent protein kinase 14 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G41860.2 Arabidopsis thaliana 0.69 calcium-dependent protein kinase 14 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G41905.1 Arabidopsis thaliana 0.89 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G41970.1 Arabidopsis thaliana 0.81 Protein kinase superfamily protein SRR364677:GFP sample AT2G42005.1 Arabidopsis thaliana 0.95 Transmembrane amino acid transporter family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G42030.1 Arabidopsis thaliana 0.66 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G42070.1 Arabidopsis thaliana 0.34 nudix hydrolase homolog 23 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G42080.1 Arabidopsis thaliana 0.34 Chaperone DnaJ-domain superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G42100.1 Arabidopsis thaliana 0.59 Actin-like ATPase superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G42120.1 Arabidopsis thaliana 0.36 DNA polymerase delta small subunit ERR351334:arabidopsis_thaliana_floral_meristem_atlas SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G42130.3 Arabidopsis thaliana 0.36 Plastid-lipid associated protein PAP / fibrillin family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G42240.1 Arabidopsis thaliana 0.40 RNA-binding (RRM/RBD/RNP motifs) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G42365.2 Arabidopsis thaliana 0.61 other RNA SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G42440.1 Arabidopsis thaliana 0.74 Lateral organ boundaries (LOB) domain family protein SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT2G42460.2 Arabidopsis thaliana 0.59 TRAF-like family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G42500.1 Arabidopsis thaliana 0.32 protein phosphatase 2A-3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G42540.1 Arabidopsis thaliana 0.55 cold-regulated 15a SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT2G42540.3 Arabidopsis thaliana 0.94 cold-regulated 15a SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G42560.1 Arabidopsis thaliana 0.43 late embryogenesis abundant domain-containing protein / LEA domain-containing protein SRR068978:GSM607730: Ler-WTxCol-met1_Endosperm SRR068979:GSM607730: Ler-WTxCol-met1_Endosperm AT2G42570.1 Arabidopsis thaliana 0.45 TRICHOME BIREFRINGENCE-LIKE 39 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G42610.2 Arabidopsis thaliana 0.38 Protein of unknown function (DUF640) SRR1257398:GSM1371360: mock T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G42640.1 Arabidopsis thaliana 0.36 Mitogen activated protein kinase kinase kinase-related SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G42830.1 Arabidopsis thaliana 0.43 K-box region and MADS-box transcription factor family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G42830.2 Arabidopsis thaliana 0.41 K-box region and MADS-box transcription factor family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G42835.1 Arabidopsis thaliana 0.40 other RNA SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G42840.1 Arabidopsis thaliana 0.54 protodermal factor 1 SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo AT2G42850.1 Arabidopsis thaliana 0.74 cytochrome P450, family 718 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G42890.2 Arabidopsis thaliana 0.33 MEI2-like 2 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT2G42980.1 Arabidopsis thaliana 0.76 Eukaryotic aspartyl protease family protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT2G42990.1 Arabidopsis thaliana 0.33 GDSL-like Lipase/Acylhydrolase superfamily protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT2G43000.1 Arabidopsis thaliana 0.33 NAC domain containing protein 42 SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G43040.1 Arabidopsis thaliana 0.50 tetratricopeptide repeat (TPR)-containing protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43060.1 Arabidopsis thaliana 0.84 ILI1 binding bHLH 1 SRR1001901:GSM1239079: IBH1 overexpression #1; Arabidopsis thaliana; RNA-Seq SRR1001902:GSM1239080: IBH1 overexpression #2; Arabidopsis thaliana; RNA-Seq AT2G43100.1 Arabidopsis thaliana 0.44 isopropylmalate isomerase 2 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT2G43120.1 Arabidopsis thaliana 0.44 RmlC-like cupins superfamily protein SRR364677:GFP sample SRR364678:nonGFP sample AT2G43138.1 Arabidopsis thaliana 0.63 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G43139.1 Arabidopsis thaliana 0.53 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G43140.1 Arabidopsis thaliana 0.32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G43141.1 Arabidopsis thaliana 0.52 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G43180.2 Arabidopsis thaliana 0.76 Phosphoenolpyruvate carboxylase family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G43220.1 Arabidopsis thaliana 0.72 Cysteine/Histidine-rich C1 domain family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G43230.1 Arabidopsis thaliana 0.92 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G43260.1 Arabidopsis thaliana 0.36 F-box and associated interaction domains-containing protein SRR1652314:atrtf2-1 AT2G43261.1 Arabidopsis thaliana 0.32 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G43290.1 Arabidopsis thaliana 0.30 Calcium-binding EF-hand family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G43300.1 Arabidopsis thaliana 0.72 pre-tRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT2G43320.2 Arabidopsis thaliana 0.32 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT2G43340.1 Arabidopsis thaliana 0.51 Protein of unknown function (DUF1685) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43350.1 Arabidopsis thaliana 0.32 glutathione peroxidase 3 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G43371.1 Arabidopsis thaliana 0.84 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G43375.1 Arabidopsis thaliana 0.50 other RNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G43390.1 Arabidopsis thaliana 0.34 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G43465.1 Arabidopsis thaliana 0.66 RNA-binding ASCH domain protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G43470.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF3755) SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G43480.1 Arabidopsis thaliana 0.85 Peroxidase superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43490.2 Arabidopsis thaliana 0.34 Ypt/Rab-GAP domain of gyp1p superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43490.6 Arabidopsis thaliana 0.46 Ypt/Rab-GAP domain of gyp1p superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43510.1 Arabidopsis thaliana 0.33 trypsin inhibitor protein 1 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT2G43535.1 Arabidopsis thaliana 0.53 Scorpion toxin-like knottin superfamily protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT2G43540.1 Arabidopsis thaliana 0.31 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G43580.1 Arabidopsis thaliana 0.32 Chitinase family protein SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT2G43600.1 Arabidopsis thaliana 0.45 Chitinase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43610.1 Arabidopsis thaliana 0.74 Chitinase family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43620.1 Arabidopsis thaliana 0.62 Chitinase family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT2G43710.1 Arabidopsis thaliana 0.31 Plant stearoyl-acyl-carrier-protein desaturase family protein ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT2G43790.1 Arabidopsis thaliana 0.31 MAP kinase 6 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G43795.2 Arabidopsis thaliana 0.33 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT2G43820.1 Arabidopsis thaliana 0.32 UDP-glucosyltransferase 74F2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43840.2 Arabidopsis thaliana 0.35 UDP-glycosyltransferase 74 F1 SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT2G43850.1 Arabidopsis thaliana 0.32 Integrin-linked protein kinase family ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43860.1 Arabidopsis thaliana 0.70 Pectin lyase-like superfamily protein SRR1144842:be1-3 7 days on CIM AT2G43865.1 Arabidopsis thaliana 0.64 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G43871.1 Arabidopsis thaliana 0.37 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G43880.1 Arabidopsis thaliana 0.33 Pectin lyase-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43890.1 Arabidopsis thaliana 0.57 Pectin lyase-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G43900.1 Arabidopsis thaliana 0.44 Endonuclease/exonuclease/phosphatase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G43910.2 Arabidopsis thaliana 0.45 HARMLESS TO OZONE LAYER 1 SRR1046848:GSM1287113: Arabidopsis thaliana Bur-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G43910.3 Arabidopsis thaliana 0.35 HARMLESS TO OZONE LAYER 1 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G43920.3 Arabidopsis thaliana 0.86 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G43932.1 Arabidopsis thaliana 0.77 Unknown SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT2G43990.1 Arabidopsis thaliana 0.33 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G44060.2 Arabidopsis thaliana 0.41 Late embryogenesis abundant protein, group 2 SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT2G44070.1 Arabidopsis thaliana 0.46 NagB/RpiA/CoA transferase-like superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G44090.2 Arabidopsis thaliana 0.48 Ankyrin repeat family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G44110.2 Arabidopsis thaliana 0.44 Seven transmembrane MLO family protein SRR364677:GFP sample AT2G44140.1 Arabidopsis thaliana 0.31 Peptidase family C54 protein SRR1652314:atrtf2-1 AT2G44140.2 Arabidopsis thaliana 0.52 Peptidase family C54 protein SRR627669:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627670:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq AT2G44170.1 Arabidopsis thaliana 0.61 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G44198.1 Arabidopsis thaliana 0.50 Unknown SRR627634:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq AT2G44230.1 Arabidopsis thaliana 0.38 Plant protein of unknown function (DUF946) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G44240.1 Arabidopsis thaliana 0.33 Protein of Unknown Function (DUF239) SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT2G44250.1 Arabidopsis thaliana 0.33 Protein of Unknown Function (DUF239) SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G44304.1 Arabidopsis thaliana 0.46 Unknown SRR949988:early shade responses in Arabidopsis adult plants (Col, 4 hr sun) AT2G44460.1 Arabidopsis thaliana 0.65 beta glucosidase 28 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G44500.1 Arabidopsis thaliana 0.63 O-fucosyltransferase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G44500.2 Arabidopsis thaliana 0.53 O-fucosyltransferase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G44560.1 Arabidopsis thaliana 0.88 glycosyl hydrolase 9B11 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G44700.1 Arabidopsis thaliana 0.37 Galactose oxidase/kelch repeat superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G44735.1 Arabidopsis thaliana 0.53 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G44740.1 Arabidopsis thaliana 0.36 cyclin p4;1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G44780.1 Arabidopsis thaliana 0.54 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G44798.1 Arabidopsis thaliana 0.36 other RNA SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT2G44798.2 Arabidopsis thaliana 0.47 Unknown SRR345564:GSM798298: mRNASeq_skip_rep2 SRR1019442:GSM1252268: iaa3 + BR RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019443:GSM1252269: iaa3 + BR RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT2G44850.2 Arabidopsis thaliana 0.40 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT2G44860.2 Arabidopsis thaliana 0.45 Ribosomal protein L24e family protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT2G44925.1 Arabidopsis thaliana 0.34 Unknown SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 AT2G45010.1 Arabidopsis thaliana 0.31 PLAC8 family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G45010.2 Arabidopsis thaliana 0.55 PLAC8 family protein SRR1652314:atrtf2-1 AT2G45023.2 Arabidopsis thaliana 0.50 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT2G45060.1 Arabidopsis thaliana 0.57 Uncharacterised conserved protein UCP022280 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G45070.2 Arabidopsis thaliana 0.35 Preprotein translocase Sec, Sec61-beta subunit protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G45110.1 Arabidopsis thaliana 0.39 expansin B4 SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT2G45126.1 Arabidopsis thaliana 0.59 Unknown SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G45140.1 Arabidopsis thaliana 0.41 plant VAP homolog 12 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G45150.3 Arabidopsis thaliana 0.30 cytidinediphosphate diacylglycerol synthase 4 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G45161.1 Arabidopsis thaliana 0.80 Unknown SRR364677:GFP sample AT2G45170.1 Arabidopsis thaliana 0.63 AUTOPHAGY 8E SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G45170.2 Arabidopsis thaliana 0.53 AUTOPHAGY 8E SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT2G45200.2 Arabidopsis thaliana 0.39 golgi snare 12 SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G45310.1 Arabidopsis thaliana 0.91 UDP-D-glucuronate 4-epimerase 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G45315.1 Arabidopsis thaliana 0.86 other RNA SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G45315.2 Arabidopsis thaliana 0.75 other RNA SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G45360.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF1442) SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT2G45403.1 Arabidopsis thaliana 0.66 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G45410.1 Arabidopsis thaliana 0.54 LOB domain-containing protein 19 SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT2G45434.1 Arabidopsis thaliana 0.30 Unknown SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT2G45440.1 Arabidopsis thaliana 0.33 dihydrodipicolinate synthase SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G45470.1 Arabidopsis thaliana 0.45 FASCICLIN-like arabinogalactan protein 8 SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT2G45550.1 Arabidopsis thaliana 0.32 cytochrome P450, family 76, subfamily C, polypeptide 4 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT2G45580.1 Arabidopsis thaliana 0.54 cytochrome P450, family 76, subfamily C, polypeptide 3 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G45630.1 Arabidopsis thaliana 0.38 D-isomer specific 2-hydroxyacid dehydrogenase family protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT2G45640.2 Arabidopsis thaliana 0.48 SIN3 associated polypeptide P18 SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G45670.2 Arabidopsis thaliana 0.38 calcineurin B subunit-related SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT2G45685.1 Arabidopsis thaliana 0.41 other RNA SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G45700.1 Arabidopsis thaliana 0.75 sterile alpha motif (SAM) domain-containing protein SRR1652314:atrtf2-1 AT2G45740.1 Arabidopsis thaliana 0.40 peroxin 11D SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT2G45800.1 Arabidopsis thaliana 0.75 GATA type zinc finger transcription factor family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G45810.1 Arabidopsis thaliana 0.59 DEA(D/H)-box RNA helicase family protein SRR1652314:atrtf2-1 AT2G45890.1 Arabidopsis thaliana 0.76 RHO guanyl-nucleotide exchange factor 4 SRR364677:GFP sample AT2G45960.2 Arabidopsis thaliana 0.30 plasma membrane intrinsic protein 1B SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq AT2G45990.2 Arabidopsis thaliana 0.82 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G45990.3 Arabidopsis thaliana 0.41 Unknown SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT2G46000.1 Arabidopsis thaliana 0.41 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G46060.1 Arabidopsis thaliana 0.62 transmembrane protein-related SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT2G46070.1 Arabidopsis thaliana 0.55 mitogen-activated protein kinase 12 SRR826412:Sample Control BR5 AT2G46140.1 Arabidopsis thaliana 0.45 Late embryogenesis abundant protein SRR364677:GFP sample SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G46170.1 Arabidopsis thaliana 0.31 Reticulon family protein SRR364677:GFP sample AT2G46192.1 Arabidopsis thaliana 0.48 other RNA SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT2G46210.1 Arabidopsis thaliana 0.91 Fatty acid/sphingolipid desaturase SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G46240.1 Arabidopsis thaliana 0.35 BCL-2-associated athanogene 6 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT2G46255.1 Arabidopsis thaliana 0.55 MIR159C; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G46260.1 Arabidopsis thaliana 0.72 BTB/POZ/Kelch-associated protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G46280.3 Arabidopsis thaliana 0.36 TGF-beta receptor interacting protein 1 SRR1144843:WS 7 days on CIM AT2G46300.1 Arabidopsis thaliana 0.76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G46320.2 Arabidopsis thaliana 0.32 Mitochondrial substrate carrier family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT2G46360.1 Arabidopsis thaliana 0.89 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G46370.1 Arabidopsis thaliana 0.86 Auxin-responsive GH3 family protein SRR446028:Mock.1h.B AT2G46490.1 Arabidopsis thaliana 0.30 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G46495.1 Arabidopsis thaliana 0.50 RING/U-box superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G46500.1 Arabidopsis thaliana 0.79 phosphoinositide 4-kinase gamma 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G46560.1 Arabidopsis thaliana 0.33 transducin family protein / WD-40 repeat family protein SRR1652314:atrtf2-1 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT2G46567.1 Arabidopsis thaliana 0.63 Unknown SRR1257393:GSM1371355: mock NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT2G46590.2 Arabidopsis thaliana 0.35 Dof-type zinc finger DNA-binding family protein SRR1144842:be1-3 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT2G46662.1 Arabidopsis thaliana 0.38 Unknown SRR978413:18O at 0mm 24hr SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT2G46680.1 Arabidopsis thaliana 0.45 homeobox 7 SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT2G46680.2 Arabidopsis thaliana 0.46 homeobox 7 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT2G46740.1 Arabidopsis thaliana 0.48 D-arabinono-1,4-lactone oxidase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G46760.1 Arabidopsis thaliana 0.30 D-arabinono-1,4-lactone oxidase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G46780.1 Arabidopsis thaliana 0.32 RNA-binding (RRM/RBD/RNP motifs) family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT2G46787.1 Arabidopsis thaliana 0.69 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT2G46790.2 Arabidopsis thaliana 0.37 pseudo-response regulator 9 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq AT2G46850.1 Arabidopsis thaliana 0.66 Protein kinase superfamily protein SRR1144843:WS 7 days on CIM AT2G46860.1 Arabidopsis thaliana 0.54 pyrophosphorylase 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G46940.1 Arabidopsis thaliana 0.30 Unknown SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G46980.3 Arabidopsis thaliana 0.35 Unknown SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G46995.1 Arabidopsis thaliana 0.54 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G47000.1 Arabidopsis thaliana 0.36 ATP binding cassette subfamily B4 SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G47020.1 Arabidopsis thaliana 0.42 Peptide chain release factor 1 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT2G47020.2 Arabidopsis thaliana 0.57 Peptide chain release factor 1 SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT2G47030.1 Arabidopsis thaliana 0.93 Plant invertase/pectin methylesterase inhibitor superfamily SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G47040.1 Arabidopsis thaliana 0.92 Plant invertase/pectin methylesterase inhibitor superfamily SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G47050.1 Arabidopsis thaliana 0.90 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G47130.1 Arabidopsis thaliana 0.35 NAD(P)-binding Rossmann-fold superfamily protein SRR446035:Avr.6h.A AT2G47140.1 Arabidopsis thaliana 0.61 NAD(P)-binding Rossmann-fold superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G47160.2 Arabidopsis thaliana 0.46 HCO3- transporter family SRR1652314:atrtf2-1 AT2G47180.1 Arabidopsis thaliana 0.30 galactinol synthase 1 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT2G47270.1 Arabidopsis thaliana 0.37 sequence-specific DNA binding transcription factors;transcription regulators SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G47275.1 Arabidopsis thaliana 0.40 MIR403; miRNA SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT2G47340.1 Arabidopsis thaliana 0.79 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT2G47380.1 Arabidopsis thaliana 0.32 Cytochrome c oxidase subunit Vc family protein SRR345563:GSM798297: mRNASeq_skip_rep1 AT2G47430.1 Arabidopsis thaliana 0.37 Signal transduction histidine kinase SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G47470.2 Arabidopsis thaliana 0.59 thioredoxin family protein SRR515328:GSM951354: RVE8:GR_mock_3; Arabidopsis thaliana; RNA-Seq AT2G47510.2 Arabidopsis thaliana 0.32 fumarase 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT2G47540.1 Arabidopsis thaliana 0.31 Pollen Ole e 1 allergen and extensin family protein SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT2G47560.1 Arabidopsis thaliana 0.56 RING/U-box superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT2G47570.1 Arabidopsis thaliana 0.61 Ribosomal protein L18e/L15 superfamily protein SRR1046882:GSM1287147: Arabidopsis thaliana Sf-2 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT2G47570.2 Arabidopsis thaliana 0.44 Ribosomal protein L18e/L15 superfamily protein SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT2G47580.1 Arabidopsis thaliana 0.32 spliceosomal protein U1A SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq AT2G47585.1 Arabidopsis thaliana 0.38 MIR164/MIR164A; miRNA SRR1013885:responses to BL AT2G47600.1 Arabidopsis thaliana 0.56 magnesium/proton exchanger SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT2G47630.1 Arabidopsis thaliana 0.33 alpha/beta-Hydrolases superfamily protein SRR1207199:GSM1359151: 35S:NGA 1; Arabidopsis thaliana; RNA-Seq SRR1207201:GSM1359153: 35S:NGA 3; Arabidopsis thaliana; RNA-Seq AT2G47640.1 Arabidopsis thaliana 0.48 Small nuclear ribonucleoprotein family protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT2G47640.3 Arabidopsis thaliana 0.57 Small nuclear ribonucleoprotein family protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT2G47640.4 Arabidopsis thaliana 0.54 Small nuclear ribonucleoprotein family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT2G47660.1 Arabidopsis thaliana 0.43 Unknown SRR392126:GSM852816: mRNA-seq in flc, technical replicate 1; Arabidopsis thaliana; RNA-Seq ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT2G47670.1 Arabidopsis thaliana 0.33 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR1058111:GSM1297913: at-seed-ler_wt_x_col_wt 2; Arabidopsis thaliana; RNA-Seq SRR1058118:GSM1297920: at-seed-ler_wt_x_col_met 3; Arabidopsis thaliana; RNA-Seq AT2G47690.2 Arabidopsis thaliana 0.42 NADH-ubiquinone oxidoreductase-related SRR345564:GSM798298: mRNASeq_skip_rep2 AT2G47750.1 Arabidopsis thaliana 0.34 putative indole-3-acetic acid-amido synthetase GH3.9 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT2G47770.1 Arabidopsis thaliana 0.42 TSPO(outer membrane tryptophan-rich sensory protein)-related SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT2G47810.1 Arabidopsis thaliana 0.63 nuclear factor Y, subunit B5 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT2G47860.2 Arabidopsis thaliana 0.31 Phototropic-responsive NPH3 family protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT2G47890.1 Arabidopsis thaliana 0.33 B-box type zinc finger protein with CCT domain SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT2G47940.1 Arabidopsis thaliana 0.44 DEGP protease 2 SRR1652314:atrtf2-1 AT2G48070.2 Arabidopsis thaliana 0.45 resistance to phytophthora 1 SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. AT2G48100.1 Arabidopsis thaliana 0.35 Exonuclease family protein SRR1652314:atrtf2-1 AT2G48121.1 Arabidopsis thaliana 0.32 Unknown SRR1548696:GSM1477541: WT C24 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548697:GSM1477542: WT C24 rep 2,2; Arabidopsis thaliana; RNA-Seq SRR1548700:GSM1477545: lsm5/sad1 rep 1,1; Arabidopsis thaliana; RNA-Seq SRR1548701:GSM1477546: lsm5/sad1 rep 1,2; Arabidopsis thaliana; RNA-Seq SRR1548702:GSM1477547: lsm5/sad1 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548703:GSM1477548: lsm5/sad1 rep 2,2; Arabidopsis thaliana; RNA-Seq AT2G48140.2 Arabidopsis thaliana 0.40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT2G48150.1 Arabidopsis thaliana 0.62 glutathione peroxidase 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01020.1 Arabidopsis thaliana 0.60 ISCU-like 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01060.2 Arabidopsis thaliana 0.73 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G01085.1 Arabidopsis thaliana 0.83 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01142.1 Arabidopsis thaliana 0.42 other RNA SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G01150.1 Arabidopsis thaliana 0.73 polypyrimidine tract-binding protein 1 SRR584132:GSM1017173: PTB_OE1_R1; Arabidopsis thaliana; RNA-Seq SRR584136:GSM1017177: PTB_OE1_R2; Arabidopsis thaliana; RNA-Seq AT3G01185.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF784) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq AT3G01190.1 Arabidopsis thaliana 0.76 Peroxidase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G01210.1 Arabidopsis thaliana 0.50 RNA-binding (RRM/RBD/RNP motifs) family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G01220.1 Arabidopsis thaliana 0.54 homeobox protein 20 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G01230.1 Arabidopsis thaliana 0.87 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01240.1 Arabidopsis thaliana 0.67 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01250.1 Arabidopsis thaliana 0.63 Unknown SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G01270.1 Arabidopsis thaliana 0.94 Pectate lyase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01310.2 Arabidopsis thaliana 0.43 Phosphoglycerate mutase-like family protein SRR1652314:atrtf2-1 AT3G01313.1 Arabidopsis thaliana 0.49 snoRNA SRR345564:GSM798298: mRNASeq_skip_rep2 SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G01316.1 Arabidopsis thaliana 0.37 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G01330.1 Arabidopsis thaliana 0.34 DP-E2F-like protein 3 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G01360.2 Arabidopsis thaliana 0.52 Family of unknown function (DUF716) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G01370.1 Arabidopsis thaliana 0.33 CRM family member 2 SRR1652314:atrtf2-1 AT3G01480.2 Arabidopsis thaliana 0.60 cyclophilin 38 SRR1652314:atrtf2-1 AT3G01490.1 Arabidopsis thaliana 0.47 Protein kinase superfamily protein SRR1652314:atrtf2-1 AT3G01513.1 Arabidopsis thaliana 0.68 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G01530.1 Arabidopsis thaliana 0.35 myb domain protein 57 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G01540.2 Arabidopsis thaliana 0.36 DEAD box RNA helicase 1 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 AT3G01572.1 Arabidopsis thaliana 0.30 Unknown SRR1652315:prp8-7 AT3G01600.1 Arabidopsis thaliana 0.41 NAC domain containing protein 44 SRR1144842:be1-3 7 days on CIM AT3G01620.1 Arabidopsis thaliana 0.81 beta-1,4-N-acetylglucosaminyltransferase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01630.1 Arabidopsis thaliana 0.93 Major facilitator superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01650.1 Arabidopsis thaliana 0.41 RING domain ligase1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G01660.1 Arabidopsis thaliana 0.48 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G01700.1 Arabidopsis thaliana 0.94 arabinogalactan protein 11 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01710.2 Arabidopsis thaliana 0.37 TPX2 (targeting protein for Xklp2) protein family SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) SRR307072:GSM756823: Ler x Col embryo RNA-seq AT3G01760.1 Arabidopsis thaliana 0.54 Transmembrane amino acid transporter family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G01830.2 Arabidopsis thaliana 0.36 Calcium-binding EF-hand family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G01870.1 Arabidopsis thaliana 0.76 Plant protein of unknown function (DUF946) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G01930.1 Arabidopsis thaliana 0.53 Major facilitator superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G01970.1 Arabidopsis thaliana 0.37 WRKY DNA-binding protein 45 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT3G01980.2 Arabidopsis thaliana 0.33 NAD(P)-binding Rossmann-fold superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G02000.1 Arabidopsis thaliana 0.31 Thioredoxin superfamily protein SRR1039920:GSM1276507: CvixCol_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G02070.1 Arabidopsis thaliana 0.39 Cysteine proteinases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G02090.2 Arabidopsis thaliana 0.52 Insulinase (Peptidase family M16) protein SRR609270:GSM1025550: mos2-2 rep2; Arabidopsis thaliana; RNA-Seq AT3G02140.1 Arabidopsis thaliana 0.49 AFP2 (ABI five-binding protein 2) family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G02180.3 Arabidopsis thaliana 0.75 SPIRAL1-like3 SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G02230.1 Arabidopsis thaliana 0.35 reversibly glycosylated polypeptide 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G02250.1 Arabidopsis thaliana 0.37 O-fucosyltransferase family protein SRR1652314:atrtf2-1 AT3G02280.1 Arabidopsis thaliana 0.57 Flavodoxin family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G02370.2 Arabidopsis thaliana 0.38 Unknown SRR402995:GSM867675: Col_PAC_GA; Arabidopsis thaliana; RNA-Seq AT3G02390.1 Arabidopsis thaliana 0.31 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G02410.1 Arabidopsis thaliana 0.80 alpha/beta-Hydrolases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G02410.2 Arabidopsis thaliana 0.37 alpha/beta-Hydrolases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G02440.1 Arabidopsis thaliana 0.42 TRICHOME BIREFRINGENCE-LIKE 20 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G02460.2 Arabidopsis thaliana 0.43 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR513730:5dpi Pst(avrPphB) Col-0 mRNA-Seq, run 2, Bioreplicate 1 AT3G02468.1 Arabidopsis thaliana 0.32 conserved peptide upstream open reading frame 9 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G02470.4 Arabidopsis thaliana 0.30 S-adenosylmethionine decarboxylase SRR345562:GSM798296: mRNASeq_WT_rep2 SRR953401:GSM1210578: silique; Arabidopsis thaliana; RNA-Seq AT3G02480.1 Arabidopsis thaliana 0.44 Late embryogenesis abundant protein (LEA) family protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G02493.1 Arabidopsis thaliana 0.38 ROTUNDIFOLIA like 19 SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT3G02500.1 Arabidopsis thaliana 0.62 Unknown SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq AT3G02540.2 Arabidopsis thaliana 0.42 Rad23 UV excision repair protein family SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G02540.3 Arabidopsis thaliana 0.46 Rad23 UV excision repair protein family SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT3G02550.1 Arabidopsis thaliana 0.31 LOB domain-containing protein 41 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G02555.1 Arabidopsis thaliana 0.83 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G02560.2 Arabidopsis thaliana 0.48 Ribosomal protein S7e family protein SRR627652:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq AT3G02570.1 Arabidopsis thaliana 0.31 Mannose-6-phosphate isomerase, type I SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT3G02580.1 Arabidopsis thaliana 0.59 sterol 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G02600.3 Arabidopsis thaliana 0.32 lipid phosphate phosphatase 3 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G02640.1 Arabidopsis thaliana 0.36 Unknown SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G02670.1 Arabidopsis thaliana 0.45 Glycine-rich protein family SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 AT3G02720.1 Arabidopsis thaliana 0.36 Class I glutamine amidotransferase-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G02740.1 Arabidopsis thaliana 0.57 Eukaryotic aspartyl protease family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G02750.1 Arabidopsis thaliana 0.39 Protein phosphatase 2C family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G02800.1 Arabidopsis thaliana 0.60 Tyrosine phosphatase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G02810.1 Arabidopsis thaliana 0.89 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G02820.1 Arabidopsis thaliana 0.37 zinc knuckle (CCHC-type) family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G02832.1 Arabidopsis thaliana 0.48 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G02850.1 Arabidopsis thaliana 0.40 STELAR K+ outward rectifier SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G02885.1 Arabidopsis thaliana 0.45 GAST1 protein homolog 5 SRR1144842:be1-3 7 days on CIM AT3G02910.1 Arabidopsis thaliana 0.51 AIG2-like (avirulence induced gene) family protein SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A AT3G02920.1 Arabidopsis thaliana 0.34 Replication protein A, subunit RPA32 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G02940.1 Arabidopsis thaliana 0.32 myb domain protein 107 ERR588043:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588048:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588049:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588044:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588046:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G02970.1 Arabidopsis thaliana 0.93 EXORDIUM like 6 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G02990.1 Arabidopsis thaliana 0.39 heat shock transcription factor A1E SRR364678:nonGFP sample AT3G03040.1 Arabidopsis thaliana 0.40 F-box/RNI-like superfamily protein SRR1652314:atrtf2-1 AT3G03050.1 Arabidopsis thaliana 0.56 cellulose synthase-like D3 SRR364677:GFP sample AT3G03080.1 Arabidopsis thaliana 0.32 Zinc-binding dehydrogenase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G03090.1 Arabidopsis thaliana 0.78 vacuolar glucose transporter 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G03200.1 Arabidopsis thaliana 0.54 NAC domain containing protein 45 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G03250.1 Arabidopsis thaliana 0.40 UDP-GLUCOSE PYROPHOSPHORYLASE 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G03270.1 Arabidopsis thaliana 0.39 Adenine nucleotide alpha hydrolases-like superfamily protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G03270.2 Arabidopsis thaliana 0.35 Adenine nucleotide alpha hydrolases-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G03280.1 Arabidopsis thaliana 0.43 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G03290.1 Arabidopsis thaliana 0.43 Adenine nucleotide alpha hydrolases-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G03300.3 Arabidopsis thaliana 0.36 dicer-like 2 SRR1652314:atrtf2-1 AT3G03341.1 Arabidopsis thaliana 0.35 Unknown SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G03400.1 Arabidopsis thaliana 0.49 EF hand calcium-binding protein family SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G03410.1 Arabidopsis thaliana 0.31 EF hand calcium-binding protein family SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G03430.1 Arabidopsis thaliana 0.79 Calcium-binding EF-hand family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G03440.1 Arabidopsis thaliana 0.36 ARM repeat superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G03456.1 Arabidopsis thaliana 0.35 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas SRR1046875:GSM1287140: Arabidopsis thaliana Po-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1260037:P+_hps7_R2 SRR493043:GSM925651: SDC::GFP mRNA EMS batch 2; Arabidopsis thaliana; RNA-Seq AT3G03500.1 Arabidopsis thaliana 0.43 TatD related DNase SRR364678:nonGFP sample AT3G03540.1 Arabidopsis thaliana 0.40 non-specific phospholipase C5 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G03560.1 Arabidopsis thaliana 0.42 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G03570.1 Arabidopsis thaliana 0.44 Protein of unknown function (DUF3550/UPF0682) SRR1652314:atrtf2-1 AT3G03626.1 Arabidopsis thaliana 0.89 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G03660.1 Arabidopsis thaliana 0.31 WUSCHEL related homeobox 11 SRR1144842:be1-3 7 days on CIM AT3G03660.2 Arabidopsis thaliana 0.31 WUSCHEL related homeobox 11 SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR1144842:be1-3 7 days on CIM AT3G03780.2 Arabidopsis thaliana 0.34 methionine synthase 2 SRR525137:GSM969685: MLA1 expressing plants challenged with Bgh K1 isolate at 24hpi, replicate 2; Arabidopsis thaliana; RNA-Seq SRR525138:GSM969685: MLA1 expressing plants challenged with Bgh K1 isolate at 24hpi, replicate 2; Arabidopsis thaliana; RNA-Seq AT3G03800.1 Arabidopsis thaliana 0.89 syntaxin of plants 131 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G03826.1 Arabidopsis thaliana 0.53 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G03870.1 Arabidopsis thaliana 0.53 Unknown SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT3G03950.1 Arabidopsis thaliana 0.39 evolutionarily conserved C-terminal region 1 SRR1144843:WS 7 days on CIM AT3G04000.1 Arabidopsis thaliana 0.46 NAD(P)-binding Rossmann-fold superfamily protein SRR446044:Vir.12h.B AT3G04010.1 Arabidopsis thaliana 0.54 O-Glycosyl hydrolases family 17 protein SRR364677:GFP sample AT3G04030.2 Arabidopsis thaliana 0.59 Homeodomain-like superfamily protein SRR513730:5dpi Pst(avrPphB) Col-0 mRNA-Seq, run 2, Bioreplicate 1 AT3G04030.3 Arabidopsis thaliana 0.45 Homeodomain-like superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT3G04070.1 Arabidopsis thaliana 0.36 NAC domain containing protein 47 SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT3G04090.1 Arabidopsis thaliana 0.33 small and basic intrinsic protein 1A ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G04100.1 Arabidopsis thaliana 0.77 AGAMOUS-like 57 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G04120.1 Arabidopsis thaliana 0.38 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G04130.2 Arabidopsis thaliana 0.47 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT3G04150.1 Arabidopsis thaliana 0.52 RmlC-like cupins superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G04150.2 Arabidopsis thaliana 0.49 RmlC-like cupins superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G04170.1 Arabidopsis thaliana 0.58 RmlC-like cupins superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G04180.1 Arabidopsis thaliana 0.54 RmlC-like cupins superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G04184.1 Arabidopsis thaliana 0.35 Unknown SRR1652314:atrtf2-1 AT3G04220.1 Arabidopsis thaliana 0.68 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G04270.1 Arabidopsis thaliana 0.41 Unknown SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq AT3G04280.1 Arabidopsis thaliana 0.37 response regulator 22 SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT3G04290.1 Arabidopsis thaliana 0.54 Li-tolerant lipase 1 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G04320.1 Arabidopsis thaliana 0.66 Kunitz family trypsin and protease inhibitor protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G04330.1 Arabidopsis thaliana 0.43 Kunitz family trypsin and protease inhibitor protein SRR364678:nonGFP sample AT3G04360.1 Arabidopsis thaliana 0.88 Calcium-dependent lipid-binding (CaLB domain) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G04410.1 Arabidopsis thaliana 0.89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein SRR1257391:GSM1371353: infected Col0 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G04420.2 Arabidopsis thaliana 0.36 NAC domain containing protein 48 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G04445.1 Arabidopsis thaliana 0.55 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G04460.1 Arabidopsis thaliana 0.45 peroxin-12 SRR1652314:atrtf2-1 AT3G04525.1 Arabidopsis thaliana 0.33 pre-tRNA SRR671946:GSM1077432: Root_polyA_KCl_Control_rep1; Arabidopsis thaliana; RNA-Seq AT3G04550.1 Arabidopsis thaliana 0.36 Unknown SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G04600.2 Arabidopsis thaliana 0.41 Nucleotidylyl transferase superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G04620.1 Arabidopsis thaliana 0.35 Alba DNA/RNA-binding protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G04630.1 Arabidopsis thaliana 0.57 WVD2-like 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G04630.3 Arabidopsis thaliana 0.59 WVD2-like 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G04640.3 Arabidopsis thaliana 0.44 glycine-rich protein SRR1005389:GSM1242378: cmt2_mRNA_rep1; Arabidopsis thaliana; RNA-Seq AT3G04690.1 Arabidopsis thaliana 0.35 Malectin/receptor-like protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G04700.1 Arabidopsis thaliana 0.89 Protein of unknown function (DUF1685) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G04715.1 Arabidopsis thaliana 0.76 Unknown SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression AT3G04717.1 Arabidopsis thaliana 0.32 Unknown SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G04735.1 Arabidopsis thaliana 0.45 RALF-like 21 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT3G04800.1 Arabidopsis thaliana 0.31 translocase inner membrane subunit 23-3 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G04854.1 Arabidopsis thaliana 0.89 Unknown SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT3G04870.2 Arabidopsis thaliana 0.39 zeta-carotene desaturase SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G04900.1 Arabidopsis thaliana 0.71 Heavy metal transport/detoxification superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G04903.1 Arabidopsis thaliana 0.34 Defensin-like (DEFL) family protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT3G04910.2 Arabidopsis thaliana 0.31 with no lysine (K) kinase 1 SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT3G04945.1 Arabidopsis thaliana 0.44 low-molecular-weight cysteine-rich 18 SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G04950.1 Arabidopsis thaliana 0.44 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G04970.2 Arabidopsis thaliana 0.45 DHHC-type zinc finger family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G05090.2 Arabidopsis thaliana 0.30 Transducin/WD40 repeat-like superfamily protein SRR1652314:atrtf2-1 AT3G05100.1 Arabidopsis thaliana 0.34 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G05110.1 Arabidopsis thaliana 0.47 Domain of unknown function (DUF3444) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G05140.1 Arabidopsis thaliana 0.55 ROP binding protein kinases 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G05150.1 Arabidopsis thaliana 0.33 Major facilitator superfamily protein SRR1019438:GSM1252264: Col-0 + BR RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019439:GSM1252265: Col-0 + BR RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G05165.4 Arabidopsis thaliana 0.31 Major facilitator superfamily protein SRR609415:RNAseq data from activation tagging mutant of OSD1 in bon1-2 AT3G05190.1 Arabidopsis thaliana 0.31 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G05210.1 Arabidopsis thaliana 0.37 nucleotide repair protein, putative ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G05250.1 Arabidopsis thaliana 0.45 RING/U-box superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G05270.1 Arabidopsis thaliana 0.58 Plant protein of unknown function (DUF869) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G05270.2 Arabidopsis thaliana 0.30 Plant protein of unknown function (DUF869) SRR976163:APX20 at 50mm 24hr AT3G05320.1 Arabidopsis thaliana 0.47 O-fucosyltransferase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G05390.1 Arabidopsis thaliana 0.37 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G05425.1 Arabidopsis thaliana 0.64 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G05520.2 Arabidopsis thaliana 0.37 Subunits of heterodimeric actin filament capping protein Capz superfamily SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT3G05525.1 Arabidopsis thaliana 0.32 pre-tRNA SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 AT3G05580.1 Arabidopsis thaliana 0.57 Calcineurin-like metallo-phosphoesterase superfamily protein SRR364677:GFP sample AT3G05602.1 Arabidopsis thaliana 0.84 Unknown SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G05610.1 Arabidopsis thaliana 0.95 Plant invertase/pectin methylesterase inhibitor superfamily SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G05640.1 Arabidopsis thaliana 0.38 Protein phosphatase 2C family protein SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT3G05660.1 Arabidopsis thaliana 0.36 receptor like protein 33 SRR446032:Vir.1h.B AT3G05725.1 Arabidopsis thaliana 0.79 Protein of unknown function (DUF3511) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G05755.1 Arabidopsis thaliana 0.36 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq SRR671946:GSM1077432: Root_polyA_KCl_Control_rep1; Arabidopsis thaliana; RNA-Seq SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT3G05770.1 Arabidopsis thaliana 0.41 Unknown SRR1652317:atrtf2-2Ho AT3G05810.1 Arabidopsis thaliana 0.35 Unknown SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G05820.1 Arabidopsis thaliana 0.67 invertase H SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G05835.1 Arabidopsis thaliana 0.65 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT3G05858.1 Arabidopsis thaliana 0.57 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G05860.1 Arabidopsis thaliana 0.38 MADS-box transcription factor family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G05910.2 Arabidopsis thaliana 0.31 Pectinacetylesterase family protein SRR1548692:GSM1477537: lsm4 rep 3,1; Arabidopsis thaliana; RNA-Seq SRR1548693:GSM1477538: lsm4 rep 3,2; Arabidopsis thaliana; RNA-Seq AT3G05930.1 Arabidopsis thaliana 0.88 germin-like protein 8 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G05932.1 Arabidopsis thaliana 0.94 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G06019.1 Arabidopsis thaliana 0.69 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT3G06020.1 Arabidopsis thaliana 0.52 Protein of unknown function (DUF3049) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G06105.1 Arabidopsis thaliana 0.46 pre-tRNA SRR499989:gun1/sig6 replicate 2 SRR671949:GSM1077435: Root_polyA_KNO3_Treatment_rep2; Arabidopsis thaliana; RNA-Seq AT3G06130.1 Arabidopsis thaliana 0.33 Heavy metal transport/detoxification superfamily protein DRR008476: AT3G06130.2 Arabidopsis thaliana 0.52 Heavy metal transport/detoxification superfamily protein SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA AT3G06142.1 Arabidopsis thaliana 0.53 Unknown SRR515329:GSM951355: rve8_DEX_1; Arabidopsis thaliana; RNA-Seq ERR351335:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G06150.1 Arabidopsis thaliana 0.53 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G06180.1 Arabidopsis thaliana 0.66 Ribosomal protein L34e superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G06260.1 Arabidopsis thaliana 0.88 galacturonosyltransferase-like 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G06270.1 Arabidopsis thaliana 0.89 Protein phosphatase 2C family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G06300.1 Arabidopsis thaliana 0.31 P4H isoform 2 SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G06310.2 Arabidopsis thaliana 0.45 Cox19-like CHCH family protein SRR609416:RNAseq data from activation tagging mutant of OSD1 in bon1-2 SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq AT3G06330.1 Arabidopsis thaliana 0.43 RING/U-box superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G06330.3 Arabidopsis thaliana 0.55 RING/U-box superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G06380.1 Arabidopsis thaliana 0.47 tubby-like protein 9 SRR1652314:atrtf2-1 AT3G06400.3 Arabidopsis thaliana 0.34 chromatin-remodeling protein 11 SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT3G06420.1 Arabidopsis thaliana 0.32 Ubiquitin-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample SRR364678:nonGFP sample AT3G06460.1 Arabidopsis thaliana 0.32 GNS1/SUR4 membrane protein family SRR1260038:P-_WT_R1 AT3G06545.1 Arabidopsis thaliana 0.54 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G06560.1 Arabidopsis thaliana 0.83 poly(A) polymerase 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G06590.1 Arabidopsis thaliana 0.50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G06590.2 Arabidopsis thaliana 0.34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G06600.2 Arabidopsis thaliana 0.46 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G06760.1 Arabidopsis thaliana 0.34 Drought-responsive family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G06778.1 Arabidopsis thaliana 0.56 Chaperone DnaJ-domain superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G06830.1 Arabidopsis thaliana 0.79 Plant invertase/pectin methylesterase inhibitor superfamily SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G06860.1 Arabidopsis thaliana 0.31 multifunctional protein 2 SRR1652317:atrtf2-2Ho SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G06880.2 Arabidopsis thaliana 0.45 Transducin/WD40 repeat-like superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G06890.1 Arabidopsis thaliana 0.38 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G06900.1 Arabidopsis thaliana 0.39 U4.2; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G06930.2 Arabidopsis thaliana 0.52 protein arginine methyltransferase 4B SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT3G06985.1 Arabidopsis thaliana 0.40 low-molecular-weight cysteine-rich 44 SRR1046870:GSM1287135: Arabidopsis thaliana No-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G06990.1 Arabidopsis thaliana 0.63 Cysteine/Histidine-rich C1 domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G06995.1 Arabidopsis thaliana 0.60 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas AT3G07000.1 Arabidopsis thaliana 0.55 Cysteine/Histidine-rich C1 domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G07005.1 Arabidopsis thaliana 0.63 low-molecular-weight cysteine-rich 43 SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G07040.1 Arabidopsis thaliana 0.51 NB-ARC domain-containing disease resistance protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G07070.1 Arabidopsis thaliana 0.38 Protein kinase superfamily protein SRR364677:GFP sample AT3G07090.1 Arabidopsis thaliana 0.44 PPPDE putative thiol peptidase family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT3G07115.1 Arabidopsis thaliana 0.36 pre-tRNA SRR671946:GSM1077432: Root_polyA_KCl_Control_rep1; Arabidopsis thaliana; RNA-Seq SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT3G07120.1 Arabidopsis thaliana 0.41 RING/U-box superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G07180.3 Arabidopsis thaliana 0.64 GPI transamidase component PIG-S-related SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G07185.1 Arabidopsis thaliana 0.92 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT3G07190.1 Arabidopsis thaliana 0.32 B-cell receptor-associated protein 31-like SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G07195.1 Arabidopsis thaliana 0.32 RPM1-interacting protein 4 (RIN4) family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G07215.1 Arabidopsis thaliana 0.36 other RNA SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT3G07215.3 Arabidopsis thaliana 0.38 other RNA SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G07280.1 Arabidopsis thaliana 0.38 Unknown SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT3G07340.1 Arabidopsis thaliana 0.30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G07370.1 Arabidopsis thaliana 0.63 carboxyl terminus of HSC70-interacting protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G07380.1 Arabidopsis thaliana 0.46 Domain of unknown function (DUF23) SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT3G07490.1 Arabidopsis thaliana 0.44 ARF-GAP domain 11 SRR364677:GFP sample AT3G07510.1 Arabidopsis thaliana 0.39 Unknown SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G07540.1 Arabidopsis thaliana 0.31 Actin-binding FH2 (formin homology 2) family protein SRR1144842:be1-3 7 days on CIM SRR1144845:be1-3 2 days on SIM AT3G07550.1 Arabidopsis thaliana 0.35 RNI-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G07620.1 Arabidopsis thaliana 0.46 Exostosin family protein SRR1144842:be1-3 7 days on CIM AT3G07700.2 Arabidopsis thaliana 0.40 Protein kinase superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G07720.1 Arabidopsis thaliana 0.58 Galactose oxidase/kelch repeat superfamily protein SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT3G07800.1 Arabidopsis thaliana 0.50 Thymidine kinase ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G07820.1 Arabidopsis thaliana 0.93 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G07850.1 Arabidopsis thaliana 0.81 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G07860.1 Arabidopsis thaliana 0.61 Ubiquitin-like superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G07890.2 Arabidopsis thaliana 0.39 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR364677:GFP sample AT3G07900.1 Arabidopsis thaliana 0.37 O-fucosyltransferase family protein SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G07910.1 Arabidopsis thaliana 0.79 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G07930.3 Arabidopsis thaliana 0.42 DNA glycosylase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G07960.1 Arabidopsis thaliana 0.44 Phosphatidylinositol-4-phosphate 5-kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G07970.1 Arabidopsis thaliana 0.77 Pectin lyase-like superfamily protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT3G08030.1 Arabidopsis thaliana 0.41 Protein of unknown function, DUF642 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G08030.2 Arabidopsis thaliana 0.38 Protein of unknown function, DUF642 SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G08040.1 Arabidopsis thaliana 0.39 MATE efflux family protein SRR800753:GSM1111913: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G08570.1 Arabidopsis thaliana 0.32 Phototropic-responsive NPH3 family protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT3G08580.1 Arabidopsis thaliana 0.35 ADP/ATP carrier 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G08590.1 Arabidopsis thaliana 0.47 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G08636.1 Arabidopsis thaliana 0.44 Unknown SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G08640.1 Arabidopsis thaliana 0.35 Protein of unknown function (DUF3411) SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G08690.1 Arabidopsis thaliana 0.31 ubiquitin-conjugating enzyme 11 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G08720.2 Arabidopsis thaliana 0.33 serine/threonine protein kinase 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G08730.1 Arabidopsis thaliana 0.64 protein-serine kinase 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G08770.2 Arabidopsis thaliana 0.33 lipid transfer protein 6 SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT3G08840.3 Arabidopsis thaliana 0.33 D-alanine--D-alanine ligase family SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G08885.1 Arabidopsis thaliana 0.45 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT3G08890.1 Arabidopsis thaliana 0.39 Protein of unknown function, DUF538 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G08890.2 Arabidopsis thaliana 0.42 Protein of unknown function, DUF538 SRR307069:GSM756822: Col x Ler endosperm RNA-seq SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq AT3G08910.1 Arabidopsis thaliana 0.42 DNAJ heat shock family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G08940.1 Arabidopsis thaliana 0.49 light harvesting complex photosystem II SRR609270:GSM1025550: mos2-2 rep2; Arabidopsis thaliana; RNA-Seq AT3G08950.1 Arabidopsis thaliana 0.34 electron transport SCO1/SenC family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G08990.2 Arabidopsis thaliana 0.65 Yippee family putative zinc-binding protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G09032.1 Arabidopsis thaliana 0.32 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G09085.1 Arabidopsis thaliana 0.51 Protein of unknown function (DUF962) SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT3G09100.1 Arabidopsis thaliana 0.40 mRNA capping enzyme family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G09110.1 Arabidopsis thaliana 0.47 Protein of unknown function (DUF674) SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G09140.2 Arabidopsis thaliana 0.32 Protein of unknown function (DUF674) SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G09150.2 Arabidopsis thaliana 0.37 phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G09162.1 Arabidopsis thaliana 0.99 Unknown SRR1652314:atrtf2-1 AT3G09240.1 Arabidopsis thaliana 0.51 Protein kinase protein with tetratricopeptide repeat domain ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G09280.1 Arabidopsis thaliana 0.50 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT3G09285.1 Arabidopsis thaliana 0.92 Unknown SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G09300.1 Arabidopsis thaliana 0.56 OSBP(oxysterol binding protein)-related protein 3B ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G09320.1 Arabidopsis thaliana 0.35 DHHC-type zinc finger family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G09330.1 Arabidopsis thaliana 0.82 Transmembrane amino acid transporter family protein SRR364677:GFP sample AT3G09350.2 Arabidopsis thaliana 0.66 Fes1A SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G09350.3 Arabidopsis thaliana 0.45 Fes1A SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq SRR1004833:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 30 minutes Replicate A SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT3G09400.2 Arabidopsis thaliana 0.53 pol-like 3 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G09430.1 Arabidopsis thaliana 0.74 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT3G09440.1 Arabidopsis thaliana 0.36 Heat shock protein 70 (Hsp 70) family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G09440.2 Arabidopsis thaliana 0.36 Heat shock protein 70 (Hsp 70) family protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT3G09520.1 Arabidopsis thaliana 0.33 exocyst subunit exo70 family protein H4 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G09530.1 Arabidopsis thaliana 0.89 exocyst subunit exo70 family protein H3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G09550.1 Arabidopsis thaliana 0.69 Ankyrin repeat family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G09580.1 Arabidopsis thaliana 0.37 FAD/NAD(P)-binding oxidoreductase family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G09640.2 Arabidopsis thaliana 0.75 ascorbate peroxidase 2 SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A AT3G09760.1 Arabidopsis thaliana 0.71 RING/U-box superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G09810.1 Arabidopsis thaliana 0.45 isocitrate dehydrogenase VI SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G09830.1 Arabidopsis thaliana 0.54 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G09830.2 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G09840.1 Arabidopsis thaliana 0.61 cell division cycle 48 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G09863.1 Arabidopsis thaliana 0.42 Unknown SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT3G09870.1 Arabidopsis thaliana 0.41 SAUR-like auxin-responsive protein family SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G09925.1 Arabidopsis thaliana 0.58 Pollen Ole e 1 allergen and extensin family protein SRR364677:GFP sample AT3G09940.2 Arabidopsis thaliana 0.60 monodehydroascorbate reductase SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G09975.1 Arabidopsis thaliana 0.33 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas SRR1046932:GSM1287190: Sf-2 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR1046933:GSM1287191: Tsu-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G09990.1 Arabidopsis thaliana 0.38 Nucleoside transporter family protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT3G10030.2 Arabidopsis thaliana 0.42 aspartate/glutamate/uridylate kinase family protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT3G10035.1 Arabidopsis thaliana 0.37 pre-tRNA SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq AT3G10040.1 Arabidopsis thaliana 0.31 sequence-specific DNA binding transcription factors SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G10080.1 Arabidopsis thaliana 0.39 RmlC-like cupins superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT3G10140.1 Arabidopsis thaliana 0.34 RECA homolog 3 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G10185.1 Arabidopsis thaliana 0.41 Gibberellin-regulated family protein SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G10210.1 Arabidopsis thaliana 0.40 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G10250.1 Arabidopsis thaliana 0.34 Plant protein 1589 of unknown function SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G10280.1 Arabidopsis thaliana 0.39 3-ketoacyl-CoA synthase 14 SRR1058110:GSM1297912: at-seed-ler_wt_x_col_wt 1; Arabidopsis thaliana; RNA-Seq SRR1058111:GSM1297913: at-seed-ler_wt_x_col_wt 2; Arabidopsis thaliana; RNA-Seq SRR1058112:GSM1297914: at-seed-ler_wt_x_col_wt 3; Arabidopsis thaliana; RNA-Seq SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq SRR1058118:GSM1297920: at-seed-ler_wt_x_col_met 3; Arabidopsis thaliana; RNA-Seq AT3G10290.1 Arabidopsis thaliana 0.47 Nucleotide-sugar transporter family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G10300.2 Arabidopsis thaliana 0.34 Calcium-binding EF-hand family protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G10330.1 Arabidopsis thaliana 0.45 Cyclin-like family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G10340.1 Arabidopsis thaliana 0.37 phenylalanine ammonia-lyase 4 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G10410.1 Arabidopsis thaliana 0.37 SERINE CARBOXYPEPTIDASE-LIKE 49 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G10415.1 Arabidopsis thaliana 0.65 pre-tRNA SRR499983:col-0 replicate 1 AT3G10439.1 Arabidopsis thaliana 0.62 Unknown SRR609269:GSM1025549: mos2-2 rep1; Arabidopsis thaliana; RNA-Seq AT3G10450.1 Arabidopsis thaliana 0.45 serine carboxypeptidase-like 7 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G10460.1 Arabidopsis thaliana 0.52 Plant self-incompatibility protein S1 family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G10470.1 Arabidopsis thaliana 0.34 C2H2-type zinc finger family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G10510.1 Arabidopsis thaliana 0.59 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G10526.1 Arabidopsis thaliana 0.65 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G10540.1 Arabidopsis thaliana 0.31 3-phosphoinositide-dependent protein kinase ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G10572.1 Arabidopsis thaliana 0.32 3-phosphoinositide-dependent protein kinase-1, putative SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G10595.1 Arabidopsis thaliana 0.65 Duplicated homeodomain-like superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G10680.1 Arabidopsis thaliana 0.37 HSP20-like chaperones superfamily protein SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G10720.1 Arabidopsis thaliana 0.51 Plant invertase/pectin methylesterase inhibitor superfamily ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G10745.1 Arabidopsis thaliana 0.74 MIR158A; miRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT3G10815.1 Arabidopsis thaliana 0.36 RING/U-box superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G10840.1 Arabidopsis thaliana 0.35 alpha/beta-Hydrolases superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G10870.1 Arabidopsis thaliana 0.70 methyl esterase 17 SRR1144842:be1-3 7 days on CIM AT3G10915.3 Arabidopsis thaliana 0.46 Reticulon family protein SRR1652315:prp8-7 AT3G10915.5 Arabidopsis thaliana 0.61 Reticulon family protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G10930.1 Arabidopsis thaliana 0.37 Unknown SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G10950.1 Arabidopsis thaliana 0.41 Zinc-binding ribosomal protein family protein SRR1046917:GSM1287175: Kn-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G10960.1 Arabidopsis thaliana 0.50 AZA-guanine resistant1 SRR364677:GFP sample AT3G10970.3 Arabidopsis thaliana 0.54 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G10986.1 Arabidopsis thaliana 0.59 Protein of unknown function (DUF567) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G11000.1 Arabidopsis thaliana 0.31 DCD (Development and Cell Death) domain protein SRR1207194:GSM1359146: WT 1; Arabidopsis thaliana; RNA-Seq SRR1207195:GSM1359147: WT 2; Arabidopsis thaliana; RNA-Seq SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq SRR1207198:GSM1359150: nga 3; Arabidopsis thaliana; RNA-Seq SRR1207199:GSM1359151: 35S:NGA 1; Arabidopsis thaliana; RNA-Seq SRR1207200:GSM1359152: 35S:NGA 2; Arabidopsis thaliana; RNA-Seq SRR1207201:GSM1359153: 35S:NGA 3; Arabidopsis thaliana; RNA-Seq AT3G11020.1 Arabidopsis thaliana 0.41 DRE/CRT-binding protein 2B ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G11160.1 Arabidopsis thaliana 0.39 Unknown SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT3G11260.1 Arabidopsis thaliana 0.36 WUSCHEL related homeobox 5 SRR1144842:be1-3 7 days on CIM AT3G11370.1 Arabidopsis thaliana 0.37 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G11385.1 Arabidopsis thaliana 0.69 Cysteine/Histidine-rich C1 domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G11395.1 Arabidopsis thaliana 0.49 pre-tRNA SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq AT3G11400.2 Arabidopsis thaliana 0.42 eukaryotic translation initiation factor 3G1 SRR345564:GSM798298: mRNASeq_skip_rep2 SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT3G11415.1 Arabidopsis thaliana 0.56 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G11435.1 Arabidopsis thaliana 0.37 MIR172C; miRNA SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq ERR351332:arabidopsis_thaliana_floral_meristem_atlas SRR1037376:RNA-Seq-RNA-Seq_replicate_2 AT3G11520.1 Arabidopsis thaliana 0.30 CYCLIN B1;3 SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G11620.4 Arabidopsis thaliana 0.34 alpha/beta-Hydrolases superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G11673.1 Arabidopsis thaliana 0.57 Unknown SRR1652316:atrtf2-2He AT3G11690.1 Arabidopsis thaliana 0.68 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G11720.2 Arabidopsis thaliana 0.50 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR1144843:WS 7 days on CIM AT3G11730.1 Arabidopsis thaliana 0.46 Ras-related small GTP-binding family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G11750.1 Arabidopsis thaliana 0.65 Dihydroneopterin aldolase SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G11773.1 Arabidopsis thaliana 0.47 Thioredoxin superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G11780.1 Arabidopsis thaliana 0.43 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G11780.2 Arabidopsis thaliana 0.40 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein SRR345562:GSM798296: mRNASeq_WT_rep2 AT3G11850.1 Arabidopsis thaliana 0.49 Protein of unknown function, DUF593 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G11850.2 Arabidopsis thaliana 0.66 Protein of unknown function, DUF593 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G11900.1 Arabidopsis thaliana 0.49 aromatic and neutral transporter 1 SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G11920.1 Arabidopsis thaliana 0.32 glutaredoxin-related SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G11940.1 Arabidopsis thaliana 0.35 ribosomal protein 5A SRR446030:Avr.1h.B AT3G12050.1 Arabidopsis thaliana 0.31 Aha1 domain-containing protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT3G12070.2 Arabidopsis thaliana 0.31 RAB geranylgeranyl transferase beta subunit 2 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G12120.1 Arabidopsis thaliana 0.30 fatty acid desaturase 2 SRR1105606:GSM1303979: PDAT_11-12_C; Arabidopsis thaliana; RNA-Seq AT3G12130.1 Arabidopsis thaliana 0.31 KH domain-containing protein / zinc finger (CCCH type) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G12150.1 Arabidopsis thaliana 0.32 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G12180.1 Arabidopsis thaliana 0.75 Cornichon family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G12190.1 Arabidopsis thaliana 0.51 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G12230.1 Arabidopsis thaliana 0.35 serine carboxypeptidase-like 14 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G12240.1 Arabidopsis thaliana 0.35 serine carboxypeptidase-like 15 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G12280.2 Arabidopsis thaliana 0.32 retinoblastoma-related 1 SRR307067:GSM756821: Col x Ler embryo RNA-seq SRR307072:GSM756823: Ler x Col embryo RNA-seq AT3G12340.1 Arabidopsis thaliana 0.30 FKBP-like peptidyl-prolyl cis-trans isomerase family protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT3G12380.2 Arabidopsis thaliana 0.47 actin-related protein 5 SRR1144843:WS 7 days on CIM AT3G12410.1 Arabidopsis thaliana 0.31 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT3G12470.1 Arabidopsis thaliana 0.38 Polynucleotidyl transferase, ribonuclease H-like superfamily protein ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT3G12510.1 Arabidopsis thaliana 0.45 MADS-box family protein SRR364677:GFP sample SRR364678:nonGFP sample AT3G12520.1 Arabidopsis thaliana 0.58 sulfate transporter 4;2 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G12540.1 Arabidopsis thaliana 0.87 Protein of unknown function, DUF547 SRR364677:GFP sample AT3G12585.1 Arabidopsis thaliana 0.34 pre-tRNA SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR499988:gun1/sig6 replicate 1 SRR499989:gun1/sig6 replicate 2 SRR1576251:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT3G12620.1 Arabidopsis thaliana 0.77 Protein phosphatase 2C family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G12630.1 Arabidopsis thaliana 0.32 A20/AN1-like zinc finger family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G12650.1 Arabidopsis thaliana 0.33 Unknown SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G12685.1 Arabidopsis thaliana 0.51 Acid phosphatase/vanadium-dependent haloperoxidase-related protein SRR1257399:GSM1371361: infected T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G12690.2 Arabidopsis thaliana 0.72 AGC kinase 1.5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G12690.3 Arabidopsis thaliana 0.49 AGC kinase 1.5 SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G12710.1 Arabidopsis thaliana 0.71 DNA glycosylase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G12775.1 Arabidopsis thaliana 0.45 ubiquitin-conjugating enzyme family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G12830.1 Arabidopsis thaliana 0.33 SAUR-like auxin-responsive protein family SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G12835.1 Arabidopsis thaliana 0.79 Unknown SRR1257391:GSM1371353: infected Col0 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G12890.1 Arabidopsis thaliana 0.37 activator of spomin::LUC2 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT3G12900.1 Arabidopsis thaliana 0.75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT3G12910.1 Arabidopsis thaliana 0.31 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT3G12960.1 Arabidopsis thaliana 0.57 Unknown SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq AT3G13062.3 Arabidopsis thaliana 0.38 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT3G13065.1 Arabidopsis thaliana 0.75 STRUBBELIG-receptor family 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G13080.1 Arabidopsis thaliana 0.37 multidrug resistance-associated protein 3 SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G13080.4 Arabidopsis thaliana 0.39 multidrug resistance-associated protein 3 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT3G13120.2 Arabidopsis thaliana 0.42 Ribosomal protein S10p/S20e family protein SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT3G13130.1 Arabidopsis thaliana 0.49 Unknown SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT3G13190.1 Arabidopsis thaliana 0.32 Plant protein of unknown function (DUF827) ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G13205.1 Arabidopsis thaliana 0.43 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G13210.1 Arabidopsis thaliana 0.42 crooked neck protein, putative / cell cycle protein, putative SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G13227.1 Arabidopsis thaliana 0.88 serine-rich protein-related SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G13229.1 Arabidopsis thaliana 0.58 Plant protein of unknown function (DUF868) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G13320.1 Arabidopsis thaliana 0.45 cation exchanger 2 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G13330.1 Arabidopsis thaliana 0.34 proteasome activating protein 200 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G13370.1 Arabidopsis thaliana 0.43 Unknown SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G13390.1 Arabidopsis thaliana 0.89 SKU5 similar 11 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G13400.1 Arabidopsis thaliana 0.92 SKU5 similar 13 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G13405.1 Arabidopsis thaliana 0.41 MIR169A; miRNA SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G13420.1 Arabidopsis thaliana 0.55 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G13432.1 Arabidopsis thaliana 0.36 Unknown SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G13433.1 Arabidopsis thaliana 0.45 Unknown SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT3G13445.2 Arabidopsis thaliana 0.36 TATA binding protein 1 SRR584119:GSM1017160: NMD_MOCK_R1; Arabidopsis thaliana; RNA-Seq SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G13450.1 Arabidopsis thaliana 0.33 Transketolase family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT3G13480.1 Arabidopsis thaliana 0.46 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT3G13525.1 Arabidopsis thaliana 0.37 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G13550.1 Arabidopsis thaliana 0.36 Ubiquitin-conjugating enzyme family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G13560.1 Arabidopsis thaliana 0.30 O-Glycosyl hydrolases family 17 protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G13594.1 Arabidopsis thaliana 0.36 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT3G13600.1 Arabidopsis thaliana 0.41 calmodulin-binding family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G13610.1 Arabidopsis thaliana 0.54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR331224:arabidopsis root in control condition SRR1524941:iron-deficiency sample #1 SRR1524945:iron-deficiency sample #2 SRR1524946:iron-deficiency sample #3 SRR331228:RNAseq for arabidopsis in iron deficiency condition AT3G13620.1 Arabidopsis thaliana 0.41 Amino acid permease family protein SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT3G13630.1 Arabidopsis thaliana 0.53 Unknown SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT3G13660.1 Arabidopsis thaliana 0.78 Disease resistance-responsive (dirigent-like protein) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G13672.1 Arabidopsis thaliana 0.50 TRAF-like superfamily protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT3G13682.1 Arabidopsis thaliana 0.58 LSD1-like2 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G13686.1 Arabidopsis thaliana 0.49 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT3G13700.1 Arabidopsis thaliana 0.38 RNA-binding (RRM/RBD/RNP motifs) family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G13740.2 Arabidopsis thaliana 0.62 Ribonuclease III family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G13760.1 Arabidopsis thaliana 0.42 Cysteine/Histidine-rich C1 domain family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G13782.1 Arabidopsis thaliana 0.74 nucleosome assembly protein1;4 SRR364677:GFP sample AT3G13784.1 Arabidopsis thaliana 0.31 cell wall invertase 5 SRR1046933:GSM1287191: Tsu-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046934:GSM1287192: Tsu-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR1046937:GSM1287195: Ws-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046938:GSM1287196: Ws-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT3G13790.2 Arabidopsis thaliana 0.56 Glycosyl hydrolases family 32 protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G13810.2 Arabidopsis thaliana 0.56 indeterminate(ID)-domain 11 SRR609415:RNAseq data from activation tagging mutant of OSD1 in bon1-2 AT3G13830.1 Arabidopsis thaliana 0.68 F-box and associated interaction domains-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G13840.1 Arabidopsis thaliana 0.32 GRAS family transcription factor SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G13850.1 Arabidopsis thaliana 0.48 LOB domain-containing protein 22 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G13855.1 Arabidopsis thaliana 0.32 U6-26; snRNA SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G13857.1 Arabidopsis thaliana 0.71 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G13965.1 Arabidopsis thaliana 0.63 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G13990.1 Arabidopsis thaliana 0.35 Kinase-related protein of unknown function (DUF1296) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G14010.4 Arabidopsis thaliana 0.58 CTC-interacting domain 4 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G14040.1 Arabidopsis thaliana 0.78 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G14060.1 Arabidopsis thaliana 0.31 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G14090.1 Arabidopsis thaliana 0.34 exocyst subunit exo70 family protein D3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G14110.3 Arabidopsis thaliana 0.37 Tetratricopeptide repeat (TPR)-like superfamily protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518044:GSM954621: H2AZ_WT_3_RNA; Arabidopsis thaliana; RNA-Seq AT3G14130.1 Arabidopsis thaliana 0.47 Aldolase-type TIM barrel family protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G14172.1 Arabidopsis thaliana 0.43 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT3G14185.1 Arabidopsis thaliana 0.44 other RNA SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G14415.2 Arabidopsis thaliana 0.58 Aldolase-type TIM barrel family protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G14431.1 Arabidopsis thaliana 0.74 Unknown SRR960214:GSM1219971: WT_mRNA-Seq (rrp6l1-2 control); Arabidopsis thaliana; RNA-Seq AT3G14450.1 Arabidopsis thaliana 0.44 CTC-interacting domain 9 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G14475.1 Arabidopsis thaliana 0.57 snoRNA SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G14480.1 Arabidopsis thaliana 0.46 glycine/proline-rich protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G14515.1 Arabidopsis thaliana 0.59 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G14520.1 Arabidopsis thaliana 0.54 Terpenoid cyclases/Protein prenyltransferases superfamily protein SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq AT3G14550.1 Arabidopsis thaliana 0.38 geranylgeranyl pyrophosphate synthase 3 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G14560.1 Arabidopsis thaliana 0.39 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G14580.1 Arabidopsis thaliana 0.30 Pentatricopeptide repeat (PPR) superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G14590.1 Arabidopsis thaliana 0.31 Calcium-dependent lipid-binding (CaLB domain) family protein SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT3G14595.1 Arabidopsis thaliana 0.86 Ribosomal protein L18ae family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G14690.1 Arabidopsis thaliana 0.63 cytochrome P450, family 72, subfamily A, polypeptide 15 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G14735.1 Arabidopsis thaliana 0.75 U6-1; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G14740.1 Arabidopsis thaliana 0.85 RING/FYVE/PHD zinc finger superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G14740.2 Arabidopsis thaliana 0.73 RING/FYVE/PHD zinc finger superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G14750.1 Arabidopsis thaliana 0.52 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G14770.1 Arabidopsis thaliana 0.33 Nodulin MtN3 family protein SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT3G14870.2 Arabidopsis thaliana 0.36 Plant protein of unknown function (DUF641) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G14880.2 Arabidopsis thaliana 0.59 Unknown SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G14900.1 Arabidopsis thaliana 0.42 Unknown SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT3G14981.1 Arabidopsis thaliana 0.35 Unknown SRR1652314:atrtf2-1 AT3G14990.3 Arabidopsis thaliana 0.65 Class I glutamine amidotransferase-like superfamily protein SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq AT3G15020.2 Arabidopsis thaliana 0.61 Lactate/malate dehydrogenase family protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT3G15030.2 Arabidopsis thaliana 0.71 TCP family transcription factor 4 SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G15050.1 Arabidopsis thaliana 0.47 IQ-domain 10 SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G15111.1 Arabidopsis thaliana 0.34 Unknown SRR1001908:GSM1239086: ibl1 mutant #2; Arabidopsis thaliana; RNA-Seq AT3G15115.1 Arabidopsis thaliana 0.49 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G15150.1 Arabidopsis thaliana 0.42 RING/U-box superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G15250.1 Arabidopsis thaliana 0.41 Unknown SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G15280.1 Arabidopsis thaliana 0.39 Unknown SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G15330.1 Arabidopsis thaliana 0.83 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G15340.1 Arabidopsis thaliana 0.48 proton pump interactor 2 SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G15340.2 Arabidopsis thaliana 0.32 proton pump interactor 2 SRR068971:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068972:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068973:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068974:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm SRR068987:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068988:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068989:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068990:GSM607735: Ler-WTxCol-WT_full-Endosperm AT3G15351.2 Arabidopsis thaliana 0.46 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G15355.1 Arabidopsis thaliana 0.54 ubiquitin-conjugating enzyme 25 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G15359.1 Arabidopsis thaliana 0.49 Unknown SRR976159:ARX20 at 50mm 1hr AT3G15360.1 Arabidopsis thaliana 0.33 thioredoxin M-type 4 ERR229831:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229833:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G15400.2 Arabidopsis thaliana 0.81 anther 20 DRR008476: AT3G15450.2 Arabidopsis thaliana 0.37 Aluminium induced protein with YGL and LRDR motifs SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G15460.1 Arabidopsis thaliana 0.36 Ribosomal RNA processing Brix domain protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G15500.1 Arabidopsis thaliana 0.32 NAC domain containing protein 3 SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT3G15530.2 Arabidopsis thaliana 0.30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR627629:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627634:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627639:GSM1047658: pif1-RNA; Arabidopsis thaliana; RNA-Seq SRR627640:GSM1047658: pif1-RNA; Arabidopsis thaliana; RNA-Seq SRR627662:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq AT3G15534.1 Arabidopsis thaliana 0.63 Unknown SRR1257390:GSM1371352: mock Col0 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G15548.1 Arabidopsis thaliana 0.69 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT3G15650.1 Arabidopsis thaliana 0.31 alpha/beta-Hydrolases superfamily protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT3G15670.1 Arabidopsis thaliana 0.40 Late embryogenesis abundant protein (LEA) family protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G15690.1 Arabidopsis thaliana 0.35 Single hybrid motif superfamily protein SRR949988:early shade responses in Arabidopsis adult plants (Col, 4 hr sun) AT3G15700.1 Arabidopsis thaliana 0.63 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR364677:GFP sample AT3G15720.2 Arabidopsis thaliana 0.66 Pectin lyase-like superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT3G15740.1 Arabidopsis thaliana 0.55 RING/U-box superfamily protein SRR364677:GFP sample AT3G15800.1 Arabidopsis thaliana 0.52 Glycosyl hydrolase superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT3G15830.1 Arabidopsis thaliana 0.33 phosphatidic acid phosphatase-related / PAP2-related DRR008476: DRR008478:Arabidopsis ibm2-2 mRNA_seq SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G15840.2 Arabidopsis thaliana 0.35 post-illumination chlorophyll fluorescence increase SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT3G15909.1 Arabidopsis thaliana 0.53 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G15940.1 Arabidopsis thaliana 0.33 UDP-Glycosyltransferase superfamily protein SRR975489:S26 at 150mm 1hr AT3G15950.1 Arabidopsis thaliana 0.34 DNA topoisomerase-related SRR1046863:GSM1287128: Arabidopsis thaliana Ler-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G15960.1 Arabidopsis thaliana 0.75 mismatched DNA binding;ATP binding SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G15980.5 Arabidopsis thaliana 0.66 Coatomer, beta' subunit SRR627661:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq SRR627662:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq AT3G16010.1 Arabidopsis thaliana 0.35 Pentatricopeptide repeat (PPR-like) superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G16030.1 Arabidopsis thaliana 0.58 lectin protein kinase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G16040.1 Arabidopsis thaliana 0.80 Translation machinery associated TMA7 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G16050.1 Arabidopsis thaliana 0.40 pyridoxine biosynthesis 1.2 SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT3G16100.1 Arabidopsis thaliana 0.37 RAB GTPase homolog G3C SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G16250.1 Arabidopsis thaliana 0.38 NDH-dependent cyclic electron flow 1 SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq AT3G16290.1 Arabidopsis thaliana 0.38 AAA-type ATPase family protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT3G16340.2 Arabidopsis thaliana 0.31 pleiotropic drug resistance 1 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G16360.1 Arabidopsis thaliana 0.61 HPT phosphotransmitter 4 SRR988549:GSM1232785: WT_mRNA; Arabidopsis thaliana; RNA-Seq AT3G16360.2 Arabidopsis thaliana 0.31 HPT phosphotransmitter 4 SRR988549:GSM1232785: WT_mRNA; Arabidopsis thaliana; RNA-Seq SRR826412:Sample Control BR5 AT3G16380.1 Arabidopsis thaliana 0.50 poly(A) binding protein 6 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G16390.1 Arabidopsis thaliana 0.72 nitrile specifier protein 3 SRR364677:GFP sample AT3G16410.1 Arabidopsis thaliana 0.53 nitrile specifier protein 4 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G16420.1 Arabidopsis thaliana 0.37 PYK10-binding protein 1 SRR974750:GSM1226366: mRNASS-Dark_2; Arabidopsis thaliana; RNA-Seq SRR974751:GSM1226367: mRNASS-L4h_2; Arabidopsis thaliana; RNA-Seq AT3G16420.3 Arabidopsis thaliana 0.39 PYK10-binding protein 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G16430.2 Arabidopsis thaliana 0.32 jacalin-related lectin 31 SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G16440.1 Arabidopsis thaliana 0.39 myrosinase-binding protein-like protein-300B SRR364678:nonGFP sample AT3G16470.2 Arabidopsis thaliana 0.55 Mannose-binding lectin superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G16480.1 Arabidopsis thaliana 0.48 mitochondrial processing peptidase alpha subunit SRR1508466:GSM1429688: cle40-2 replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508467:GSM1429691: cle40-2 replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508468:GSM1429693: cle40-2 replicate 3; Arabidopsis thaliana; RNA-Seq AT3G16552.1 Arabidopsis thaliana 0.44 pre-tRNA SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G16565.2 Arabidopsis thaliana 0.32 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G16670.1 Arabidopsis thaliana 0.34 Pollen Ole e 1 allergen and extensin family protein SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq AT3G16710.1 Arabidopsis thaliana 0.33 Pentatricopeptide repeat (PPR) superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G16712.1 Arabidopsis thaliana 0.36 Unknown SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G16800.1 Arabidopsis thaliana 0.31 Protein phosphatase 2C family protein SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT3G16851.1 Arabidopsis thaliana 0.63 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT3G16857.2 Arabidopsis thaliana 0.35 response regulator 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G16860.1 Arabidopsis thaliana 0.42 COBRA-like protein 8 precursor SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G16920.1 Arabidopsis thaliana 0.43 chitinase-like protein 2 SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq SRR953401:GSM1210578: silique; Arabidopsis thaliana; RNA-Seq SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G16970.1 Arabidopsis thaliana 0.51 Plant self-incompatibility protein S1 family SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT3G17060.1 Arabidopsis thaliana 0.92 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G17140.1 Arabidopsis thaliana 0.37 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq AT3G17170.1 Arabidopsis thaliana 0.42 Translation elongation factor EF1B/ribosomal protein S6 family protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT3G17180.1 Arabidopsis thaliana 0.43 serine carboxypeptidase-like 33 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G17185.2 Arabidopsis thaliana 0.30 TAS3/TASIR-ARF (TRANS-ACTING SIRNA3); other RNA SRR1257398:GSM1371360: mock T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G17203.1 Arabidopsis thaliana 0.52 Unknown SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G17261.1 Arabidopsis thaliana 1.00 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G17350.1 Arabidopsis thaliana 0.40 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G17365.1 Arabidopsis thaliana 0.39 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G17400.1 Arabidopsis thaliana 0.80 F-box family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G17480.1 Arabidopsis thaliana 0.43 F-box and associated interaction domains-containing protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G17510.2 Arabidopsis thaliana 0.41 CBL-interacting protein kinase 1 SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. SRR975543:S26 at 0mm 24hr SRR978413:18O at 0mm 24hr AT3G17580.1 Arabidopsis thaliana 0.38 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G17590.2 Arabidopsis thaliana 0.42 transcription regulatory protein SNF5, putative (BSH) SRR388667:GSM847336: WT-Seedling-RNAseq-3; Arabidopsis thaliana; RNA-Seq AT3G17611.1 Arabidopsis thaliana 0.68 RHOMBOID-like protein 14 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G17640.1 Arabidopsis thaliana 0.31 Leucine-rich repeat (LRR) family protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G17660.1 Arabidopsis thaliana 0.73 ARF-GAP domain 15 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G17710.1 Arabidopsis thaliana 0.37 F-box and associated interaction domains-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G17790.1 Arabidopsis thaliana 0.33 purple acid phosphatase 17 SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT3G17810.1 Arabidopsis thaliana 0.35 pyrimidine 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G17845.1 Arabidopsis thaliana 0.55 Unknown SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G17860.1 Arabidopsis thaliana 0.45 jasmonate-zim-domain protein 3 SRR364677:GFP sample SRR364678:nonGFP sample AT3G17890.1 Arabidopsis thaliana 0.58 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G17920.1 Arabidopsis thaliana 0.37 Outer arm dynein light chain 1 protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G17920.2 Arabidopsis thaliana 0.33 Outer arm dynein light chain 1 protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G17980.1 Arabidopsis thaliana 0.85 Calcium-dependent lipid-binding (CaLB domain) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G18050.1 Arabidopsis thaliana 0.41 Unknown SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G18070.1 Arabidopsis thaliana 0.40 beta glucosidase 43 SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G18070.2 Arabidopsis thaliana 0.33 beta glucosidase 43 SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G18140.1 Arabidopsis thaliana 0.34 Transducin/WD40 repeat-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G18140.2 Arabidopsis thaliana 0.43 Transducin/WD40 repeat-like superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G18200.1 Arabidopsis thaliana 0.76 nodulin MtN21 /EamA-like transporter family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G18200.2 Arabidopsis thaliana 0.73 nodulin MtN21 /EamA-like transporter family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G18217.1 Arabidopsis thaliana 0.54 MIR157C; miRNA SRR1257396:GSM1371358: infected NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq SRR1257408:GSM1371370: infected T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G18220.1 Arabidopsis thaliana 0.91 Phosphatidic acid phosphatase (PAP2) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G18280.1 Arabidopsis thaliana 0.43 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1548688:GSM1477533: lsm4 rep 1,1; Arabidopsis thaliana; RNA-Seq SRR1548689:GSM1477534: lsm4 rep 1,2; Arabidopsis thaliana; RNA-Seq SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq SRR1548692:GSM1477537: lsm4 rep 3,1; Arabidopsis thaliana; RNA-Seq SRR1548693:GSM1477538: lsm4 rep 3,2; Arabidopsis thaliana; RNA-Seq AT3G18291.1 Arabidopsis thaliana 0.30 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G18330.1 Arabidopsis thaliana 0.71 F-box family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G18510.1 Arabidopsis thaliana 0.34 Unknown SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G18518.1 Arabidopsis thaliana 0.31 ROTUNDIFOLIA like 20 SRR388667:GSM847336: WT-Seedling-RNAseq-3; Arabidopsis thaliana; RNA-Seq SRR419185:GSM881682: idn2idnl1idnl2_mRNA_leaves; Arabidopsis thaliana; RNA-Seq AT3G18535.1 Arabidopsis thaliana 0.53 tubulin-tyrosine ligases SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G18550.1 Arabidopsis thaliana 0.67 TCP family transcription factor SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G18550.2 Arabidopsis thaliana 0.49 TCP family transcription factor SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G18690.1 Arabidopsis thaliana 0.36 MAP kinase substrate 1 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G18710.1 Arabidopsis thaliana 0.54 plant U-box 29 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G18715.1 Arabidopsis thaliana 0.35 inflorescence deficient in abscission (IDA)-like 4 SRR1144842:be1-3 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G18779.1 Arabidopsis thaliana 0.92 Unknown SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A AT3G18810.1 Arabidopsis thaliana 0.93 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G18820.1 Arabidopsis thaliana 0.33 RAB GTPase homolog G3F ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G18845.1 Arabidopsis thaliana 0.47 Unknown SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G18860.1 Arabidopsis thaliana 0.36 transducin family protein / WD-40 repeat family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G18870.1 Arabidopsis thaliana 0.33 Mitochondrial transcription termination factor family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G18895.1 Arabidopsis thaliana 0.79 MIR418; miRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq AT3G18930.2 Arabidopsis thaliana 0.35 RING/U-box superfamily protein SRR1652315:prp8-7 AT3G18980.1 Arabidopsis thaliana 0.57 EIN2 targeting protein1 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G19020.1 Arabidopsis thaliana 0.93 Leucine-rich repeat (LRR) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G19050.1 Arabidopsis thaliana 0.32 phragmoplast orienting kinesin 2 SRR1144843:WS 7 days on CIM AT3G19240.1 Arabidopsis thaliana 0.33 Vacuolar import/degradation, Vid27-related protein SRR068987:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068988:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068989:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068990:GSM607735: Ler-WTxCol-WT_full-Endosperm AT3G19274.1 Arabidopsis thaliana 0.58 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G19280.1 Arabidopsis thaliana 0.42 fucosyltransferase 11 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G19290.3 Arabidopsis thaliana 0.34 ABRE binding factor 4 SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G19310.1 Arabidopsis thaliana 0.89 PLC-like phosphodiesterases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G19320.1 Arabidopsis thaliana 0.85 Leucine-rich repeat (LRR) family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G19360.1 Arabidopsis thaliana 0.35 Zinc finger (CCCH-type) family protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT3G19390.1 Arabidopsis thaliana 0.54 Granulin repeat cysteine protease family protein SRR364677:GFP sample AT3G19460.1 Arabidopsis thaliana 0.34 Reticulon family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G19470.1 Arabidopsis thaliana 0.31 F-box and associated interaction domains-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G19550.1 Arabidopsis thaliana 0.55 Unknown SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT3G19580.2 Arabidopsis thaliana 0.58 zinc-finger protein 2 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G19610.1 Arabidopsis thaliana 0.81 Plant protein of unknown function (DUF936) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G19660.1 Arabidopsis thaliana 0.41 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G19680.1 Arabidopsis thaliana 0.32 Protein of unknown function (DUF1005) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G19830.1 Arabidopsis thaliana 0.32 Calcium-dependent lipid-binding (CaLB domain) family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G19840.1 Arabidopsis thaliana 0.34 pre-mRNA-processing protein 40C SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G19900.1 Arabidopsis thaliana 0.33 Unknown SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT3G19950.1 Arabidopsis thaliana 0.34 RING/U-box superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G19970.1 Arabidopsis thaliana 0.59 alpha/beta-Hydrolases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G20020.2 Arabidopsis thaliana 0.42 protein arginine methyltransferase 6 SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G20030.1 Arabidopsis thaliana 0.39 F-box and associated interaction domains-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G20070.1 Arabidopsis thaliana 0.34 titan9 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G20075.1 Arabidopsis thaliana 0.44 Unknown SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G20083.1 Arabidopsis thaliana 0.31 Unknown ERR588048:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G20120.1 Arabidopsis thaliana 0.32 cytochrome P450, family 705, subfamily A, polypeptide 21 SRR584117:GSM1017158: NMD_UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G20130.2 Arabidopsis thaliana 0.61 cytochrome P450, family 705, subfamily A, polypeptide 22 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G20190.1 Arabidopsis thaliana 0.88 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G20200.1 Arabidopsis thaliana 0.67 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G20220.1 Arabidopsis thaliana 0.78 SAUR-like auxin-responsive protein family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G20280.1 Arabidopsis thaliana 0.36 RING/FYVE/PHD zinc finger superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G20300.1 Arabidopsis thaliana 0.79 Protein of unknown function (DUF3537) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G20310.1 Arabidopsis thaliana 0.42 ethylene response factor 7 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G20320.2 Arabidopsis thaliana 0.33 trigalactosyldiacylglycerol2 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G20360.1 Arabidopsis thaliana 0.41 TRAF-like family protein SRR364678:nonGFP sample AT3G20362.1 Arabidopsis thaliana 0.38 Unknown SRR527175:nrpe1 replicate2 SRR527167:Col-0 on geldanamycin replicate2 AT3G20365.1 Arabidopsis thaliana 0.42 pre-tRNA SRR499986:gun1 replicate 1 AT3G20370.1 Arabidopsis thaliana 0.50 TRAF-like family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G20380.1 Arabidopsis thaliana 0.39 TRAF-like family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G20395.1 Arabidopsis thaliana 0.31 RING/U-box superfamily protein SRR1019440:GSM1252266: iaa3 RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019441:GSM1252267: iaa3 RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR1019442:GSM1252268: iaa3 + BR RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019443:GSM1252269: iaa3 + BR RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT3G20440.1 Arabidopsis thaliana 0.31 Alpha amylase family protein SRR949989:early shade responses in Arabidopsis adult plants (Col, 4 hr sun) SRR949991:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) SRR949993:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G20460.1 Arabidopsis thaliana 0.69 Major facilitator superfamily protein SRR364677:GFP sample AT3G20475.1 Arabidopsis thaliana 0.50 MUTS-homologue 5 SRR548278:GSM994839: 35S:SsCBF1-11; Arabidopsis thaliana; RNA-Seq AT3G20530.1 Arabidopsis thaliana 0.53 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G20560.1 Arabidopsis thaliana 0.51 PDI-like 5-3 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G20580.1 Arabidopsis thaliana 0.91 COBRA-like protein 10 precursor SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G20590.1 Arabidopsis thaliana 0.47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family SRR1144843:WS 7 days on CIM AT3G20760.1 Arabidopsis thaliana 0.44 Nse4, component of Smc5/6 DNA repair complex SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT3G20830.1 Arabidopsis thaliana 0.37 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT3G20840.1 Arabidopsis thaliana 0.35 Integrase-type DNA-binding superfamily protein SRR1144843:WS 7 days on CIM AT3G20850.1 Arabidopsis thaliana 0.50 proline-rich family protein SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT3G20865.1 Arabidopsis thaliana 0.90 arabinogalactan protein 40 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G20880.1 Arabidopsis thaliana 0.53 WIP domain protein 4 SRR1144843:WS 7 days on CIM AT3G20885.1 Arabidopsis thaliana 0.38 pre-tRNA SRR1004829:tanorexia-1 Transcriptome Profiling E2 High-Light 30 minutes Replicate B SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT3G20920.2 Arabidopsis thaliana 0.41 translocation protein-related SRR520242:GSM958262: pif3-RNA-3; Arabidopsis thaliana; RNA-Seq AT3G20970.1 Arabidopsis thaliana 0.31 NFU domain protein 4 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G20993.1 Arabidopsis thaliana 0.37 low-molecular-weight cysteine-rich 56 SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT3G20997.1 Arabidopsis thaliana 0.39 low-molecular-weight cysteine-rich 55 SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq AT3G21170.1 Arabidopsis thaliana 0.62 F-box and associated interaction domains-containing protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G21180.1 Arabidopsis thaliana 0.79 autoinhibited Ca(2+)-ATPase 9 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G21240.1 Arabidopsis thaliana 0.44 4-coumarate:CoA ligase 2 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT3G21250.1 Arabidopsis thaliana 0.58 multidrug resistance-associated protein 6 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G21260.2 Arabidopsis thaliana 0.48 Glycolipid transfer protein (GLTP) family protein SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT3G21260.3 Arabidopsis thaliana 0.45 Glycolipid transfer protein (GLTP) family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT3G21280.1 Arabidopsis thaliana 0.56 ubiquitin-specific protease 7 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G21295.1 Arabidopsis thaliana 0.41 Tudor/PWWP/MBT superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G21320.1 Arabidopsis thaliana 0.52 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G21330.1 Arabidopsis thaliana 0.37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR477075:GSM912634: Col-0 RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477076:GSM912635: Col-0 RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT3G21340.1 Arabidopsis thaliana 0.83 Leucine-rich repeat protein kinase family protein SRR364677:GFP sample AT3G21371.1 Arabidopsis thaliana 0.92 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT3G21400.1 Arabidopsis thaliana 0.35 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G21410.1 Arabidopsis thaliana 0.41 F-box and associated interaction domains-containing protein SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G21420.1 Arabidopsis thaliana 0.32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT3G21520.1 Arabidopsis thaliana 0.32 DUF679 domain membrane protein 1 SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT3G21570.1 Arabidopsis thaliana 0.82 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G21600.1 Arabidopsis thaliana 0.45 Senescence/dehydration-associated protein-related SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT3G21640.1 Arabidopsis thaliana 0.37 FKBP-type peptidyl-prolyl cis-trans isomerase family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT3G21650.1 Arabidopsis thaliana 0.38 Protein phosphatase 2A regulatory B subunit family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G21660.1 Arabidopsis thaliana 0.32 UBX domain-containing protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G21700.2 Arabidopsis thaliana 0.33 Ras-related small GTP-binding family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G21700.3 Arabidopsis thaliana 0.83 Ras-related small GTP-binding family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G21730.2 Arabidopsis thaliana 0.40 Dihydroneopterin aldolase SRR1105604:GSM1303977: PDAT_11-12_A; Arabidopsis thaliana; RNA-Seq AT3G21805.1 Arabidopsis thaliana 0.71 snoRNA SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT3G21940.1 Arabidopsis thaliana 0.34 Receptor protein kinase-related SRR1046865:GSM1287130: Arabidopsis thaliana Mt-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046868:GSM1287133: Arabidopsis thaliana No-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G21950.1 Arabidopsis thaliana 0.43 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR970149:GSM1225095: At_mRNA_rep1; Arabidopsis thaliana; RNA-Seq AT3G21980.1 Arabidopsis thaliana 0.40 Domain of unknown function (DUF26) SRR1046850:GSM1287115: Arabidopsis thaliana Ct-1 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G22022.1 Arabidopsis thaliana 0.56 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT3G22030.1 Arabidopsis thaliana 0.75 Receptor protein kinase-related SRR1046850:GSM1287115: Arabidopsis thaliana Ct-1 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G22040.1 Arabidopsis thaliana 0.55 Domain of unknown function (DUF26) SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G22057.1 Arabidopsis thaliana 0.36 Unknown SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT3G22060.1 Arabidopsis thaliana 0.68 Receptor-like protein kinase-related family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G22070.1 Arabidopsis thaliana 0.31 proline-rich family protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G22072.1 Arabidopsis thaliana 0.46 other RNA SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G22100.1 Arabidopsis thaliana 0.45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT3G22142.1 Arabidopsis thaliana 0.36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G22190.2 Arabidopsis thaliana 0.37 IQ-domain 5 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G22235.1 Arabidopsis thaliana 0.39 Unknown SRR446041:Avr.12h.A AT3G22275.1 Arabidopsis thaliana 0.51 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G22420.1 Arabidopsis thaliana 0.44 with no lysine (K) kinase 2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G22420.2 Arabidopsis thaliana 0.31 with no lysine (K) kinase 2 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G22436.1 Arabidopsis thaliana 0.38 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT3G22500.1 Arabidopsis thaliana 0.39 Seed maturation protein SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT3G22510.1 Arabidopsis thaliana 0.71 Pre-rRNA-processing protein TSR2, conserved region SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G22555.1 Arabidopsis thaliana 0.75 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G22723.1 Arabidopsis thaliana 0.38 Unknown SRR392124:GSM852814: mRNA-seq in C24, technical replicate 3; Arabidopsis thaliana; RNA-Seq AT3G22740.1 Arabidopsis thaliana 0.54 homocysteine S-methyltransferase 3 SRR364678:nonGFP sample AT3G22750.1 Arabidopsis thaliana 0.74 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G22760.1 Arabidopsis thaliana 0.58 Tesmin/TSO1-like CXC domain-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G22840.1 Arabidopsis thaliana 0.60 Chlorophyll A-B binding family protein SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT3G22880.1 Arabidopsis thaliana 0.31 DNA repair (Rad51) family protein SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G22910.1 Arabidopsis thaliana 0.49 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G22940.1 Arabidopsis thaliana 0.44 F-box associated ubiquitination effector family protein SRR1046866:GSM1287131: Arabidopsis thaliana Mt-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G22950.1 Arabidopsis thaliana 0.31 ADP-ribosylation factor C1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G23030.1 Arabidopsis thaliana 0.46 indole-3-acetic acid inducible 2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G23040.1 Arabidopsis thaliana 0.34 Unknown SRR345561:GSM798295: mRNASeq_WT_rep1 SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR477076:GSM912635: Col-0 RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT3G23100.1 Arabidopsis thaliana 0.34 homolog of human DNA ligase iv-binding protein XRCC4 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G23110.1 Arabidopsis thaliana 0.41 receptor like protein 37 SRR1578857:GSM1507897: C24 O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578858:GSM1507898: C24 O3 rep2; Arabidopsis thaliana; RNA-Seq SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT3G23125.1 Arabidopsis thaliana 0.38 MIR173; miRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT3G23150.1 Arabidopsis thaliana 0.46 Signal transduction histidine kinase, hybrid-type, ethylene sensor SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G23160.1 Arabidopsis thaliana 0.37 Protein of unknown function (DUF668) SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT3G23171.1 Arabidopsis thaliana 0.34 Unknown SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G23210.1 Arabidopsis thaliana 0.50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G23220.1 Arabidopsis thaliana 0.52 Integrase-type DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT3G23230.1 Arabidopsis thaliana 0.47 Integrase-type DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G23240.1 Arabidopsis thaliana 0.37 ethylene response factor 1 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT3G23245.1 Arabidopsis thaliana 0.39 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G23250.1 Arabidopsis thaliana 0.53 myb domain protein 15 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G23250.2 Arabidopsis thaliana 0.35 myb domain protein 15 SRR1004833:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 30 minutes Replicate A AT3G23326.1 Arabidopsis thaliana 0.89 MIR853a; miRNA SRR1257407:GSM1371369: infected T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G23330.1 Arabidopsis thaliana 0.35 Tetratricopeptide repeat (TPR)-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G23380.1 Arabidopsis thaliana 0.36 ROP-interactive CRIB motif-containing protein 5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G23460.1 Arabidopsis thaliana 0.49 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR1046862:GSM1287127: Arabidopsis thaliana Ler-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046868:GSM1287133: Arabidopsis thaliana No-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G23470.1 Arabidopsis thaliana 0.40 Cyclopropane-fatty-acyl-phospholipid synthase ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G23540.2 Arabidopsis thaliana 0.32 alpha/beta-Hydrolases superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G23560.1 Arabidopsis thaliana 0.31 MATE efflux family protein SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT3G23605.1 Arabidopsis thaliana 0.34 Ubiquitin-like superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G23610.2 Arabidopsis thaliana 0.32 dual specificity protein phosphatase 1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G23635.1 Arabidopsis thaliana 0.42 ROTUNDIFOLIA like 13 SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other SRR1257398:GSM1371360: mock T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G23637.1 Arabidopsis thaliana 0.96 DVL family protein SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G23690.1 Arabidopsis thaliana 0.33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G23727.1 Arabidopsis thaliana 0.32 SCR-like 12 SRR800753:GSM1111913: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR800754:GSM1111914: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT3G23730.1 Arabidopsis thaliana 0.32 xyloglucan endotransglucosylase/hydrolase 16 SRR1207195:GSM1359147: WT 2; Arabidopsis thaliana; RNA-Seq AT3G23810.1 Arabidopsis thaliana 0.43 S-adenosyl-l-homocysteine (SAH) hydrolase 2 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G23870.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF803) SRR364677:GFP sample SRR364678:nonGFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G23955.1 Arabidopsis thaliana 0.74 F-box family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G23955.2 Arabidopsis thaliana 0.43 F-box family protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G24000.1 Arabidopsis thaliana 0.54 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT3G24068.1 Arabidopsis thaliana 0.31 Plant self-incompatibility protein S1 family SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq AT3G24160.1 Arabidopsis thaliana 0.49 putative type 1 membrane protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G24180.1 Arabidopsis thaliana 0.36 Beta-glucosidase, GBA2 type family protein SRR364677:GFP sample AT3G24210.1 Arabidopsis thaliana 0.54 Ankyrin repeat family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G24216.1 Arabidopsis thaliana 0.58 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT3G24270.1 Arabidopsis thaliana 0.65 pumilio 25 SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G24280.1 Arabidopsis thaliana 0.64 small acidic protein 2 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G24350.1 Arabidopsis thaliana 0.32 syntaxin of plants 32 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G24465.1 Arabidopsis thaliana 0.56 Plant thionin family protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G24500.1 Arabidopsis thaliana 0.34 multiprotein bridging factor 1C SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT3G24510.1 Arabidopsis thaliana 0.31 Defensin-like (DEFL) family protein SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq AT3G24513.1 Arabidopsis thaliana 0.53 Unknown SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G24530.1 Arabidopsis thaliana 0.35 AAA-type ATPase family protein / ankyrin repeat family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G24560.1 Arabidopsis thaliana 0.61 Adenine nucleotide alpha hydrolases-like superfamily protein SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G24560.3 Arabidopsis thaliana 0.70 Adenine nucleotide alpha hydrolases-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G24612.1 Arabidopsis thaliana 0.44 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G24614.1 Arabidopsis thaliana 0.40 snoRNA SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G24615.1 Arabidopsis thaliana 0.46 snoRNA SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT3G24620.1 Arabidopsis thaliana 0.69 RHO guanyl-nucleotide exchange factor 8 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G24715.1 Arabidopsis thaliana 0.75 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G24750.1 Arabidopsis thaliana 0.58 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G24760.1 Arabidopsis thaliana 0.35 Galactose oxidase/kelch repeat superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G24780.1 Arabidopsis thaliana 0.66 Uncharacterised conserved protein UCP015417, vWA SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G25010.1 Arabidopsis thaliana 0.32 receptor like protein 41 SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT3G25011.1 Arabidopsis thaliana 0.50 Unknown SRR960217:GSM1219971: WT_mRNA-Seq (rrp6l1-2 control); Arabidopsis thaliana; RNA-Seq SRR634973:GSM1054091: BP12-2 seedling treated with rapamycin_rep2; Arabidopsis; RNA-Seq AT3G25014.1 Arabidopsis thaliana 0.60 Unknown SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G25050.1 Arabidopsis thaliana 0.44 xyloglucan endotransglucosylase/hydrolase 3 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G25100.1 Arabidopsis thaliana 0.36 cell division cycle 45 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G25165.1 Arabidopsis thaliana 0.73 ralf-like 25 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G25170.1 Arabidopsis thaliana 0.95 ralf-like 26 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G25180.1 Arabidopsis thaliana 0.38 cytochrome P450, family 82, subfamily G, polypeptide 1 SRR446029:Avr 1h A Sample A SRR446032:Vir.1h.B AT3G25180.2 Arabidopsis thaliana 0.39 cytochrome P450, family 82, subfamily G, polypeptide 1 SRR446032:Vir.1h.B AT3G25240.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF506) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G25250.1 Arabidopsis thaliana 0.76 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G25280.1 Arabidopsis thaliana 0.36 Major facilitator superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G25470.1 Arabidopsis thaliana 0.30 bacterial hemolysin-related SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G25490.1 Arabidopsis thaliana 0.68 Protein kinase family protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G25570.1 Arabidopsis thaliana 0.33 Adenosylmethionine decarboxylase family protein SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G25570.2 Arabidopsis thaliana 0.38 Adenosylmethionine decarboxylase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G25580.1 Arabidopsis thaliana 0.44 Thioredoxin superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G25585.4 Arabidopsis thaliana 0.46 aminoalcoholphosphotransferase SRR1046881:GSM1287146: Arabidopsis thaliana Sf-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046931:GSM1287189: Sf-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046932:GSM1287190: Sf-2 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT3G25597.1 Arabidopsis thaliana 0.51 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G25620.2 Arabidopsis thaliana 0.30 ABC-2 type transporter family protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT3G25640.1 Arabidopsis thaliana 0.35 Protein of unknown function, DUF617 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G25690.1 Arabidopsis thaliana 0.41 Hydroxyproline-rich glycoprotein family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G25690.3 Arabidopsis thaliana 0.50 Hydroxyproline-rich glycoprotein family protein SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT3G25700.2 Arabidopsis thaliana 0.42 Eukaryotic aspartyl protease family protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G25750.1 Arabidopsis thaliana 0.48 F-box family protein with a domain of unknown function (DUF295) SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G25800.2 Arabidopsis thaliana 0.40 protein phosphatase 2A subunit A2 SRR627631:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627632:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627655:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627671:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq SRR627676:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq AT3G25810.1 Arabidopsis thaliana 0.95 Terpenoid cyclases/Protein prenyltransferases superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G25855.1 Arabidopsis thaliana 0.37 Copper transport protein family ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G25900.2 Arabidopsis thaliana 0.35 Homocysteine S-methyltransferase family protein SRR627677:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq SRR627678:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq AT3G25900.3 Arabidopsis thaliana 0.36 Homocysteine S-methyltransferase family protein SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G26040.1 Arabidopsis thaliana 0.42 HXXXD-type acyl-transferase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G26080.1 Arabidopsis thaliana 0.41 plastid-lipid associated protein PAP / fibrillin family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G26100.1 Arabidopsis thaliana 0.50 Regulator of chromosome condensation (RCC1) family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT3G26110.1 Arabidopsis thaliana 0.94 Anther-specific protein agp1-like SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G26190.1 Arabidopsis thaliana 0.59 cytochrome P450, family 71, subfamily B, polypeptide 21 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G26200.1 Arabidopsis thaliana 0.46 cytochrome P450, family 71, subfamily B, polypeptide 22 SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G26230.1 Arabidopsis thaliana 0.40 cytochrome P450, family 71, subfamily B, polypeptide 24 SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT3G26270.1 Arabidopsis thaliana 0.58 cytochrome P450, family 71, subfamily B, polypeptide 25 SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G26340.1 Arabidopsis thaliana 0.32 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G26420.1 Arabidopsis thaliana 0.41 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT3G26486.1 Arabidopsis thaliana 0.34 transposable element gene SRR1005391:GSM1242380: cmt3_mRNA_rep1; Arabidopsis thaliana; RNA-Seq SRR1005395:GSM1242384: drm12cmt2_mRNA_rep1; Arabidopsis thaliana; RNA-Seq AT3G26539.1 Arabidopsis thaliana 0.64 Unknown SRR1257399:GSM1371361: infected T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G26550.1 Arabidopsis thaliana 0.30 Cysteine/Histidine-rich C1 domain family protein SRR1144845:be1-3 2 days on SIM AT3G26612.1 Arabidopsis thaliana 0.61 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G26640.1 Arabidopsis thaliana 0.33 Transducin/WD40 repeat-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G26660.1 Arabidopsis thaliana 0.33 LOB domain-containing protein 24 SRR364677:GFP sample AT3G26690.1 Arabidopsis thaliana 0.39 nudix hydrolase homolog 13 SRR364677:GFP sample AT3G26744.1 Arabidopsis thaliana 0.34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G26780.1 Arabidopsis thaliana 0.38 Phosphoglycerate mutase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G26812.1 Arabidopsis thaliana 0.39 MIR169I; miRNA SRR1046922:GSM1287180: Mt-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT3G26813.1 Arabidopsis thaliana 0.43 MIR169J; miRNA SRR1257390:GSM1371352: mock Col0 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G26815.1 Arabidopsis thaliana 0.70 MIR169K; miRNA SRR1257396:GSM1371358: infected NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G26816.1 Arabidopsis thaliana 0.95 MIR169L; miRNA SRR1257396:GSM1371358: infected NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G26818.1 Arabidopsis thaliana 0.36 MIR169M; miRNA SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G26830.1 Arabidopsis thaliana 0.37 Cytochrome P450 superfamily protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G26860.2 Arabidopsis thaliana 0.59 Plant self-incompatibility protein S1 family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G26910.2 Arabidopsis thaliana 0.31 hydroxyproline-rich glycoprotein family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G26922.1 Arabidopsis thaliana 0.55 F-box/RNI-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G26934.1 Arabidopsis thaliana 0.79 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G26960.1 Arabidopsis thaliana 0.32 Pollen Ole e 1 allergen and extensin family protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT3G27000.1 Arabidopsis thaliana 0.46 actin related protein 2 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G27025.1 Arabidopsis thaliana 0.63 Unknown DRR008477:Arabidopsis ibm1-4 mRNA_seq AT3G27060.1 Arabidopsis thaliana 0.50 Ferritin/ribonucleotide reductase-like family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G27070.2 Arabidopsis thaliana 0.82 translocase outer membrane 20-1 SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT3G27100.2 Arabidopsis thaliana 0.34 Unknown SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT3G27120.1 Arabidopsis thaliana 0.30 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1144843:WS 7 days on CIM AT3G27150.1 Arabidopsis thaliana 0.44 Galactose oxidase/kelch repeat superfamily protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G27220.1 Arabidopsis thaliana 0.34 Galactose oxidase/kelch repeat superfamily protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G27250.1 Arabidopsis thaliana 0.32 Unknown SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT3G27280.2 Arabidopsis thaliana 0.53 prohibitin 4 SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G27300.3 Arabidopsis thaliana 0.54 glucose-6-phosphate dehydrogenase 5 SRR364677:GFP sample AT3G27321.1 Arabidopsis thaliana 0.33 Unknown SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G27328.1 Arabidopsis thaliana 0.81 Unknown SRR1037376:RNA-Seq-RNA-Seq_replicate_2 AT3G27340.2 Arabidopsis thaliana 0.57 Unknown SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G27360.1 Arabidopsis thaliana 0.39 Histone superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G27410.1 Arabidopsis thaliana 0.34 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G27416.1 Arabidopsis thaliana 0.44 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G27460.1 Arabidopsis thaliana 0.35 SGF29 tudor-like domain SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm AT3G27500.1 Arabidopsis thaliana 0.48 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G27503.1 Arabidopsis thaliana 0.31 SCR-like 19 SRR1046862:GSM1287127: Arabidopsis thaliana Ler-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046889:GSM1287154: Arabidopsis thaliana Ws-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G27520.1 Arabidopsis thaliana 0.42 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G27640.1 Arabidopsis thaliana 0.71 Transducin/WD40 repeat-like superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G27650.1 Arabidopsis thaliana 0.34 LOB domain-containing protein 25 SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT3G27710.1 Arabidopsis thaliana 0.77 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G27800.1 Arabidopsis thaliana 0.34 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G27830.1 Arabidopsis thaliana 0.51 ribosomal protein L12-A SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G27831.1 Arabidopsis thaliana 0.54 Gamma-thionin family protein SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G27840.1 Arabidopsis thaliana 0.47 ribosomal protein L12-B SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G27880.1 Arabidopsis thaliana 0.55 Protein of unknown function (DUF1645) SRR364678:nonGFP sample AT3G27950.1 Arabidopsis thaliana 0.43 GDSL-like Lipase/Acylhydrolase superfamily protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G28007.1 Arabidopsis thaliana 0.33 Nodulin MtN3 family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G28120.1 Arabidopsis thaliana 0.73 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G28153.1 Arabidopsis thaliana 0.47 transposable element gene SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT3G28180.1 Arabidopsis thaliana 0.45 Cellulose-synthase-like C4 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G28190.1 Arabidopsis thaliana 0.77 Unknown SRR364678:nonGFP sample AT3G28193.1 Arabidopsis thaliana 0.68 Unknown SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT3G28210.1 Arabidopsis thaliana 0.73 zinc finger (AN1-like) family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G28243.1 Arabidopsis thaliana 0.94 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT3G28250.1 Arabidopsis thaliana 0.51 Carbohydrate-binding X8 domain superfamily protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT3G28291.1 Arabidopsis thaliana 0.39 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT3G28310.1 Arabidopsis thaliana 0.67 Protein of unknown function (DUF677) SRR364677:GFP sample AT3G28315.1 Arabidopsis thaliana 0.53 transposable element gene SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G28320.1 Arabidopsis thaliana 0.39 Protein of unknown function (DUF677) SRR931758: SRR931759: SRR931760: SRR364677:GFP sample SRR364678:nonGFP sample SRR1144844:WS 2 days on SIM AT3G28321.1 Arabidopsis thaliana 0.93 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT3G28330.1 Arabidopsis thaliana 0.59 F-box family protein-related ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G28340.1 Arabidopsis thaliana 0.32 galacturonosyltransferase-like 10 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G28430.1 Arabidopsis thaliana 0.52 Unknown SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G28440.1 Arabidopsis thaliana 0.34 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR307074:GSM756824: Ler x Col endosperm RNA-seq AT3G28490.1 Arabidopsis thaliana 0.43 Oxoglutarate/iron-dependent oxygenase SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G28520.1 Arabidopsis thaliana 0.43 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT3G28530.1 Arabidopsis thaliana 1.00 UDP-glucose 4-epimerases SRR1013891:responses to BL AT3G28550.1 Arabidopsis thaliana 0.47 Proline-rich extensin-like family protein SRR364677:GFP sample AT3G28590.1 Arabidopsis thaliana 0.43 Unknown SRR1652316:atrtf2-2He SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT3G28630.1 Arabidopsis thaliana 0.62 Protein of unknown function (DUF569) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G28660.1 Arabidopsis thaliana 0.31 Tetratricopeptide repeat (TPR)-like superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G28674.1 Arabidopsis thaliana 0.72 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G28700.2 Arabidopsis thaliana 0.32 Protein of unknown function (DUF185) SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G28710.1 Arabidopsis thaliana 0.32 ATPase, V0/A0 complex, subunit C/D ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G28715.1 Arabidopsis thaliana 0.31 ATPase, V0/A0 complex, subunit C/D ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G28750.1 Arabidopsis thaliana 0.95 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G28760.2 Arabidopsis thaliana 0.33 Unknown SRR515338:GSM951359: rve8_mock_2; Arabidopsis thaliana; RNA-Seq AT3G28770.1 Arabidopsis thaliana 0.58 Protein of unknown function (DUF1216) SRR1046871:GSM1287136: Arabidopsis thaliana Oy-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G28780.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF1216) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G28790.1 Arabidopsis thaliana 0.47 Protein of unknown function (DUF1216) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G28810.1 Arabidopsis thaliana 0.87 Protein of unknown function (DUF1216) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G28830.1 Arabidopsis thaliana 0.75 Protein of unknown function (DUF1216) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G28920.1 Arabidopsis thaliana 0.45 homeobox protein 34 DRR008476: AT3G28980.1 Arabidopsis thaliana 0.45 Protein of unknown function (DUF1216) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G28990.1 Arabidopsis thaliana 0.39 Plant protein 1589 of unknown function SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G29000.1 Arabidopsis thaliana 0.75 Calcium-binding EF-hand family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G29035.1 Arabidopsis thaliana 0.32 NAC domain containing protein 3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G29060.1 Arabidopsis thaliana 0.86 EXS (ERD1/XPR1/SYG1) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G29075.1 Arabidopsis thaliana 0.33 glycine-rich protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G29078.1 Arabidopsis thaliana 0.38 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G29080.1 Arabidopsis thaliana 0.42 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G29110.1 Arabidopsis thaliana 0.51 Terpenoid cyclases/Protein prenyltransferases superfamily protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G29140.1 Arabidopsis thaliana 0.31 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G29152.1 Arabidopsis thaliana 0.32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G29160.2 Arabidopsis thaliana 0.30 SNF1 kinase homolog 11 SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G29180.2 Arabidopsis thaliana 0.68 Protein of unknown function (DUF1336) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G29185.2 Arabidopsis thaliana 0.35 Domain of unknown function (DUF3598) SRR515335:GSM951358: rve8_mock_1; Arabidopsis thaliana; RNA-Seq SRR515336:GSM951358: rve8_mock_1; Arabidopsis thaliana; RNA-Seq AT3G29210.1 Arabidopsis thaliana 0.56 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G29250.1 Arabidopsis thaliana 0.60 NAD(P)-binding Rossmann-fold superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G29252.1 Arabidopsis thaliana 0.43 Unknown SRR926211:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 2 AT3G29270.1 Arabidopsis thaliana 0.44 RING/U-box superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G29360.1 Arabidopsis thaliana 0.61 UDP-glucose 6-dehydrogenase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G29420.1 Arabidopsis thaliana 0.77 geranylgeranyl pyrophosphate synthase-related / GGPP synthetase-related / farnesyltranstransferase-related SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq AT3G29430.1 Arabidopsis thaliana 0.34 Terpenoid synthases superfamily protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G29431.1 Arabidopsis thaliana 0.93 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT3G29545.1 Arabidopsis thaliana 0.65 transposable element gene SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A AT3G29570.1 Arabidopsis thaliana 0.56 Unknown SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT3G29575.4 Arabidopsis thaliana 0.49 ABI five binding protein 3 SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT3G29590.1 Arabidopsis thaliana 0.58 HXXXD-type acyl-transferase family protein SRR847505:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847506:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicin SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT3G29600.1 Arabidopsis thaliana 0.61 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G29633.1 Arabidopsis thaliana 0.35 Unknown SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT3G29635.1 Arabidopsis thaliana 0.30 HXXXD-type acyl-transferase family protein SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G29644.2 Arabidopsis thaliana 0.80 other RNA SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G29730.1 Arabidopsis thaliana 0.34 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G29732.1 Arabidopsis thaliana 0.32 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G29762.1 Arabidopsis thaliana 0.33 Unknown SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G29780.1 Arabidopsis thaliana 0.52 ralf-like 27 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G29791.1 Arabidopsis thaliana 0.31 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G30180.1 Arabidopsis thaliana 0.33 brassinosteroid-6-oxidase 2 SRR477075:GSM912634: Col-0 RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477076:GSM912635: Col-0 RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR477079:GSM912638: pifq RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477080:GSM912639: pifq RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR1019436:GSM1252262: Col-0 RNA-Seq rep 1; Arabidopsis thaliana; RNA-Seq SRR1019437:GSM1252263: Col-0 RNA-Seq rep 2; Arabidopsis thaliana; RNA-Seq SRR1019440:GSM1252266: iaa3 RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019441:GSM1252267: iaa3 RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR402997:GSM867677: Col_PAC_PPZ_GA; Arabidopsis thaliana; RNA-Seq SRR515492:GSM951967: Col_PAC_PPZ GA repeat; Arabidopsis thaliana; RNA-Seq SRR402996:GSM867676: Col_PAC_PPZ; Arabidopsis thaliana; RNA-Seq SRR515491:GSM951966: Col_PAC_PPZ repeat; Arabidopsis thaliana; RNA-Seq AT3G30247.1 Arabidopsis thaliana 0.40 Protein of unknown function (DUF784) SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq SRR388669:GSM847338: WT-Flower-RNAseq-2; Arabidopsis thaliana; RNA-Seq AT3G30390.2 Arabidopsis thaliana 0.32 Transmembrane amino acid transporter family protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT3G30391.1 Arabidopsis thaliana 0.81 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G30415.1 Arabidopsis thaliana 0.38 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G30456.1 Arabidopsis thaliana 0.62 Unknown SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT3G30510.1 Arabidopsis thaliana 0.31 transposable element gene SRR501611:GSM938357: mom1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT3G30580.1 Arabidopsis thaliana 0.46 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G30582.1 Arabidopsis thaliana 0.35 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G30610.1 Arabidopsis thaliana 0.38 transposable element gene SRR501600:GSM938348: met1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G30620.1 Arabidopsis thaliana 0.56 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT3G30645.1 Arabidopsis thaliana 0.80 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G30650.1 Arabidopsis thaliana 0.30 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G30670.1 Arabidopsis thaliana 0.31 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G30705.1 Arabidopsis thaliana 0.53 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G30710.1 Arabidopsis thaliana 0.40 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G30720.1 Arabidopsis thaliana 0.41 qua-quine starch SRR627675:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq SRR627676:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq AT3G30730.1 Arabidopsis thaliana 0.66 Unknown SRR1652316:atrtf2-2He AT3G30733.1 Arabidopsis thaliana 0.37 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G30740.1 Arabidopsis thaliana 0.74 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G30751.1 Arabidopsis thaliana 0.42 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G30767.1 Arabidopsis thaliana 0.37 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G30768.1 Arabidopsis thaliana 0.60 Unknown SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G30775.1 Arabidopsis thaliana 0.33 Methylenetetrahydrofolate reductase family protein SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq AT3G30812.1 Arabidopsis thaliana 0.42 Unknown SRR307075:GSM756824: Ler x Col endosperm RNA-seq AT3G30816.1 Arabidopsis thaliana 0.49 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G30820.1 Arabidopsis thaliana 0.38 Arabidopsis retrotransposon ORF-1 protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G30830.1 Arabidopsis thaliana 0.54 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G30843.1 Arabidopsis thaliana 0.81 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G30844.1 Arabidopsis thaliana 0.39 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR1159840:GSM1321713: Set_2_bio_replicate_2-morc6mom1; Arabidopsis thaliana; RNA-Seq SRR493042:GSM925650: crh6-1 mRNA EMS batch 1; Arabidopsis thaliana; RNA-Seq SRR493046:GSM925654: crh6-1 mRNA EMS batch 2; Arabidopsis thaliana; RNA-Seq SRR924661:hda6 polV mutant polyA RNA, non-stranded AT3G30849.1 Arabidopsis thaliana 0.92 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G30875.1 Arabidopsis thaliana 0.31 Unknown SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G31051.1 Arabidopsis thaliana 0.60 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT3G31068.1 Arabidopsis thaliana 0.43 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT3G31161.1 Arabidopsis thaliana 0.52 Unknown SRR364677:GFP sample SRR1257403:GSM1371365: infected Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G31401.1 Arabidopsis thaliana 0.31 Unknown ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G31410.1 Arabidopsis thaliana 0.30 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G31540.1 Arabidopsis thaliana 0.52 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G31908.1 Arabidopsis thaliana 0.52 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G31920.1 Arabidopsis thaliana 0.37 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G31950.1 Arabidopsis thaliana 0.45 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G32040.1 Arabidopsis thaliana 0.43 Terpenoid synthases superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G32052.1 Arabidopsis thaliana 0.39 Unknown SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G32080.1 Arabidopsis thaliana 0.32 transposable element gene SRR1046939:GSM1287197: Wu-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046940:GSM1287198: Wu-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT3G32100.1 Arabidopsis thaliana 0.58 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G32118.1 Arabidopsis thaliana 0.53 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G32210.1 Arabidopsis thaliana 0.68 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G32313.1 Arabidopsis thaliana 0.43 Unknown SRR307069:GSM756822: Col x Ler endosperm RNA-seq SRR307070:GSM756822: Col x Ler endosperm RNA-seq AT3G32360.1 Arabidopsis thaliana 0.42 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G32371.1 Arabidopsis thaliana 0.65 Unknown SRR307069:GSM756822: Col x Ler endosperm RNA-seq SRR307070:GSM756822: Col x Ler endosperm RNA-seq AT3G32415.1 Arabidopsis thaliana 0.95 transposable element gene SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT3G32677.1 Arabidopsis thaliana 0.52 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G32902.1 Arabidopsis thaliana 0.51 transposable element gene ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT3G32905.1 Arabidopsis thaliana 0.38 Unknown SRR501600:GSM938348: met1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT3G32964.1 Arabidopsis thaliana 0.50 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G32990.1 Arabidopsis thaliana 0.40 Unknown SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT3G33000.1 Arabidopsis thaliana 0.55 Unknown SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq AT3G33008.1 Arabidopsis thaliana 0.43 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G33058.1 Arabidopsis thaliana 0.59 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G33064.1 Arabidopsis thaliana 0.52 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G33067.1 Arabidopsis thaliana 0.32 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G33073.1 Arabidopsis thaliana 0.32 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G33080.1 Arabidopsis thaliana 0.55 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G33085.1 Arabidopsis thaliana 0.31 transposable element gene SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G33094.1 Arabidopsis thaliana 0.67 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G33127.1 Arabidopsis thaliana 0.39 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G33145.1 Arabidopsis thaliana 0.45 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G33151.1 Arabidopsis thaliana 0.45 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G33157.1 Arabidopsis thaliana 0.45 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G33166.1 Arabidopsis thaliana 0.40 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G33530.1 Arabidopsis thaliana 0.38 Transducin family protein / WD-40 repeat family protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G36659.1 Arabidopsis thaliana 0.93 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G41762.1 Arabidopsis thaliana 0.40 Unknown SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT3G42110.1 Arabidopsis thaliana 0.48 transposable element gene SRR1046856:GSM1287121: Arabidopsis thaliana Hi-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G42253.1 Arabidopsis thaliana 0.95 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G42254.1 Arabidopsis thaliana 0.43 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G42260.1 Arabidopsis thaliana 0.40 transposable element gene SRR501600:GSM938348: met1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT3G42385.1 Arabidopsis thaliana 0.66 Unknown SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G42450.1 Arabidopsis thaliana 0.81 transposable element gene SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G42473.1 Arabidopsis thaliana 0.39 low-molecular-weight cysteine-rich 47 SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G42475.1 Arabidopsis thaliana 0.37 Unknown ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT3G42520.1 Arabidopsis thaliana 0.34 transposable element gene SRR1061358:GSM1298726: FB1_HiSeqMplex; Arabidopsis thaliana; RNA-Seq SRR800753:GSM1111913: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR800754:GSM1111914: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT3G42557.1 Arabidopsis thaliana 0.50 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G42628.1 Arabidopsis thaliana 0.40 phosphoenolpyruvate carboxylase-related / PEP carboxylase-related SRR634973:GSM1054091: BP12-2 seedling treated with rapamycin_rep2; Arabidopsis; RNA-Seq AT3G42640.1 Arabidopsis thaliana 0.92 H(+)-ATPase 8 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G42712.1 Arabidopsis thaliana 0.37 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G42880.1 Arabidopsis thaliana 0.70 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G43000.1 Arabidopsis thaliana 0.76 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43060.1 Arabidopsis thaliana 0.38 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43120.1 Arabidopsis thaliana 0.84 SAUR-like auxin-responsive protein family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G43128.1 Arabidopsis thaliana 0.31 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G43148.1 Arabidopsis thaliana 0.36 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43150.1 Arabidopsis thaliana 0.41 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G43153.1 Arabidopsis thaliana 0.44 cAMP-dependent protein kinase inhibitor-related ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT3G43160.1 Arabidopsis thaliana 0.36 maternal effect embryo arrest 38 SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43190.1 Arabidopsis thaliana 0.35 sucrose synthase 4 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43280.1 Arabidopsis thaliana 0.31 Unknown SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G43402.1 Arabidopsis thaliana 0.75 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G43433.1 Arabidopsis thaliana 0.39 transposable element gene SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G43440.1 Arabidopsis thaliana 0.46 jasmonate-zim-domain protein 11 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G43505.1 Arabidopsis thaliana 0.36 low-molecular-weight cysteine-rich 30 SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G43530.1 Arabidopsis thaliana 0.61 transposable element gene SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43571.1 Arabidopsis thaliana 0.42 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43572.1 Arabidopsis thaliana 0.37 Unknown SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT3G43575.1 Arabidopsis thaliana 0.39 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G43623.1 Arabidopsis thaliana 0.41 Unknown SRR1508377:GSM1429458: Hen-16-Input1; Arabidopsis thaliana; RNA-Seq ERR351335:arabidopsis_thaliana_floral_meristem_atlas SRR1046914:GSM1287172: Edi-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR1046941:GSM1287199: Zu-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G43680.1 Arabidopsis thaliana 0.58 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43682.1 Arabidopsis thaliana 0.34 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43700.1 Arabidopsis thaliana 0.42 BTB-POZ and MATH domain 6 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G43826.1 Arabidopsis thaliana 0.53 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT3G43829.1 Arabidopsis thaliana 0.59 Unknown SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT3G43860.1 Arabidopsis thaliana 0.95 glycosyl hydrolase 9A4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G43863.1 Arabidopsis thaliana 0.38 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G43870.1 Arabidopsis thaliana 0.51 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G43970.1 Arabidopsis thaliana 0.41 Unknown SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo AT3G44006.1 Arabidopsis thaliana 0.75 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G44070.1 Arabidopsis thaliana 0.38 Glycosyl hydrolase family 35 protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G44091.1 Arabidopsis thaliana 1.00 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G44110.1 Arabidopsis thaliana 0.44 DNAJ homologue 3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G44120.1 Arabidopsis thaliana 0.45 F-box and associated interaction domains-containing protein SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G44171.1 Arabidopsis thaliana 0.62 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT3G44190.1 Arabidopsis thaliana 0.33 FAD/NAD(P)-binding oxidoreductase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G44200.1 Arabidopsis thaliana 0.32 NIMA (never in mitosis, gene A)-related 6 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G44310.2 Arabidopsis thaliana 0.45 nitrilase 1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G44320.1 Arabidopsis thaliana 0.40 nitrilase 3 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G44350.1 Arabidopsis thaliana 0.36 NAC domain containing protein 61 SRR392122:GSM852812: mRNA-seq in C24, technical replicate 1; Arabidopsis thaliana; RNA-Seq SRR392124:GSM852814: mRNA-seq in C24, technical replicate 3; Arabidopsis thaliana; RNA-Seq AT3G44350.2 Arabidopsis thaliana 0.30 NAC domain containing protein 61 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G44370.1 Arabidopsis thaliana 0.34 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G44400.2 Arabidopsis thaliana 0.38 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G44440.1 Arabidopsis thaliana 0.49 Unknown SRR1257407:GSM1371369: infected T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G44540.1 Arabidopsis thaliana 0.52 fatty acid reductase 4 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT3G44550.1 Arabidopsis thaliana 0.67 fatty acid reductase 5 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT3G44560.1 Arabidopsis thaliana 0.53 fatty acid reductase 8 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G44610.1 Arabidopsis thaliana 0.37 Protein kinase superfamily protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G44630.1 Arabidopsis thaliana 0.61 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G44630.2 Arabidopsis thaliana 0.78 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G44630.3 Arabidopsis thaliana 0.64 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G44680.1 Arabidopsis thaliana 0.30 histone deacetylase 9 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G44690.1 Arabidopsis thaliana 0.49 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G44718.1 Arabidopsis thaliana 0.52 Plant thionin family protein SRR1046859:GSM1287124: Arabidopsis thaliana Kn-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR314818:GSM764082: Can_0_floral_bud_validation_rep1 SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G44783.1 Arabidopsis thaliana 0.33 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G44790.1 Arabidopsis thaliana 0.33 TRAF-like family protein SRR609412:RNAseq data from activation tagging mutant of OSD1 in Ws AT3G44920.1 Arabidopsis thaliana 0.76 cation/H+ exchanger 11 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G44930.1 Arabidopsis thaliana 0.96 cation/H+ exchanger 10 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G45060.1 Arabidopsis thaliana 0.44 high affinity nitrate transporter 2.6 SRR364677:GFP sample AT3G45080.1 Arabidopsis thaliana 0.40 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1046863:GSM1287128: Arabidopsis thaliana Ler-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G45090.1 Arabidopsis thaliana 0.49 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G45110.1 Arabidopsis thaliana 0.31 Unknown SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G45160.1 Arabidopsis thaliana 0.31 Putative membrane lipoprotein ERR377679:Illumina HiSeq 2500 sequencing AT3G45180.1 Arabidopsis thaliana 0.58 Ubiquitin-like superfamily protein SRR1257398:GSM1371360: mock T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G45245.1 Arabidopsis thaliana 0.38 ECA1 gametogenesis related family protein SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G45252.1 Arabidopsis thaliana 0.49 ECA1 gametogenesis related family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G45280.1 Arabidopsis thaliana 0.52 syntaxin of plants 72 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G45360.1 Arabidopsis thaliana 0.38 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT3G45430.1 Arabidopsis thaliana 0.45 Concanavalin A-like lectin protein kinase family protein SRR364678:nonGFP sample AT3G45525.1 Arabidopsis thaliana 0.68 Unknown SRR493041:GSM925649: cmt3-11 crt1-3 mRNA EMS batch 1; Arabidopsis thaliana; RNA-Seq AT3G45590.1 Arabidopsis thaliana 0.62 splicing endonuclease 1 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G45640.1 Arabidopsis thaliana 0.52 mitogen-activated protein kinase 3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G45660.1 Arabidopsis thaliana 0.65 Major facilitator superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G45673.1 Arabidopsis thaliana 0.95 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT3G45730.1 Arabidopsis thaliana 0.37 Unknown SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G45820.1 Arabidopsis thaliana 0.65 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G45830.1 Arabidopsis thaliana 0.33 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G45870.1 Arabidopsis thaliana 0.55 nodulin MtN21 /EamA-like transporter family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G45870.2 Arabidopsis thaliana 0.49 nodulin MtN21 /EamA-like transporter family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G45955.1 Arabidopsis thaliana 0.35 pre-tRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT3G45960.2 Arabidopsis thaliana 0.39 expansin-like A3 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G45990.1 Arabidopsis thaliana 0.50 Cofilin/tropomyosin-type actin-binding protein family SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G46010.2 Arabidopsis thaliana 0.40 actin depolymerizing factor 1 SRR609414:RNAseq data from activation tagging mutant of OSD1 in bon1-2 AT3G46080.1 Arabidopsis thaliana 0.37 C2H2-type zinc finger family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G46086.1 Arabidopsis thaliana 0.45 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR1583556:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT3G46090.1 Arabidopsis thaliana 0.31 C2H2 and C2HC zinc fingers superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G46130.1 Arabidopsis thaliana 0.39 myb domain protein 48 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT3G46130.2 Arabidopsis thaliana 0.31 myb domain protein 48 SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT3G46130.3 Arabidopsis thaliana 0.35 myb domain protein 48 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT3G46150.1 Arabidopsis thaliana 0.44 Unknown SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G46160.1 Arabidopsis thaliana 0.43 Protein kinase superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G46180.1 Arabidopsis thaliana 0.46 UDP-galactose transporter 5 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G46190.1 Arabidopsis thaliana 0.33 TRAF-like family protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G46280.1 Arabidopsis thaliana 0.57 protein kinase-related ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G46380.1 Arabidopsis thaliana 0.44 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT3G46400.1 Arabidopsis thaliana 0.51 Leucine-rich repeat protein kinase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G46440.1 Arabidopsis thaliana 0.37 UDP-XYL synthase 5 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G46440.2 Arabidopsis thaliana 0.40 UDP-XYL synthase 5 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G46450.2 Arabidopsis thaliana 0.50 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G46460.1 Arabidopsis thaliana 0.34 ubiquitin-conjugating enzyme 13 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G46520.1 Arabidopsis thaliana 0.84 actin-12 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G46600.1 Arabidopsis thaliana 0.47 GRAS family transcription factor SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G46600.2 Arabidopsis thaliana 0.31 GRAS family transcription factor SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT3G46600.3 Arabidopsis thaliana 0.60 GRAS family transcription factor SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G46668.1 Arabidopsis thaliana 0.51 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G46770.1 Arabidopsis thaliana 0.32 AP2/B3-like transcriptional factor family protein SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT3G46770.2 Arabidopsis thaliana 0.67 AP2/B3-like transcriptional factor family protein SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G46780.1 Arabidopsis thaliana 0.35 plastid transcriptionally active 16 SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518044:GSM954621: H2AZ_WT_3_RNA; Arabidopsis thaliana; RNA-Seq AT3G46830.1 Arabidopsis thaliana 0.45 RAB GTPase homolog A2C ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G46875.1 Arabidopsis thaliana 0.50 pre-tRNA SRR671946:GSM1077432: Root_polyA_KCl_Control_rep1; Arabidopsis thaliana; RNA-Seq AT3G46890.1 Arabidopsis thaliana 0.31 Unknown SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT3G46904.1 Arabidopsis thaliana 0.50 Unknown SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT3G47030.1 Arabidopsis thaliana 0.42 F-box and associated interaction domains-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G47050.2 Arabidopsis thaliana 0.62 Glycosyl hydrolase family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G47130.1 Arabidopsis thaliana 0.78 F-box associated ubiquitination effector family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G47220.1 Arabidopsis thaliana 0.33 phosphatidylinositol-speciwc phospholipase C9 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G47260.1 Arabidopsis thaliana 0.58 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G47341.1 Arabidopsis thaliana 0.69 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT3G47342.1 Arabidopsis thaliana 0.32 snoRNA SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G47347.1 Arabidopsis thaliana 0.41 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G47350.1 Arabidopsis thaliana 0.38 hydroxysteroid dehydrogenase 2 SRR1046856:GSM1287121: Arabidopsis thaliana Hi-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G47370.3 Arabidopsis thaliana 0.41 Ribosomal protein S10p/S20e family protein SRR1046914:GSM1287172: Edi-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT3G47380.1 Arabidopsis thaliana 0.30 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR1581016:SAMN02741910 AT3G47440.1 Arabidopsis thaliana 0.86 tonoplast intrinsic protein 5;1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G47490.2 Arabidopsis thaliana 0.56 HNH endonuclease SRR1004833:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 30 minutes Replicate A AT3G47543.1 Arabidopsis thaliana 0.83 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G47550.1 Arabidopsis thaliana 0.43 RING/FYVE/PHD zinc finger superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT3G47550.2 Arabidopsis thaliana 0.37 RING/FYVE/PHD zinc finger superfamily protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G47660.1 Arabidopsis thaliana 0.61 Regulator of chromosome condensation (RCC1) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G47670.1 Arabidopsis thaliana 0.44 Plant invertase/pectin methylesterase inhibitor superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G47700.1 Arabidopsis thaliana 0.44 RINT-1 / TIP-1 family ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G47720.1 Arabidopsis thaliana 0.45 similar to RCD one 4 SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G47730.1 Arabidopsis thaliana 0.50 ATP-binding cassette A2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G47740.1 Arabidopsis thaliana 0.59 ABC2 homolog 2 SRR364677:GFP sample AT3G47810.2 Arabidopsis thaliana 0.65 Calcineurin-like metallo-phosphoesterase superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G47820.1 Arabidopsis thaliana 0.33 PLANT U-BOX 39 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G47836.2 Arabidopsis thaliana 0.66 Unknown SRR345563:GSM798297: mRNASeq_skip_rep1 AT3G47910.1 Arabidopsis thaliana 0.33 Ubiquitin carboxyl-terminal hydrolase-related protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G47930.1 Arabidopsis thaliana 0.37 L-galactono-1,4-lactone dehydrogenase SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G48000.1 Arabidopsis thaliana 0.36 aldehyde dehydrogenase 2B4 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G48010.1 Arabidopsis thaliana 0.59 cyclic nucleotide-gated channel 16 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G48057.1 Arabidopsis thaliana 0.41 MIR843a; miRNA SRR1046882:GSM1287147: Arabidopsis thaliana Sf-2 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G48058.1 Arabidopsis thaliana 0.94 Unknown SRR1257397:GSM1371359: mock T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G48070.2 Arabidopsis thaliana 0.39 RING/U-box superfamily protein ERR588045:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G48131.1 Arabidopsis thaliana 0.38 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR1005396:GSM1242385: drm12cmt2_mRNA_rep2; Arabidopsis thaliana; RNA-Seq AT3G48160.2 Arabidopsis thaliana 0.56 DP-E2F-like 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G48180.1 Arabidopsis thaliana 0.39 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT3G48208.1 Arabidopsis thaliana 0.36 Plant thionin family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G48209.1 Arabidopsis thaliana 0.32 Plant thionin family protein SRR307069:GSM756822: Col x Ler endosperm RNA-seq SRR307070:GSM756822: Col x Ler endosperm RNA-seq SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT3G48231.1 Arabidopsis thaliana 0.34 low-molecular-weight cysteine-rich 48 SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G48237.1 Arabidopsis thaliana 0.45 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G48240.1 Arabidopsis thaliana 0.35 Octicosapeptide/Phox/Bem1p family protein SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G48260.1 Arabidopsis thaliana 0.43 with no lysine (K) kinase 3 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G48340.1 Arabidopsis thaliana 0.50 Cysteine proteinases superfamily protein SRR364677:GFP sample SRR364678:nonGFP sample AT3G48350.1 Arabidopsis thaliana 0.37 Cysteine proteinases superfamily protein SRR974751:GSM1226367: mRNASS-L4h_2; Arabidopsis thaliana; RNA-Seq SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT3G48400.1 Arabidopsis thaliana 0.46 Cysteine/Histidine-rich C1 domain family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G48450.1 Arabidopsis thaliana 0.45 RPM1-interacting protein 4 (RIN4) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G48490.1 Arabidopsis thaliana 0.53 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G48510.1 Arabidopsis thaliana 0.38 Unknown SRR1144845:be1-3 2 days on SIM AT3G48580.2 Arabidopsis thaliana 0.35 xyloglucan endotransglucosylase/hydrolase 11 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT3G48600.2 Arabidopsis thaliana 0.31 SWIB complex BAF60b domain-containing protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G48630.1 Arabidopsis thaliana 0.37 Unknown SRR609416:RNAseq data from activation tagging mutant of OSD1 in bon1-2 AT3G48770.1 Arabidopsis thaliana 0.67 DNA binding;ATP binding SRR1013918:responses to BL SRR1013919:responses to BL SRR1013921:responses to BL SRR1013922:responses to BL SRR1013923:responses to BL SRR1013925:responses to BL AT3G48780.1 Arabidopsis thaliana 0.35 serine palmitoyltransferase 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G48850.1 Arabidopsis thaliana 0.39 phosphate transporter 3;2 SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G48860.1 Arabidopsis thaliana 0.41 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT3G48890.1 Arabidopsis thaliana 0.39 membrane-associated progesterone binding protein 3 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G48940.1 Arabidopsis thaliana 0.38 Remorin family protein SRR364677:GFP sample AT3G49010.1 Arabidopsis thaliana 0.60 breast basic conserved 1 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G49010.3 Arabidopsis thaliana 0.31 breast basic conserved 1 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G49010.4 Arabidopsis thaliana 0.34 breast basic conserved 1 SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR949989:early shade responses in Arabidopsis adult plants (Col, 4 hr sun) SRR949993:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G49040.1 Arabidopsis thaliana 0.58 F-box/RNI-like superfamily protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G49110.1 Arabidopsis thaliana 0.45 peroxidase CA SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G49115.1 Arabidopsis thaliana 0.47 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G49120.1 Arabidopsis thaliana 0.35 peroxidase CB SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G49130.1 Arabidopsis thaliana 0.31 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein SRR1598767:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT3G49170.1 Arabidopsis thaliana 0.42 Tetratricopeptide repeat (TPR)-like superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G49260.3 Arabidopsis thaliana 0.49 IQ-domain 21 SRR949991:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) AT3G49270.1 Arabidopsis thaliana 0.54 Unknown SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT3G49270.2 Arabidopsis thaliana 0.67 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT3G49270.3 Arabidopsis thaliana 0.63 Unknown SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT3G49300.1 Arabidopsis thaliana 0.40 proline-rich family protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G49340.1 Arabidopsis thaliana 0.41 Cysteine proteinases superfamily protein SRR934391:GSM1185649: Sample 1 (3785); Arabidopsis thaliana; RNA-Seq AT3G49350.1 Arabidopsis thaliana 0.38 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G49370.1 Arabidopsis thaliana 0.32 Calcium-dependent protein kinase (CDPK) family protein SRR364677:GFP sample AT3G49390.2 Arabidopsis thaliana 0.36 CTC-interacting domain 10 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G49450.1 Arabidopsis thaliana 0.90 F-box and associated interaction domains-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G49460.1 Arabidopsis thaliana 0.37 Unknown SRR1046924:GSM1287182: No-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR1286088:P-_WT_R2 SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR479033:GSM913711: ago4_floral_mRNA; Arabidopsis thaliana; RNA-Seq SRR479034:GSM913712: drm2_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT3G49510.1 Arabidopsis thaliana 0.44 F-box family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G49520.1 Arabidopsis thaliana 0.35 F-box and associated interaction domains-containing protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT3G49530.1 Arabidopsis thaliana 0.43 NAC domain containing protein 62 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G49540.1 Arabidopsis thaliana 0.75 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G49551.1 Arabidopsis thaliana 0.35 Unknown SRR1257390:GSM1371352: mock Col0 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G49570.1 Arabidopsis thaliana 0.61 response to low sulfur 3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G49580.1 Arabidopsis thaliana 0.58 response to low sulfur 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G49580.2 Arabidopsis thaliana 0.35 response to low sulfur 1 SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT3G49590.3 Arabidopsis thaliana 0.32 Autophagy-related protein 13 ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT3G49630.1 Arabidopsis thaliana 0.44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR364678:nonGFP sample AT3G49640.1 Arabidopsis thaliana 0.42 Aldolase-type TIM barrel family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G49690.1 Arabidopsis thaliana 0.52 myb domain protein 84 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT3G49720.2 Arabidopsis thaliana 0.37 Unknown SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G49744.1 Arabidopsis thaliana 0.76 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT3G49770.1 Arabidopsis thaliana 0.61 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G49796.1 Arabidopsis thaliana 0.75 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G49845.1 Arabidopsis thaliana 0.61 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G49860.1 Arabidopsis thaliana 0.32 ADP-ribosylation factor-like A1B SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G49870.1 Arabidopsis thaliana 0.75 ADP-ribosylation factor-like A1C SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G49900.2 Arabidopsis thaliana 0.37 Phototropic-responsive NPH3 family protein SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA AT3G49930.1 Arabidopsis thaliana 0.40 C2H2 and C2HC zinc fingers superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G50020.1 Arabidopsis thaliana 0.32 Serine protease inhibitor, potato inhibitor I-type family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT3G50022.1 Arabidopsis thaliana 0.88 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT3G50030.1 Arabidopsis thaliana 0.41 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT3G50060.1 Arabidopsis thaliana 0.67 myb domain protein 77 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G50110.1 Arabidopsis thaliana 0.46 PTEN 3 SRR364677:GFP sample AT3G50130.1 Arabidopsis thaliana 0.36 Plant protein of unknown function (DUF247) SRR364677:GFP sample AT3G50200.1 Arabidopsis thaliana 0.46 Plant protein of unknown function (DUF247) SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR1144843:WS 7 days on CIM AT3G50220.1 Arabidopsis thaliana 0.40 Protein of unknown function (DUF579) SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G50240.1 Arabidopsis thaliana 0.39 ATP binding microtubule motor family protein SRR1144843:WS 7 days on CIM AT3G50250.1 Arabidopsis thaliana 0.92 Unknown SRR1046871:GSM1287136: Arabidopsis thaliana Oy-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G50310.1 Arabidopsis thaliana 0.53 mitogen-activated protein kinase kinase kinase 20 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G50390.1 Arabidopsis thaliana 0.68 Transducin/WD40 repeat-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G50500.2 Arabidopsis thaliana 0.54 SNF1-related protein kinase 2.2 SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G50560.1 Arabidopsis thaliana 0.32 NAD(P)-binding Rossmann-fold superfamily protein SRR1019438:GSM1252264: Col-0 + BR RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019439:GSM1252265: Col-0 + BR RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT3G50640.1 Arabidopsis thaliana 0.43 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G50674.1 Arabidopsis thaliana 0.71 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas AT3G50682.1 Arabidopsis thaliana 0.90 Unknown SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT3G50695.1 Arabidopsis thaliana 0.83 Unknown SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT3G50710.1 Arabidopsis thaliana 0.48 F-box/RNI-like/FBD-like domains-containing protein SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT3G50740.1 Arabidopsis thaliana 0.33 UDP-glucosyl transferase 72E1 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT3G50764.1 Arabidopsis thaliana 0.57 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G50800.1 Arabidopsis thaliana 0.60 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G50808.1 Arabidopsis thaliana 0.80 PLATZ transcription factor family protein SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G50825.1 Arabidopsis thaliana 0.44 snoRNA SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G50850.1 Arabidopsis thaliana 0.54 Putative methyltransferase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G50870.1 Arabidopsis thaliana 0.35 GATA type zinc finger transcription factor family protein SRR1144843:WS 7 days on CIM AT3G50910.1 Arabidopsis thaliana 0.38 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G50920.1 Arabidopsis thaliana 0.32 Phosphatidic acid phosphatase (PAP2) family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G50925.1 Arabidopsis thaliana 0.58 Defensin-like (DEFL) family protein SRR1046877:GSM1287142: Arabidopsis thaliana Rsch-4 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G50930.1 Arabidopsis thaliana 0.69 cytochrome BC1 synthesis SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G50940.1 Arabidopsis thaliana 0.41 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G50990.1 Arabidopsis thaliana 0.31 Peroxidase superfamily protein SRR1058111:GSM1297913: at-seed-ler_wt_x_col_wt 2; Arabidopsis thaliana; RNA-Seq AT3G51040.1 Arabidopsis thaliana 0.40 RTE1-homolog SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G51070.1 Arabidopsis thaliana 0.46 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G51150.2 Arabidopsis thaliana 0.49 ATP binding microtubule motor family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G51210.1 Arabidopsis thaliana 0.60 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT3G51300.1 Arabidopsis thaliana 0.79 RHO-related protein from plants 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G51375.1 Arabidopsis thaliana 0.57 MIR171A; miRNA SRR978408:18O at 0mm 1hr AT3G51460.1 Arabidopsis thaliana 0.51 Phosphoinositide phosphatase family protein SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G51470.1 Arabidopsis thaliana 0.37 Protein phosphatase 2C family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G51540.1 Arabidopsis thaliana 0.75 Unknown SRR364677:GFP sample AT3G51640.1 Arabidopsis thaliana 0.35 Unknown SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G51644.1 Arabidopsis thaliana 0.38 Unknown ERR588044:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588046:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G51680.1 Arabidopsis thaliana 0.47 NAD(P)-binding Rossmann-fold superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT3G51730.1 Arabidopsis thaliana 0.36 saposin B domain-containing protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT3G51750.3 Arabidopsis thaliana 0.48 Unknown SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G51760.2 Arabidopsis thaliana 0.71 Protein of unknown function (DUF688) SRR826412:Sample Control BR5 AT3G51770.2 Arabidopsis thaliana 0.42 tetratricopeptide repeat (TPR)-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G51830.2 Arabidopsis thaliana 0.37 SAC domain-containing protein 8 SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT3G51910.1 Arabidopsis thaliana 0.58 heat shock transcription factor A7A SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT3G51915.1 Arabidopsis thaliana 0.80 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT3G51970.1 Arabidopsis thaliana 0.37 acyl-CoA sterol acyl transferase 1 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G52000.1 Arabidopsis thaliana 0.84 serine carboxypeptidase-like 36 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G52010.1 Arabidopsis thaliana 0.93 serine carboxypeptidase-like 37 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G52055.1 Arabidopsis thaliana 0.51 Unknown SRR364677:GFP sample AT3G52060.1 Arabidopsis thaliana 0.36 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT3G52080.1 Arabidopsis thaliana 0.47 cation/hydrogen exchanger 28 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G52115.1 Arabidopsis thaliana 0.76 gamma response gene 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G52120.2 Arabidopsis thaliana 0.33 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G52140.3 Arabidopsis thaliana 0.42 tetratricopeptide repeat (TPR)-containing protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G52230.1 Arabidopsis thaliana 0.39 Unknown SRR1019222:GSM1252087: edm2-4 RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G52290.1 Arabidopsis thaliana 0.46 IQ-domain 3 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT3G52300.2 Arabidopsis thaliana 0.34 ATP synthase D chain, mitochondrial SRR392123:GSM852813: mRNA-seq in C24, technical replicate 2; Arabidopsis thaliana; RNA-Seq AT3G52302.1 Arabidopsis thaliana 0.35 Unknown SRR1046935:GSM1287193: Wil-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G52310.1 Arabidopsis thaliana 0.77 ABC-2 type transporter family protein SRR826412:Sample Control BR5 AT3G52345.1 Arabidopsis thaliana 0.35 pre-tRNA SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G52400.1 Arabidopsis thaliana 0.38 syntaxin of plants 122 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G52430.1 Arabidopsis thaliana 0.34 alpha/beta-Hydrolases superfamily protein SRR446035:Avr.6h.A AT3G52450.1 Arabidopsis thaliana 0.34 plant U-box 22 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G52460.1 Arabidopsis thaliana 0.91 hydroxyproline-rich glycoprotein family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G52535.2 Arabidopsis thaliana 0.40 other RNA SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G52560.3 Arabidopsis thaliana 0.58 ubiquitin E2 variant 1D-4 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G52560.4 Arabidopsis thaliana 0.44 ubiquitin E2 variant 1D-4 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G52600.1 Arabidopsis thaliana 0.83 cell wall invertase 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G52610.1 Arabidopsis thaliana 0.35 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G52630.1 Arabidopsis thaliana 0.57 Nucleic acid-binding, OB-fold-like protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G52630.2 Arabidopsis thaliana 0.50 Nucleic acid-binding, OB-fold-like protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G52720.1 Arabidopsis thaliana 0.42 alpha carbonic anhydrase 1 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT3G52820.1 Arabidopsis thaliana 0.54 purple acid phosphatase 22 SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT3G52870.1 Arabidopsis thaliana 0.33 IQ calmodulin-binding motif family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G52930.1 Arabidopsis thaliana 0.46 Aldolase superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G52950.1 Arabidopsis thaliana 0.59 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G53000.1 Arabidopsis thaliana 0.36 phloem protein 2-A15 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G53016.1 Arabidopsis thaliana 0.93 MIR851a; miRNA SRR1106559:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 AT3G53040.1 Arabidopsis thaliana 0.45 late embryogenesis abundant protein, putative / LEA protein, putative SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq SRR1105596:GSM1303969: CL37_11-12_B; Arabidopsis thaliana; RNA-Seq AT3G53070.1 Arabidopsis thaliana 0.50 Putative membrane lipoprotein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G53090.2 Arabidopsis thaliana 0.44 ubiquitin-protein ligase 7 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G53140.1 Arabidopsis thaliana 0.33 O-methyltransferase family protein DRR008476: DRR008478:Arabidopsis ibm2-2 mRNA_seq AT3G53170.1 Arabidopsis thaliana 0.41 Tetratricopeptide repeat (TPR)-like superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G53210.1 Arabidopsis thaliana 0.66 nodulin MtN21 /EamA-like transporter family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G53230.1 Arabidopsis thaliana 0.69 ATPase, AAA-type, CDC48 protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G53232.1 Arabidopsis thaliana 0.44 ROTUNDIFOLIA like 1 SRR1257403:GSM1371365: infected Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq SRR1257404:GSM1371366: infected Col0 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G53280.1 Arabidopsis thaliana 0.34 cytochrome p450 71b5 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT3G53290.1 Arabidopsis thaliana 0.31 cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene SRR1046853:GSM1287118: Arabidopsis thaliana Edi-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G53294.1 Arabidopsis thaliana 0.59 Unknown SRR1257402:GSM1371364: mock Col0 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G53300.1 Arabidopsis thaliana 0.37 cytochrome P450, family 71, subfamily B, polypeptide 31 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G53305.1 Arabidopsis thaliana 0.87 cytochrome P450, family 71, subfamily B, polypeptide 32 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G53310.1 Arabidopsis thaliana 0.34 AP2/B3-like transcriptional factor family protein SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT3G53340.1 Arabidopsis thaliana 0.31 nuclear factor Y, subunit B10 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G53365.1 Arabidopsis thaliana 0.41 Unknown SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G53403.1 Arabidopsis thaliana 0.30 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample AT3G53450.1 Arabidopsis thaliana 0.40 Putative lysine decarboxylase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G53460.2 Arabidopsis thaliana 0.40 chloroplast RNA-binding protein 29 SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G53490.1 Arabidopsis thaliana 0.32 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G53500.1 Arabidopsis thaliana 0.34 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G53530.2 Arabidopsis thaliana 0.33 Chloroplast-targeted copper chaperone protein SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT3G53600.1 Arabidopsis thaliana 0.48 C2H2-type zinc finger family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G53610.3 Arabidopsis thaliana 0.63 RAB GTPase homolog 8 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G53630.1 Arabidopsis thaliana 0.43 Unknown SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G53640.1 Arabidopsis thaliana 0.45 Protein kinase superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G53650.1 Arabidopsis thaliana 0.33 Histone superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G53720.1 Arabidopsis thaliana 0.63 cation/H+ exchanger 20 SRR826412:Sample Control BR5 AT3G53770.1 Arabidopsis thaliana 0.30 late embryogenesis abundant 3 (LEA3) family protein SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G53780.1 Arabidopsis thaliana 0.34 RHOMBOID-like protein 4 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G53790.1 Arabidopsis thaliana 0.91 TRF-like 4 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT3G53810.1 Arabidopsis thaliana 0.33 Concanavalin A-like lectin protein kinase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G53820.1 Arabidopsis thaliana 0.77 C2H2 and C2HC zinc fingers superfamily protein SRR364677:GFP sample AT3G53880.1 Arabidopsis thaliana 0.44 NAD(P)-linked oxidoreductase superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G53910.1 Arabidopsis thaliana 0.34 malate dehydrogenase-related SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT3G53930.2 Arabidopsis thaliana 0.38 Protein kinase superfamily protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 AT3G53990.2 Arabidopsis thaliana 0.37 Adenine nucleotide alpha hydrolases-like superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G54000.1 Arabidopsis thaliana 0.46 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G54030.1 Arabidopsis thaliana 0.41 Protein kinase protein with tetratricopeptide repeat domain ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G54070.1 Arabidopsis thaliana 0.30 Ankyrin repeat family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT3G54085.2 Arabidopsis thaliana 0.69 Yos1-like protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G54130.1 Arabidopsis thaliana 0.40 Josephin family protein SRR364677:GFP sample AT3G54240.1 Arabidopsis thaliana 0.90 alpha/beta-Hydrolases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G54270.1 Arabidopsis thaliana 0.32 sucrose-6F-phosphate phosphohydrolase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G54280.2 Arabidopsis thaliana 0.61 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G54363.1 Arabidopsis thaliana 0.59 Unknown SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G54380.1 Arabidopsis thaliana 0.33 SAC3/GANP/Nin1/mts3/eIF-3 p25 family SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G54440.2 Arabidopsis thaliana 0.79 glycoside hydrolase family 2 protein SRR392120:GSM852810: mRNA-seq in Ler, technical replicate 3; Arabidopsis thaliana; RNA-Seq AT3G54440.3 Arabidopsis thaliana 0.51 glycoside hydrolase family 2 protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G54460.1 Arabidopsis thaliana 0.34 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G54480.1 Arabidopsis thaliana 0.44 SKP1/ASK-interacting protein 5 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G54530.1 Arabidopsis thaliana 0.76 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G54530.2 Arabidopsis thaliana 0.53 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G54580.1 Arabidopsis thaliana 0.43 Proline-rich extensin-like family protein SRR364677:GFP sample AT3G54600.1 Arabidopsis thaliana 0.36 Class I glutamine amidotransferase-like superfamily protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT3G54640.1 Arabidopsis thaliana 0.50 tryptophan synthase alpha chain SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G54690.1 Arabidopsis thaliana 0.35 Sugar isomerase (SIS) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G54720.1 Arabidopsis thaliana 0.31 Peptidase M28 family protein SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT3G54740.1 Arabidopsis thaliana 0.61 Protein of unknown function, DUF593 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G54740.2 Arabidopsis thaliana 0.77 Protein of unknown function, DUF593 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G54770.1 Arabidopsis thaliana 0.43 RNA-binding (RRM/RBD/RNP motifs) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G54780.3 Arabidopsis thaliana 0.35 Zinc finger (C3HC4-type RING finger) family protein SRR1144843:WS 7 days on CIM AT3G54800.1 Arabidopsis thaliana 0.74 Pleckstrin homology (PH) and lipid-binding START domains-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G54800.2 Arabidopsis thaliana 0.95 Pleckstrin homology (PH) and lipid-binding START domains-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G54804.1 Arabidopsis thaliana 0.37 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas AT3G54823.1 Arabidopsis thaliana 0.36 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT3G54826.1 Arabidopsis thaliana 0.34 Zim17-type zinc finger protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G54840.2 Arabidopsis thaliana 0.49 Ras-related small GTP-binding family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G54870.1 Arabidopsis thaliana 0.86 Armadillo/beta-catenin repeat family protein / kinesin motor family protein SRR364677:GFP sample AT3G54890.3 Arabidopsis thaliana 0.52 photosystem I light harvesting complex gene 1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G54960.2 Arabidopsis thaliana 0.36 PDI-like 1-3 SRR1260032:P+_WT _R1 AT3G55030.1 Arabidopsis thaliana 0.40 phosphatidylglycerolphosphate synthase 2 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G55040.1 Arabidopsis thaliana 0.51 glutathione transferase lambda 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G55070.2 Arabidopsis thaliana 0.37 LisH/CRA/RING-U-box domains-containing protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G55080.1 Arabidopsis thaliana 0.34 SET domain-containing protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G55080.2 Arabidopsis thaliana 0.45 SET domain-containing protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G55090.1 Arabidopsis thaliana 0.35 ABC-2 type transporter family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT3G55140.1 Arabidopsis thaliana 0.46 Pectin lyase-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G55150.1 Arabidopsis thaliana 0.42 exocyst subunit exo70 family protein H1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G55180.1 Arabidopsis thaliana 0.58 alpha/beta-Hydrolases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G55190.1 Arabidopsis thaliana 0.45 alpha/beta-Hydrolases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G55310.1 Arabidopsis thaliana 0.50 NAD(P)-binding Rossmann-fold superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G55400.2 Arabidopsis thaliana 0.39 methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G55430.1 Arabidopsis thaliana 0.38 O-Glycosyl hydrolases family 17 protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G55450.1 Arabidopsis thaliana 0.42 PBS1-like 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT3G55450.2 Arabidopsis thaliana 0.37 PBS1-like 1 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G55480.1 Arabidopsis thaliana 0.34 protein affected trafficking 2 SRR1652317:atrtf2-2Ho AT3G55485.1 Arabidopsis thaliana 0.36 Unknown SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT3G55512.1 Arabidopsis thaliana 0.79 MIR172D; miRNA SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT3G55573.1 Arabidopsis thaliana 0.80 Unknown SRR800753:GSM1111913: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G55590.1 Arabidopsis thaliana 0.74 Glucose-1-phosphate adenylyltransferase family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G55605.1 Arabidopsis thaliana 0.48 Mitochondrial glycoprotein family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G55610.2 Arabidopsis thaliana 0.31 delta 1-pyrroline-5-carboxylate synthase 2 SRR515160:Untreated ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515175:Untreated ddc mRNA-Seq, run 1, Bioreplicate 1 AT3G55620.1 Arabidopsis thaliana 0.36 Translation initiation factor IF6 SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT3G55630.1 Arabidopsis thaliana 0.41 DHFS-FPGS homolog D SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT3G55630.2 Arabidopsis thaliana 0.59 DHFS-FPGS homolog D SRR949991:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) AT3G55646.1 Arabidopsis thaliana 0.40 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G55690.1 Arabidopsis thaliana 0.31 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G55720.1 Arabidopsis thaliana 0.30 Protein of unknown function (DUF620) SRR364677:GFP sample AT3G55730.1 Arabidopsis thaliana 0.33 myb domain protein 109 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT3G55734.1 Arabidopsis thaliana 0.71 MIR393B; miRNA SRR364678:nonGFP sample AT3G55735.1 Arabidopsis thaliana 1.00 pre-tRNA SRR499987:sig6 replicate 1 AT3G55760.1 Arabidopsis thaliana 0.45 Unknown SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT3G55770.6 Arabidopsis thaliana 0.32 GATA type zinc finger transcription factor family protein SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G55790.1 Arabidopsis thaliana 0.32 Unknown SRR926200:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 0uM MeJA treatment in Columbia wild-type bio rep 3 SRR926205:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 0uM MeJA treatment in jaz2-1 bio rep 1 AT3G55820.1 Arabidopsis thaliana 0.35 Fasciclin-like arabinogalactan family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G55850.2 Arabidopsis thaliana 0.52 Amidohydrolase family SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G55860.1 Arabidopsis thaliana 0.76 Unknown SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G55880.1 Arabidopsis thaliana 0.34 Alpha/beta hydrolase related protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT3G55890.1 Arabidopsis thaliana 0.39 Yippee family putative zinc-binding protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT3G55900.1 Arabidopsis thaliana 0.43 F-box family protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT3G55910.1 Arabidopsis thaliana 0.53 Unknown SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G55950.1 Arabidopsis thaliana 0.37 CRINKLY4 related 3 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G55980.1 Arabidopsis thaliana 0.65 salt-inducible zinc finger 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G55990.1 Arabidopsis thaliana 0.30 Plant protein of unknown function (DUF828) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G56000.1 Arabidopsis thaliana 0.46 cellulose synthase like A14 SRR364677:GFP sample AT3G56020.1 Arabidopsis thaliana 0.37 Ribosomal protein L41 family SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT3G56180.1 Arabidopsis thaliana 0.93 Protein of unknown function (DUF567) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G56190.2 Arabidopsis thaliana 0.48 alpha-soluble NSF attachment protein 2 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G56240.1 Arabidopsis thaliana 0.58 copper chaperone ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT3G56260.1 Arabidopsis thaliana 0.62 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G56260.2 Arabidopsis thaliana 0.35 Unknown SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT3G56380.1 Arabidopsis thaliana 0.66 response regulator 17 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G56400.1 Arabidopsis thaliana 0.34 WRKY DNA-binding protein 70 SRR446035:Avr.6h.A AT3G56410.2 Arabidopsis thaliana 0.40 Protein of unknown function (DUF3133) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G56420.1 Arabidopsis thaliana 0.39 Thioredoxin superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G56590.2 Arabidopsis thaliana 0.44 hydroxyproline-rich glycoprotein family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G56600.1 Arabidopsis thaliana 0.63 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G56600.2 Arabidopsis thaliana 0.90 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G56705.1 Arabidopsis thaliana 0.51 U2.6; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G56740.1 Arabidopsis thaliana 0.38 Ubiquitin-associated (UBA) protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G56760.1 Arabidopsis thaliana 0.44 Protein kinase superfamily protein SRR364677:GFP sample AT3G56770.1 Arabidopsis thaliana 0.55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1144842:be1-3 7 days on CIM AT3G56790.1 Arabidopsis thaliana 0.60 RNA splicing factor-related ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G56825.1 Arabidopsis thaliana 0.71 U2.4; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G56830.2 Arabidopsis thaliana 0.33 Protein of unknown function (DUF565) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G56840.1 Arabidopsis thaliana 0.52 FAD-dependent oxidoreductase family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT3G56860.2 Arabidopsis thaliana 0.46 UBP1-associated protein 2A SRR944368:GSM1197430: Salt-3h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT3G56870.1 Arabidopsis thaliana 0.46 Unknown ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G56890.1 Arabidopsis thaliana 0.30 F-box associated ubiquitination effector family protein ERR229858:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G56891.1 Arabidopsis thaliana 0.56 Heavy metal transport/detoxification superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G56920.1 Arabidopsis thaliana 0.83 DHHC-type zinc finger family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G56930.1 Arabidopsis thaliana 0.39 DHHC-type zinc finger family protein SRR364677:GFP sample AT3G56960.1 Arabidopsis thaliana 0.33 phosphatidyl inositol monophosphate 5 kinase 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G56970.1 Arabidopsis thaliana 0.61 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1652315:prp8-7 AT3G56980.1 Arabidopsis thaliana 0.44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1652315:prp8-7 AT3G57020.2 Arabidopsis thaliana 0.67 Calcium-dependent phosphotriesterase superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G57070.1 Arabidopsis thaliana 0.31 Glutaredoxin family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G57072.1 Arabidopsis thaliana 0.63 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G57140.1 Arabidopsis thaliana 0.74 sugar-dependent 1-like SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G57140.2 Arabidopsis thaliana 0.44 sugar-dependent 1-like SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G57250.1 Arabidopsis thaliana 0.70 Emsy N Terminus (ENT) domain-containing protein SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT3G57260.1 Arabidopsis thaliana 0.43 beta-1,3-glucanase 2 SRR514998:GSM736442: At_mRNASeq AT3G57320.2 Arabidopsis thaliana 0.62 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT3G57340.1 Arabidopsis thaliana 0.36 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G57360.1 Arabidopsis thaliana 0.51 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G57390.1 Arabidopsis thaliana 0.62 AGAMOUS-like 18 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G57480.1 Arabidopsis thaliana 0.60 zinc finger (C2H2 type, AN1-like) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G57510.1 Arabidopsis thaliana 0.71 Pectin lyase-like superfamily protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G57520.1 Arabidopsis thaliana 0.43 seed imbibition 2 SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq AT3G57520.3 Arabidopsis thaliana 0.33 seed imbibition 2 SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT3G57530.1 Arabidopsis thaliana 0.52 calcium-dependent protein kinase 32 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G57550.2 Arabidopsis thaliana 0.42 guanylate kinase SRR627675:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq AT3G57570.1 Arabidopsis thaliana 0.34 ARM repeat superfamily protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G57600.1 Arabidopsis thaliana 0.65 Integrase-type DNA-binding superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G57630.2 Arabidopsis thaliana 0.50 exostosin family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G57680.1 Arabidopsis thaliana 0.34 Peptidase S41 family protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq AT3G57690.1 Arabidopsis thaliana 0.90 arabinogalactan protein 23 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G57740.1 Arabidopsis thaliana 0.46 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G57760.2 Arabidopsis thaliana 0.33 Protein kinase superfamily protein SRR364677:GFP sample AT3G57765.1 Arabidopsis thaliana 0.82 U2.3; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G57800.2 Arabidopsis thaliana 0.32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR501597:GSM938343: WT_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq AT3G57810.2 Arabidopsis thaliana 0.40 Cysteine proteinases superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G57840.1 Arabidopsis thaliana 0.43 Plant self-incompatibility protein S1 family SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq AT3G57920.1 Arabidopsis thaliana 0.59 squamosa promoter binding protein-like 15 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G57930.2 Arabidopsis thaliana 0.30 Unknown SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm SRR068971:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068972:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068973:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068974:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm SRR068987:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068988:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068989:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068990:GSM607735: Ler-WTxCol-WT_full-Endosperm AT3G57950.1 Arabidopsis thaliana 0.30 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq SRR1144845:be1-3 2 days on SIM AT3G58020.1 Arabidopsis thaliana 0.74 Chaperone DnaJ-domain superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G58040.1 Arabidopsis thaliana 0.36 seven in absentia of Arabidopsis 2 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G58060.1 Arabidopsis thaliana 0.36 Cation efflux family protein SRR1652317:atrtf2-2Ho SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT3G58070.1 Arabidopsis thaliana 0.35 C2H2 and C2HC zinc fingers superfamily protein SRR1019222:GSM1252087: edm2-4 RNA-seq; Arabidopsis thaliana; RNA-Seq AT3G58080.1 Arabidopsis thaliana 0.83 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G58130.2 Arabidopsis thaliana 0.33 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G58150.1 Arabidopsis thaliana 0.37 Optic atrophy 3 protein (OPA3) SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT3G58180.1 Arabidopsis thaliana 0.47 ARM repeat superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G58190.1 Arabidopsis thaliana 0.44 lateral organ boundaries-domain 29 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT3G58193.1 Arabidopsis thaliana 0.69 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G58196.1 Arabidopsis thaliana 0.68 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G58240.1 Arabidopsis thaliana 0.35 TRAF-like superfamily protein SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G58430.1 Arabidopsis thaliana 0.35 TRAF-like family protein SRR1046858:GSM1287123: Arabidopsis thaliana Hi-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046870:GSM1287135: Arabidopsis thaliana No-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046897:GSM1287162: Arabidopsis thaliana Zu-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1144843:WS 7 days on CIM AT3G58480.1 Arabidopsis thaliana 0.49 calmodulin-binding family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G58490.1 Arabidopsis thaliana 0.81 Phosphatidic acid phosphatase (PAP2) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G58540.1 Arabidopsis thaliana 0.43 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G58620.1 Arabidopsis thaliana 0.40 tetratricopetide-repeat thioredoxin-like 4 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR446032:Vir.1h.B AT3G58676.1 Arabidopsis thaliana 0.54 Unknown SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G58720.1 Arabidopsis thaliana 0.55 RING/U-box superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G58750.1 Arabidopsis thaliana 0.47 citrate synthase 2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G58780.3 Arabidopsis thaliana 0.41 K-box region and MADS-box transcription factor family protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G58790.1 Arabidopsis thaliana 0.43 galacturonosyltransferase 15 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G58840.1 Arabidopsis thaliana 0.32 Tropomyosin-related SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G58900.1 Arabidopsis thaliana 0.30 F-box/RNI-like superfamily protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT3G58900.4 Arabidopsis thaliana 0.37 F-box/RNI-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G58990.1 Arabidopsis thaliana 0.33 isopropylmalate isomerase 1 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing AT3G59000.2 Arabidopsis thaliana 0.53 F-box/RNI-like superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT3G59030.1 Arabidopsis thaliana 0.38 MATE efflux family protein SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT3G59050.1 Arabidopsis thaliana 0.37 polyamine oxidase 3 SRR364677:GFP sample AT3G59060.1 Arabidopsis thaliana 0.46 phytochrome interacting factor 3-like 6 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT3G59068.1 Arabidopsis thaliana 0.73 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT3G59080.1 Arabidopsis thaliana 0.51 Eukaryotic aspartyl protease family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G59120.1 Arabidopsis thaliana 0.51 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G59130.1 Arabidopsis thaliana 0.83 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G59150.1 Arabidopsis thaliana 0.54 F-box/RNI-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G59210.2 Arabidopsis thaliana 0.31 F-box/RNI-like superfamily protein SRR364678:nonGFP sample AT3G59270.1 Arabidopsis thaliana 0.41 FBD-like domain family protein ERR351331:arabidopsis_thaliana_floral_meristem_atlas AT3G59290.1 Arabidopsis thaliana 0.90 ENTH/VHS family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G59300.1 Arabidopsis thaliana 0.38 Pentatricopeptide repeat (PPR) superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G59310.1 Arabidopsis thaliana 0.70 Eukaryotic protein of unknown function (DUF914) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G59350.2 Arabidopsis thaliana 0.41 Protein kinase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G59360.1 Arabidopsis thaliana 0.39 UDP-galactose transporter 6 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G59415.1 Arabidopsis thaliana 0.41 pre-tRNA SRR527165:Col-0 control replicate 2 SRR515317:GSM951349: RVE8:GR_DEX_1; Arabidopsis thaliana; RNA-Seq AT3G59450.1 Arabidopsis thaliana 0.37 Calcium-binding EF-hand family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G59455.1 Arabidopsis thaliana 0.40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G59470.2 Arabidopsis thaliana 0.31 Far-red impaired responsive (FAR1) family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G59480.1 Arabidopsis thaliana 0.32 pfkB-like carbohydrate kinase family protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G59500.1 Arabidopsis thaliana 0.49 Integral membrane HRF1 family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G59520.1 Arabidopsis thaliana 0.51 RHOMBOID-like protein 13 SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT3G59590.1 Arabidopsis thaliana 0.59 jacalin lectin family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G59620.1 Arabidopsis thaliana 0.34 Mannose-binding lectin superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G59650.2 Arabidopsis thaliana 0.64 mitochondrial ribosomal protein L51/S25/CI-B8 family protein SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 AT3G59820.1 Arabidopsis thaliana 0.43 LETM1-like protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G59830.1 Arabidopsis thaliana 0.75 Integrin-linked protein kinase family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G59850.1 Arabidopsis thaliana 0.42 Pectin lyase-like superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G59890.2 Arabidopsis thaliana 0.32 Dihydrodipicolinate reductase, bacterial/plant SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT3G59910.1 Arabidopsis thaliana 0.40 Ankyrin repeat family protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G59950.2 Arabidopsis thaliana 0.30 Peptidase family C54 protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G59950.3 Arabidopsis thaliana 0.34 Peptidase family C54 protein SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G59960.1 Arabidopsis thaliana 0.40 histone-lysine N-methyltransferase ASHH4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G59970.2 Arabidopsis thaliana 0.38 methylenetetrahydrofolate reductase 1 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G60000.1 Arabidopsis thaliana 0.79 Family of unknown function (DUF566) SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G60020.1 Arabidopsis thaliana 0.39 SKP1-like 5 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G60040.1 Arabidopsis thaliana 0.77 F-box family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G60075.1 Arabidopsis thaliana 0.34 pre-tRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR527164:Col-0 control replicate 1 SRR527165:Col-0 control replicate 2 SRR527175:nrpe1 replicate2 SRR527166:Col-0 on geldanamycin replicate1 SRR527167:Col-0 on geldanamycin replicate2 SRR1004791:tanorexia-1 Transcriptome Profiling E2 High-Light 30 minutes Replicate A AT3G60120.1 Arabidopsis thaliana 0.53 beta glucosidase 27 SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT3G60130.1 Arabidopsis thaliana 0.31 beta glucosidase 16 SRR364677:GFP sample AT3G60130.2 Arabidopsis thaliana 0.57 beta glucosidase 16 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT3G60140.1 Arabidopsis thaliana 0.32 Glycosyl hydrolase superfamily protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT3G60200.1 Arabidopsis thaliana 0.40 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G60220.1 Arabidopsis thaliana 0.59 TOXICOS EN LEVADURA 4 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G60260.4 Arabidopsis thaliana 0.79 ELMO/CED-12 family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G60286.1 Arabidopsis thaliana 0.74 Unknown SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT3G60328.1 Arabidopsis thaliana 0.78 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT3G60330.2 Arabidopsis thaliana 0.77 H(+)-ATPase 7 SRR364677:GFP sample AT3G60350.1 Arabidopsis thaliana 0.65 ARABIDILLO-2 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G60420.1 Arabidopsis thaliana 0.58 Phosphoglycerate mutase family protein SRR446035:Avr.6h.A AT3G60440.1 Arabidopsis thaliana 0.32 Phosphoglycerate mutase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G60450.1 Arabidopsis thaliana 0.43 Phosphoglycerate mutase family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G60490.1 Arabidopsis thaliana 0.31 Integrase-type DNA-binding superfamily protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT3G60550.1 Arabidopsis thaliana 0.50 cyclin p3;2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G60570.1 Arabidopsis thaliana 0.75 expansin B5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G60590.1 Arabidopsis thaliana 0.36 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G60647.1 Arabidopsis thaliana 0.33 Unknown SRR1144843:WS 7 days on CIM AT3G60650.1 Arabidopsis thaliana 0.36 Unknown SRR1144843:WS 7 days on CIM AT3G60670.1 Arabidopsis thaliana 0.34 PLATZ transcription factor family protein SRR1144843:WS 7 days on CIM AT3G60700.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF1163) SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G60730.1 Arabidopsis thaliana 0.32 Plant invertase/pectin methylesterase inhibitor superfamily ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G60780.1 Arabidopsis thaliana 0.43 Protein of unknown function (DUF1442) SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT3G60810.2 Arabidopsis thaliana 0.36 Unknown SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT3G60820.3 Arabidopsis thaliana 0.31 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G60830.1 Arabidopsis thaliana 0.35 actin-related protein 7 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G60890.2 Arabidopsis thaliana 0.36 protein binding SRR1257391:GSM1371353: infected Col0 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G60897.1 Arabidopsis thaliana 0.40 Unknown SRR068965:GSM607726: Col-WTxLer-WT_Embryo AT3G60900.1 Arabidopsis thaliana 0.31 FASCICLIN-like arabinogalactan-protein 10 SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT3G60930.1 Arabidopsis thaliana 0.61 transposable element gene SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A AT3G60940.1 Arabidopsis thaliana 0.42 Putative endonuclease or glycosyl hydrolase SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G61010.1 Arabidopsis thaliana 0.40 Ferritin/ribonucleotide reductase-like family protein SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT3G61030.1 Arabidopsis thaliana 0.31 Calcium-dependent lipid-binding (CaLB domain) family protein SRR1046868:GSM1287133: Arabidopsis thaliana No-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G61035.1 Arabidopsis thaliana 0.55 Cytochrome P450 superfamily protein SRR1207199:GSM1359151: 35S:NGA 1; Arabidopsis thaliana; RNA-Seq AT3G61111.1 Arabidopsis thaliana 0.43 Zinc-binding ribosomal protein family protein SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G61118.1 Arabidopsis thaliana 0.31 other RNA SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G61160.1 Arabidopsis thaliana 0.86 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G61160.2 Arabidopsis thaliana 0.82 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G61170.1 Arabidopsis thaliana 0.84 Tetratricopeptide repeat (TPR)-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G61175.1 Arabidopsis thaliana 0.31 low-molecular-weight cysteine-rich 52 SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G61177.1 Arabidopsis thaliana 0.33 low-molecular-weight cysteine-rich 53 SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G61182.1 Arabidopsis thaliana 0.75 low-molecular-weight cysteine-rich 54 SRR1257403:GSM1371365: infected Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G61190.1 Arabidopsis thaliana 0.41 BON association protein 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G61230.1 Arabidopsis thaliana 0.45 GATA type zinc finger transcription factor family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G61320.1 Arabidopsis thaliana 0.41 Bestrophin-like protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT3G61389.1 Arabidopsis thaliana 0.64 Unknown SRR1046922:GSM1287180: Mt-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT3G61400.1 Arabidopsis thaliana 0.37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR926201:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 1 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 SRR926209:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 1 SRR926211:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 2 SRR926212:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 3 SRR926216:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 1 SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT3G61460.1 Arabidopsis thaliana 0.31 brassinosteroid-responsive RING-H2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT3G61480.1 Arabidopsis thaliana 0.32 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G61490.1 Arabidopsis thaliana 0.42 Pectin lyase-like superfamily protein SRR1548688:GSM1477533: lsm4 rep 1,1; Arabidopsis thaliana; RNA-Seq SRR1548689:GSM1477534: lsm4 rep 1,2; Arabidopsis thaliana; RNA-Seq SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq SRR1548692:GSM1477537: lsm4 rep 3,1; Arabidopsis thaliana; RNA-Seq SRR1548693:GSM1477538: lsm4 rep 3,2; Arabidopsis thaliana; RNA-Seq AT3G61490.2 Arabidopsis thaliana 0.36 Pectin lyase-like superfamily protein SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT3G61500.1 Arabidopsis thaliana 0.31 Unknown SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G61540.1 Arabidopsis thaliana 0.35 alpha/beta-Hydrolases superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G61560.1 Arabidopsis thaliana 0.65 Reticulon family protein SRR364677:GFP sample AT3G61580.1 Arabidopsis thaliana 0.31 Fatty acid/sphingolipid desaturase SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G61630.1 Arabidopsis thaliana 0.34 cytokinin response factor 6 SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT3G61640.1 Arabidopsis thaliana 0.45 arabinogalactan protein 20 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G61760.1 Arabidopsis thaliana 0.50 DYNAMIN-like 1B SRR364677:GFP sample AT3G61800.1 Arabidopsis thaliana 0.31 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample SRR364678:nonGFP sample AT3G61810.1 Arabidopsis thaliana 0.47 Glycosyl hydrolase family 17 protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G61825.1 Arabidopsis thaliana 0.57 pre-tRNA SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR499987:sig6 replicate 1 SRR499988:gun1/sig6 replicate 1 SRR499989:gun1/sig6 replicate 2 AT3G61826.1 Arabidopsis thaliana 0.34 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR307069:GSM756822: Col x Ler endosperm RNA-seq AT3G61827.1 Arabidopsis thaliana 0.50 Unknown SRR944368:GSM1197430: Salt-3h_nonpolyA; Arabidopsis thaliana; RNA-Seq SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A AT3G61829.1 Arabidopsis thaliana 0.45 Unknown SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G61850.1 Arabidopsis thaliana 0.34 Dof-type zinc finger DNA-binding family protein SRR1144845:be1-3 2 days on SIM AT3G61850.4 Arabidopsis thaliana 0.32 Dof-type zinc finger DNA-binding family protein SRR1144842:be1-3 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT3G61880.1 Arabidopsis thaliana 0.70 cytochrome p450 78a9 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G61880.2 Arabidopsis thaliana 0.69 cytochrome p450 78a9 SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT3G61897.1 Arabidopsis thaliana 0.46 MIR166/MIR166B; miRNA SRR978410:18O at 100mm 1hr AT3G61947.1 Arabidopsis thaliana 0.55 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT3G61950.1 Arabidopsis thaliana 0.33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT3G61962.1 Arabidopsis thaliana 0.39 Putative membrane lipoprotein ERR351332:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G62010.1 Arabidopsis thaliana 0.37 Unknown SRR364677:GFP sample AT3G62030.2 Arabidopsis thaliana 0.94 rotamase CYP 4 SRR345562:GSM798296: mRNASeq_WT_rep2 AT3G62097.1 Arabidopsis thaliana 0.72 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR1144843:WS 7 days on CIM AT3G62170.1 Arabidopsis thaliana 0.57 VANGUARD 1 homolog 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G62180.1 Arabidopsis thaliana 0.84 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G62230.1 Arabidopsis thaliana 0.82 F-box family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G62245.1 Arabidopsis thaliana 0.37 pre-tRNA SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq AT3G62260.2 Arabidopsis thaliana 0.31 Protein phosphatase 2C family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G62280.1 Arabidopsis thaliana 0.48 GDSL-like Lipase/Acylhydrolase superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G62290.1 Arabidopsis thaliana 0.56 ADP-ribosylation factor A1E SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT3G62336.1 Arabidopsis thaliana 0.47 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G62350.1 Arabidopsis thaliana 0.35 Unknown SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G62420.1 Arabidopsis thaliana 0.51 basic region/leucine zipper motif 53 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G62455.1 Arabidopsis thaliana 0.35 transposable element gene SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G62510.1 Arabidopsis thaliana 0.64 protein disulfide isomerase-related SRR1257401:GSM1371363: mock Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT3G62528.1 Arabidopsis thaliana 0.73 Unknown SRR364677:GFP sample AT3G62640.1 Arabidopsis thaliana 0.87 Protein of unknown function (DUF3511) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G62660.1 Arabidopsis thaliana 0.58 galacturonosyltransferase-like 7 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G62710.1 Arabidopsis thaliana 0.93 Glycosyl hydrolase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT3G62720.1 Arabidopsis thaliana 0.35 xylosyltransferase 1 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT3G62760.1 Arabidopsis thaliana 0.71 Glutathione S-transferase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT3G62770.1 Arabidopsis thaliana 0.45 Transducin/WD40 repeat-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT3G62770.3 Arabidopsis thaliana 0.40 Transducin/WD40 repeat-like superfamily protein SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT3G62820.1 Arabidopsis thaliana 0.42 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR826412:Sample Control BR5 AT3G62907.1 Arabidopsis thaliana 0.66 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G62920.1 Arabidopsis thaliana 0.51 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G62960.1 Arabidopsis thaliana 0.35 Thioredoxin superfamily protein ERR588043:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588048:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588046:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT3G62988.1 Arabidopsis thaliana 0.54 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT3G63006.1 Arabidopsis thaliana 1.00 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT3G63010.1 Arabidopsis thaliana 0.38 alpha/beta-Hydrolases superfamily protein SRR364677:GFP sample SRR364678:nonGFP sample AT3G63050.1 Arabidopsis thaliana 0.33 Unknown SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT3G63060.1 Arabidopsis thaliana 0.41 EID1-like 3 SRR907283:SAD1 dynamically regulates alternative splicing and stress tolerance SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT3G63088.1 Arabidopsis thaliana 0.39 ROTUNDIFOLIA like 14 SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT3G63233.1 Arabidopsis thaliana 0.50 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT3G63240.1 Arabidopsis thaliana 0.37 DNAse I-like superfamily protein SRR1144843:WS 7 days on CIM AT3G63260.2 Arabidopsis thaliana 0.53 Protein kinase superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G63290.1 Arabidopsis thaliana 0.40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G63300.2 Arabidopsis thaliana 0.36 FORKED 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G63310.1 Arabidopsis thaliana 0.56 Bax inhibitor-1 family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT3G63350.1 Arabidopsis thaliana 0.58 winged-helix DNA-binding transcription factor family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT3G63360.1 Arabidopsis thaliana 0.70 defensin-related SRR1144842:be1-3 7 days on CIM AT3G63375.1 Arabidopsis thaliana 0.32 MIR167B; miRNA SRR975489:S26 at 150mm 1hr SRR1105829:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 SRR1105830:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 AT3G63400.3 Arabidopsis thaliana 0.41 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT3G63420.1 Arabidopsis thaliana 0.47 Ggamma-subunit 1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT3G63445.1 Arabidopsis thaliana 0.30 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT3G63460.3 Arabidopsis thaliana 0.38 transducin family protein / WD-40 repeat family protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT3G63470.1 Arabidopsis thaliana 0.32 serine carboxypeptidase-like 40 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT3G63530.1 Arabidopsis thaliana 0.41 RING/U-box superfamily protein SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT3G66652.1 Arabidopsis thaliana 0.43 fip1 motif-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G66656.1 Arabidopsis thaliana 0.80 AGAMOUS-like 91 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT3G66658.1 Arabidopsis thaliana 0.45 aldehyde dehydrogenase 22A1 SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G00005.1 Arabidopsis thaliana 0.47 PRA1 (Prenylated rab acceptor) family protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G00040.1 Arabidopsis thaliana 0.38 Chalcone and stilbene synthase family protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT4G00080.1 Arabidopsis thaliana 0.33 Plant invertase/pectin methylesterase inhibitor superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G00110.1 Arabidopsis thaliana 0.72 UDP-D-glucuronate 4-epimerase 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G00120.1 Arabidopsis thaliana 0.45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1207201:GSM1359153: 35S:NGA 3; Arabidopsis thaliana; RNA-Seq AT4G00130.1 Arabidopsis thaliana 0.49 DNA-binding storekeeper protein-related transcriptional regulator SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT4G00160.1 Arabidopsis thaliana 0.58 F-box/RNI-like/FBD-like domains-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G00210.1 Arabidopsis thaliana 0.31 LOB domain-containing protein 31 ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT4G00260.1 Arabidopsis thaliana 0.35 Transcriptional factor B3 family protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G00280.1 Arabidopsis thaliana 0.47 Unknown SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G00300.1 Arabidopsis thaliana 0.47 fringe-related protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G00305.1 Arabidopsis thaliana 0.36 RING/U-box superfamily protein SRR364678:nonGFP sample AT4G00350.1 Arabidopsis thaliana 0.88 MATE efflux family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G00356.1 Arabidopsis thaliana 0.89 Unknown SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq AT4G00416.1 Arabidopsis thaliana 0.68 methyl-CPG-binding domain 3 SRR671949:GSM1077435: Root_polyA_KNO3_Treatment_rep2; Arabidopsis thaliana; RNA-Seq AT4G00420.2 Arabidopsis thaliana 0.45 Double-stranded RNA-binding domain (DsRBD)-containing protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G00430.1 Arabidopsis thaliana 0.46 plasma membrane intrinsic protein 1;4 SRR446043:Vir.12h.A SRR446044:Vir.12h.B AT4G00430.2 Arabidopsis thaliana 0.37 plasma membrane intrinsic protein 1;4 SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT4G00440.3 Arabidopsis thaliana 0.39 Protein of unknown function (DUF3741) SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT4G00460.2 Arabidopsis thaliana 0.75 RHO guanyl-nucleotide exchange factor 3 SRR364677:GFP sample AT4G00500.2 Arabidopsis thaliana 0.36 alpha/beta-Hydrolases superfamily protein SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT4G00560.1 Arabidopsis thaliana 0.44 NAD(P)-binding Rossmann-fold superfamily protein SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G00680.1 Arabidopsis thaliana 0.56 actin depolymerizing factor 8 SRR364677:GFP sample AT4G00755.2 Arabidopsis thaliana 0.36 F-box family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G00810.1 Arabidopsis thaliana 0.47 60S acidic ribosomal protein family SRR345562:GSM798296: mRNASeq_WT_rep2 SRR345564:GSM798298: mRNASeq_skip_rep2 AT4G00830.2 Arabidopsis thaliana 0.33 RNA-binding (RRM/RBD/RNP motifs) family protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT4G00870.1 Arabidopsis thaliana 0.31 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1207194:GSM1359146: WT 1; Arabidopsis thaliana; RNA-Seq SRR1207198:GSM1359150: nga 3; Arabidopsis thaliana; RNA-Seq AT4G00885.1 Arabidopsis thaliana 0.69 MIR165/MIR165B; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G00930.1 Arabidopsis thaliana 0.39 COP1-interacting protein 4.1 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G00950.1 Arabidopsis thaliana 0.50 Protein of unknown function (DUF688) SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT4G00975.1 Arabidopsis thaliana 0.32 other RNA SRR520239:GSM958259: WT-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520242:GSM958262: pif3-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520245:GSM958265: pif145-RNA-3; Arabidopsis thaliana; RNA-Seq SRR520248:GSM958268: pifq-RNA-3; Arabidopsis thaliana; RNA-Seq AT4G01010.1 Arabidopsis thaliana 0.32 cyclic nucleotide-gated channel 13 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT4G01040.1 Arabidopsis thaliana 0.46 Glycosyl hydrolase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G01110.1 Arabidopsis thaliana 0.62 Unknown SRR364677:GFP sample AT4G01130.1 Arabidopsis thaliana 0.38 GDSL-like Lipase/Acylhydrolase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G01140.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF1191) SRR1058111:GSM1297913: at-seed-ler_wt_x_col_wt 2; Arabidopsis thaliana; RNA-Seq AT4G01150.2 Arabidopsis thaliana 0.61 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01180.1 Arabidopsis thaliana 0.62 XH/XS domain-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G01190.1 Arabidopsis thaliana 0.84 phosphatidylinositol phosphate kinase 10 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01220.1 Arabidopsis thaliana 0.55 Nucleotide-diphospho-sugar transferase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01240.1 Arabidopsis thaliana 0.40 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01280.1 Arabidopsis thaliana 0.55 Homeodomain-like superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01280.2 Arabidopsis thaliana 0.63 Homeodomain-like superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G01310.1 Arabidopsis thaliana 0.44 Ribosomal L5P family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01328.1 Arabidopsis thaliana 0.39 Unknown ERR588048:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G01350.1 Arabidopsis thaliana 0.37 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01355.1 Arabidopsis thaliana 0.43 pre-tRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G01380.1 Arabidopsis thaliana 0.33 plastocyanin-like domain-containing protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G01400.3 Arabidopsis thaliana 0.47 Unknown SRR364678:nonGFP sample AT4G01430.1 Arabidopsis thaliana 0.46 nodulin MtN21 /EamA-like transporter family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G01450.3 Arabidopsis thaliana 0.59 nodulin MtN21 /EamA-like transporter family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G01460.1 Arabidopsis thaliana 0.34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1652315:prp8-7 AT4G01480.1 Arabidopsis thaliana 0.60 pyrophosphorylase 5 SRR364677:GFP sample AT4G01516.1 Arabidopsis thaliana 0.92 Unknown SRR627669:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627670:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq AT4G01535.1 Arabidopsis thaliana 0.95 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G01575.1 Arabidopsis thaliana 0.71 serine protease inhibitor, Kazal-type family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G01610.2 Arabidopsis thaliana 0.49 Cysteine proteinases superfamily protein SRR420818:phosphate-deficient sample #3 AT4G01630.1 Arabidopsis thaliana 0.50 expansin A17 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01650.1 Arabidopsis thaliana 0.56 Polyketide cyclase / dehydrase and lipid transport protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G01680.2 Arabidopsis thaliana 0.31 myb domain protein 55 SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT4G01703.1 Arabidopsis thaliana 0.60 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G01730.1 Arabidopsis thaliana 0.37 DHHC-type zinc finger family protein SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G01740.1 Arabidopsis thaliana 0.33 Cysteine/Histidine-rich C1 domain family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01770.1 Arabidopsis thaliana 0.75 rhamnogalacturonan xylosyltransferase 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01830.1 Arabidopsis thaliana 0.72 P-glycoprotein 5 SRR364677:GFP sample AT4G01880.1 Arabidopsis thaliana 0.34 methyltransferases SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G01890.1 Arabidopsis thaliana 0.94 Pectin lyase-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01915.1 Arabidopsis thaliana 0.35 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01915.2 Arabidopsis thaliana 0.37 Unknown SRR1652315:prp8-7 AT4G01920.1 Arabidopsis thaliana 0.61 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01925.1 Arabidopsis thaliana 0.70 Cysteine/Histidine-rich C1 domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01930.1 Arabidopsis thaliana 0.38 Cysteine/Histidine-rich C1 domain family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G01950.1 Arabidopsis thaliana 0.31 glycerol-3-phosphate acyltransferase 3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G01960.1 Arabidopsis thaliana 0.58 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G01985.1 Arabidopsis thaliana 0.42 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G01995.1 Arabidopsis thaliana 0.54 Unknown SRR1652315:prp8-7 AT4G02090.1 Arabidopsis thaliana 0.53 Unknown SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G02100.1 Arabidopsis thaliana 0.58 Heat shock protein DnaJ with tetratricopeptide repeat SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G02170.1 Arabidopsis thaliana 0.71 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G02200.1 Arabidopsis thaliana 0.33 Drought-responsive family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G02200.2 Arabidopsis thaliana 0.37 Drought-responsive family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G02210.1 Arabidopsis thaliana 0.45 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G02250.1 Arabidopsis thaliana 0.90 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G02290.1 Arabidopsis thaliana 0.60 glycosyl hydrolase 9B13 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G02314.1 Arabidopsis thaliana 0.47 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G02325.1 Arabidopsis thaliana 0.71 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G02405.2 Arabidopsis thaliana 0.52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G02489.1 Arabidopsis thaliana 0.41 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G02500.1 Arabidopsis thaliana 0.42 UDP-xylosyltransferase 2 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G02520.1 Arabidopsis thaliana 0.31 glutathione S-transferase PHI 2 SRR1049377:Arabidopsis thaliana Transcriptome or Gene expression SRR1049380:Arabidopsis thaliana Transcriptome or Gene expression SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G02540.1 Arabidopsis thaliana 0.40 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G02541.1 Arabidopsis thaliana 0.34 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT4G02550.1 Arabidopsis thaliana 0.35 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G02550.2 Arabidopsis thaliana 0.34 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G02550.3 Arabidopsis thaliana 0.53 Unknown SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G02555.1 Arabidopsis thaliana 0.31 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq AT4G02610.1 Arabidopsis thaliana 0.35 Aldolase-type TIM barrel family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G02650.1 Arabidopsis thaliana 0.90 ENTH/ANTH/VHS superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G02655.1 Arabidopsis thaliana 0.39 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G02670.1 Arabidopsis thaliana 0.30 indeterminate(ID)-domain 12 SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT4G02710.1 Arabidopsis thaliana 0.71 Kinase interacting (KIP1-like) family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G02733.1 Arabidopsis thaliana 0.54 F-box family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G02780.1 Arabidopsis thaliana 0.36 Terpenoid cyclases/Protein prenyltransferases superfamily protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT4G02810.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF3049) SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT4G02871.1 Arabidopsis thaliana 0.33 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq AT4G02890.3 Arabidopsis thaliana 0.86 Ubiquitin family protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT4G02920.1 Arabidopsis thaliana 0.31 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G02930.1 Arabidopsis thaliana 0.31 GTP binding Elongation factor Tu family protein SRR1508458:GSM1429679: Col-0 replicate1; Arabidopsis thaliana; RNA-Seq SRR1508459:GSM1429680: Col-0 replicate2; Arabidopsis thaliana; RNA-Seq SRR1508460:GSM1429681: Col-0 replicate3; Arabidopsis thaliana; RNA-Seq SRR1508461:GSM1429682: coryne-3 replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508462:GSM1429683: coryne-3 replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508463:GSM1429684: clavata2-gabi replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508464:GSM1429685: clavata2-gabi replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508465:GSM1429686: clavata2-gabi replicate 3; Arabidopsis thaliana; RNA-Seq SRR1508466:GSM1429688: cle40-2 replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508467:GSM1429691: cle40-2 replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508468:GSM1429693: cle40-2 replicate 3; Arabidopsis thaliana; RNA-Seq AT4G03090.2 Arabidopsis thaliana 0.48 sequence-specific DNA binding;sequence-specific DNA binding transcription factors SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G03175.1 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT4G03180.1 Arabidopsis thaliana 0.41 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT4G03190.1 Arabidopsis thaliana 0.42 GRR1-like protein 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G03230.1 Arabidopsis thaliana 0.35 S-locus lectin protein kinase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G03290.1 Arabidopsis thaliana 0.68 EF hand calcium-binding protein family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G03295.1 Arabidopsis thaliana 0.35 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G03310.1 Arabidopsis thaliana 0.68 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT4G03320.1 Arabidopsis thaliana 0.73 translocon at the inner envelope membrane of chloroplasts 20-IV SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G03330.1 Arabidopsis thaliana 0.56 syntaxin of plants 123 SRR364677:GFP sample AT4G03376.1 Arabidopsis thaliana 0.66 Unknown SRR1257403:GSM1371365: infected Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G03405.1 Arabidopsis thaliana 0.58 pre-tRNA SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR499987:sig6 replicate 1 SRR499988:gun1/sig6 replicate 1 SRR499989:gun1/sig6 replicate 2 AT4G03420.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF789) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G03430.1 Arabidopsis thaliana 0.36 pre-mRNA splicing factor-related SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G03445.1 Arabidopsis thaliana 0.31 MIR447A; miRNA SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G03510.1 Arabidopsis thaliana 0.49 RING membrane-anchor 1 SRR364677:GFP sample AT4G03530.1 Arabidopsis thaliana 0.64 transposable element gene SRR314818:GSM764082: Can_0_floral_bud_validation_rep1 AT4G03560.1 Arabidopsis thaliana 0.38 two-pore channel 1 SRR364677:GFP sample AT4G03565.1 Arabidopsis thaliana 0.60 Cystatin/monellin superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G03635.1 Arabidopsis thaliana 0.31 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT4G03723.1 Arabidopsis thaliana 0.37 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT4G03790.1 Arabidopsis thaliana 0.51 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT4G03795.1 Arabidopsis thaliana 0.33 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT4G03820.1 Arabidopsis thaliana 0.32 Protein of unknown function (DUF3537) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G03930.1 Arabidopsis thaliana 0.37 Plant invertase/pectin methylesterase inhibitor superfamily SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT4G03975.1 Arabidopsis thaliana 0.35 transposable element gene SRR1046850:GSM1287115: Arabidopsis thaliana Ct-1 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G04010.1 Arabidopsis thaliana 0.38 transposable element gene SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT4G04020.1 Arabidopsis thaliana 0.34 fibrillin SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G04077.1 Arabidopsis thaliana 0.82 other RNA SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G04078.1 Arabidopsis thaliana 0.62 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G04170.1 Arabidopsis thaliana 0.37 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT4G04223.1 Arabidopsis thaliana 0.30 other RNA SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G04250.1 Arabidopsis thaliana 0.39 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G04270.1 Arabidopsis thaliana 0.35 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G04273.1 Arabidopsis thaliana 0.46 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT4G04315.1 Arabidopsis thaliana 0.46 other RNA SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G04395.1 Arabidopsis thaliana 0.38 transposable element gene SRR501600:GSM938348: met1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 AT4G04423.1 Arabidopsis thaliana 0.63 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT4G04525.1 Arabidopsis thaliana 0.31 transposable element gene SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT4G04540.1 Arabidopsis thaliana 0.38 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G04601.1 Arabidopsis thaliana 0.60 Unknown SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G04653.1 Arabidopsis thaliana 0.36 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G04710.1 Arabidopsis thaliana 0.36 calcium-dependent protein kinase 22 SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G04740.2 Arabidopsis thaliana 0.46 calcium-dependent protein kinase 23 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G04760.1 Arabidopsis thaliana 0.38 Major facilitator superfamily protein SRR364677:GFP sample AT4G04800.1 Arabidopsis thaliana 0.38 methionine sulfoxide reductase B3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G04830.1 Arabidopsis thaliana 0.54 methionine sulfoxide reductase B5 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G04880.1 Arabidopsis thaliana 0.33 adenosine/AMP deaminase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G04900.1 Arabidopsis thaliana 0.53 ROP-interactive CRIB motif-containing protein 10 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G04930.1 Arabidopsis thaliana 0.92 fatty acid desaturase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G04953.1 Arabidopsis thaliana 0.63 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT4G04960.1 Arabidopsis thaliana 0.39 Concanavalin A-like lectin protein kinase family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G04980.1 Arabidopsis thaliana 0.62 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G04985.1 Arabidopsis thaliana 0.32 Eukaryotic aspartyl protease family protein SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G05000.1 Arabidopsis thaliana 0.34 Vacuolar protein sorting-associated protein VPS28 family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G05000.2 Arabidopsis thaliana 0.60 Vacuolar protein sorting-associated protein VPS28 family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G05018.1 Arabidopsis thaliana 0.44 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G05030.1 Arabidopsis thaliana 0.38 Copper transport protein family SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G05040.3 Arabidopsis thaliana 0.38 ankyrin repeat family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G05048.1 Arabidopsis thaliana 0.43 U49.1; snoRNA SRR527167:Col-0 on geldanamycin replicate2 AT4G05049.1 Arabidopsis thaliana 0.83 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G05050.3 Arabidopsis thaliana 0.33 ubiquitin 11 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G05053.1 Arabidopsis thaliana 0.46 Unknown SRR364677:GFP sample AT4G05087.1 Arabidopsis thaliana 0.93 Unknown SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G05091.1 Arabidopsis thaliana 0.77 Unknown SRR1257392:GSM1371354: infected Col0 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G05105.1 Arabidopsis thaliana 0.35 MIR397A; miRNA SRR960216:GSM1219971: WT_mRNA-Seq (rrp6l1-2 control); Arabidopsis thaliana; RNA-Seq ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G05170.1 Arabidopsis thaliana 0.47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G05220.1 Arabidopsis thaliana 0.72 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G05265.1 Arabidopsis thaliana 0.70 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT4G05320.6 Arabidopsis thaliana 0.30 polyubiquitin 10 SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT4G05330.1 Arabidopsis thaliana 0.75 ARF-GAP domain 13 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G05475.1 Arabidopsis thaliana 0.31 RNI-like superfamily protein SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G05508.1 Arabidopsis thaliana 0.33 MIR405D; miRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT4G05587.1 Arabidopsis thaliana 0.36 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT4G05630.1 Arabidopsis thaliana 0.30 Unknown SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G05631.1 Arabidopsis thaliana 0.36 Unknown SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT4G05632.1 Arabidopsis thaliana 0.52 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G05633.1 Arabidopsis thaliana 0.68 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G05640.1 Arabidopsis thaliana 0.80 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G06506.1 Arabidopsis thaliana 0.33 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT4G06517.1 Arabidopsis thaliana 0.50 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G06529.1 Arabidopsis thaliana 0.55 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT4G06555.1 Arabidopsis thaliana 0.39 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G06560.1 Arabidopsis thaliana 0.58 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 AT4G06570.1 Arabidopsis thaliana 0.33 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT4G06583.2 Arabidopsis thaliana 0.74 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G06590.1 Arabidopsis thaliana 0.87 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G06596.1 Arabidopsis thaliana 0.53 transposable element gene SRR501600:GSM938348: met1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT4G06599.1 Arabidopsis thaliana 0.57 ubiquitin family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G06603.1 Arabidopsis thaliana 0.57 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G06631.1 Arabidopsis thaliana 0.80 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G06634.2 Arabidopsis thaliana 0.36 zinc finger (C2H2 type) family protein SRR1652317:atrtf2-2Ho AT4G06639.1 Arabidopsis thaliana 0.32 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT4G06641.1 Arabidopsis thaliana 0.48 Unknown SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT4G06656.1 Arabidopsis thaliana 0.68 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G06664.1 Arabidopsis thaliana 0.37 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G06684.1 Arabidopsis thaliana 0.41 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G06688.1 Arabidopsis thaliana 0.32 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G06700.1 Arabidopsis thaliana 0.39 transposable element gene ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT4G06701.2 Arabidopsis thaliana 0.32 other RNA SRR1144843:WS 7 days on CIM AT4G06701.3 Arabidopsis thaliana 0.34 other RNA SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT4G06701.5 Arabidopsis thaliana 0.35 other RNA SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT4G06724.1 Arabidopsis thaliana 0.54 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G06728.1 Arabidopsis thaliana 0.97 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G06740.1 Arabidopsis thaliana 0.80 Unknown SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G07320.1 Arabidopsis thaliana 0.58 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G07390.1 Arabidopsis thaliana 0.38 Mannose-P-dolichol utilization defect 1 protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G07485.1 Arabidopsis thaliana 0.35 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT4G07500.1 Arabidopsis thaliana 0.31 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G07518.1 Arabidopsis thaliana 0.32 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G07520.1 Arabidopsis thaliana 0.44 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G07524.1 Arabidopsis thaliana 0.35 Ras-related small GTP-binding family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G07660.1 Arabidopsis thaliana 0.46 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT4G07747.1 Arabidopsis thaliana 0.58 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G07786.1 Arabidopsis thaliana 0.39 Unknown SRR925869:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (shoot) by 10uM MeJA treatment in Columbia wild-type bio rep 3 AT4G07850.1 Arabidopsis thaliana 0.37 transposable element gene SRR501622:GSM938365: kypsuvh5suvh6atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT4G07868.1 Arabidopsis thaliana 0.32 Unknown SRR1046870:GSM1287135: Arabidopsis thaliana No-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G07869.1 Arabidopsis thaliana 0.33 Unknown SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G07896.1 Arabidopsis thaliana 0.59 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G07942.1 Arabidopsis thaliana 0.38 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT4G07960.1 Arabidopsis thaliana 0.76 Cellulose-synthase-like C12 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G07990.2 Arabidopsis thaliana 0.45 Chaperone DnaJ-domain superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G08013.1 Arabidopsis thaliana 0.47 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G08035.2 Arabidopsis thaliana 0.45 other RNA SRR1046853:GSM1287118: Arabidopsis thaliana Edi-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046877:GSM1287142: Arabidopsis thaliana Rsch-4 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G08039.1 Arabidopsis thaliana 0.52 Defensin-like (DEFL) family protein SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G08040.1 Arabidopsis thaliana 0.49 1-aminocyclopropane-1-carboxylate synthase 11 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT4G08050.1 Arabidopsis thaliana 0.68 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT4G08111.1 Arabidopsis thaliana 0.45 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT4G08135.1 Arabidopsis thaliana 0.50 transposable element gene SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G08140.1 Arabidopsis thaliana 0.73 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G08150.1 Arabidopsis thaliana 0.44 KNOTTED-like from Arabidopsis thaliana SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G08151.1 Arabidopsis thaliana 0.92 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT4G08170.1 Arabidopsis thaliana 0.31 Inositol 1,3,4-trisphosphate 5/6-kinase family protein SRR446032:Vir.1h.B AT4G08176.1 Arabidopsis thaliana 0.50 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas AT4G08190.1 Arabidopsis thaliana 0.48 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G08240.2 Arabidopsis thaliana 0.32 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G08290.1 Arabidopsis thaliana 0.58 nodulin MtN21 /EamA-like transporter family protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT4G08290.2 Arabidopsis thaliana 0.31 nodulin MtN21 /EamA-like transporter family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G08300.1 Arabidopsis thaliana 0.36 nodulin MtN21 /EamA-like transporter family protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT4G08336.1 Arabidopsis thaliana 0.39 transposable element gene SRR314818:GSM764082: Can_0_floral_bud_validation_rep1 AT4G08345.1 Arabidopsis thaliana 0.69 pre-tRNA SRR671949:GSM1077435: Root_polyA_KNO3_Treatment_rep2; Arabidopsis thaliana; RNA-Seq AT4G08370.1 Arabidopsis thaliana 0.32 Proline-rich extensin-like family protein ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT4G08400.1 Arabidopsis thaliana 0.45 Proline-rich extensin-like family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G08460.1 Arabidopsis thaliana 0.49 Protein of unknown function (DUF1644) SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G08460.2 Arabidopsis thaliana 0.35 Protein of unknown function (DUF1644) SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT4G08460.3 Arabidopsis thaliana 0.33 Protein of unknown function (DUF1644) SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G08510.1 Arabidopsis thaliana 0.55 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G08550.1 Arabidopsis thaliana 0.54 electron carriers;protein disulfide oxidoreductases SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G08555.1 Arabidopsis thaliana 0.34 Unknown SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G08655.1 Arabidopsis thaliana 0.50 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT4G08691.1 Arabidopsis thaliana 0.34 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G08695.1 Arabidopsis thaliana 0.43 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G08700.1 Arabidopsis thaliana 0.60 Drug/metabolite transporter superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G08750.1 Arabidopsis thaliana 0.66 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G08780.1 Arabidopsis thaliana 0.44 Peroxidase superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G08790.1 Arabidopsis thaliana 0.32 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G08850.1 Arabidopsis thaliana 0.38 Leucine-rich repeat receptor-like protein kinase family protein SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT4G08867.1 Arabidopsis thaliana 0.84 Unknown SRR1652315:prp8-7 AT4G08869.1 Arabidopsis thaliana 0.79 Putative membrane lipoprotein SRR1652315:prp8-7 AT4G08870.1 Arabidopsis thaliana 0.46 Arginase/deacetylase superfamily protein SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT4G08874.1 Arabidopsis thaliana 0.60 Unknown SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT4G08875.1 Arabidopsis thaliana 0.71 Putative membrane lipoprotein SRR1257404:GSM1371366: infected Col0 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G08876.1 Arabidopsis thaliana 0.67 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G08949.1 Arabidopsis thaliana 0.43 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G08950.1 Arabidopsis thaliana 0.47 Phosphate-responsive 1 family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G08960.1 Arabidopsis thaliana 0.38 phosphotyrosyl phosphatase activator (PTPA) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G08967.1 Arabidopsis thaliana 0.38 Unknown ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G09000.1 Arabidopsis thaliana 0.33 general regulatory factor 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G09040.2 Arabidopsis thaliana 0.67 RNA-binding (RRM/RBD/RNP motifs) family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G09100.1 Arabidopsis thaliana 0.33 RING/U-box superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G09150.1 Arabidopsis thaliana 0.54 T-complex protein 11 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G09150.2 Arabidopsis thaliana 0.43 T-complex protein 11 SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT4G09400.1 Arabidopsis thaliana 0.54 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT4G09468.1 Arabidopsis thaliana 0.76 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas AT4G09490.1 Arabidopsis thaliana 0.66 Polynucleotidyl transferase, ribonuclease H-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G09500.1 Arabidopsis thaliana 0.34 UDP-Glycosyltransferase superfamily protein SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT4G09520.1 Arabidopsis thaliana 0.46 Cofactor-independent phosphoglycerate mutase ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G09584.1 Arabidopsis thaliana 0.94 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G09587.1 Arabidopsis thaliana 0.74 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT4G09590.1 Arabidopsis thaliana 0.59 NDR1/HIN1-like 22 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G09630.1 Arabidopsis thaliana 0.41 Protein of unknown function (DUF616) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G09644.1 Arabidopsis thaliana 0.68 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G09647.1 Arabidopsis thaliana 0.35 S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G09649.1 Arabidopsis thaliana 0.38 Unknown SRR1257398:GSM1371360: mock T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G09680.1 Arabidopsis thaliana 0.43 conserved telomere maintenance component 1 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT4G09720.1 Arabidopsis thaliana 0.46 RAB GTPase homolog G3A SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G09731.1 Arabidopsis thaliana 0.59 Unknown SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G09760.2 Arabidopsis thaliana 0.34 Protein kinase superfamily protein SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT4G09780.1 Arabidopsis thaliana 0.39 TRAF-like family protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G09795.1 Arabidopsis thaliana 0.33 low-molecular-weight cysteine-rich 13 SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT4G09840.1 Arabidopsis thaliana 0.38 Unknown SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G09950.1 Arabidopsis thaliana 0.41 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G09960.2 Arabidopsis thaliana 0.57 K-box region and MADS-box transcription factor family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT4G09984.1 Arabidopsis thaliana 0.36 low-molecular-weight cysteine-rich 34 SRR1046850:GSM1287115: Arabidopsis thaliana Ct-1 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G09990.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF579) SRR364677:GFP sample AT4G10010.1 Arabidopsis thaliana 0.78 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G10040.1 Arabidopsis thaliana 0.45 cytochrome c-2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G10050.1 Arabidopsis thaliana 0.31 esterase/lipase/thioesterase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G10112.1 Arabidopsis thaliana 0.31 Unknown SRR514997:GSM736442: At_mRNASeq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq SRR1578862:GSM1507902: Te ctrl rep3; Arabidopsis thaliana; RNA-Seq SRR1578869:GSM1507909: CT101 O3 rep1; Arabidopsis thaliana; RNA-Seq AT4G10115.1 Arabidopsis thaliana 0.35 SCR-like 20 SRR314818:GSM764082: Can_0_floral_bud_validation_rep1 AT4G10150.1 Arabidopsis thaliana 0.34 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G10160.1 Arabidopsis thaliana 0.57 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G10250.1 Arabidopsis thaliana 0.68 HSP20-like chaperones superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT4G10260.1 Arabidopsis thaliana 0.34 pfkB-like carbohydrate kinase family protein SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G10290.1 Arabidopsis thaliana 0.44 RmlC-like cupins superfamily protein SRR1013921:responses to BL SRR1013922:responses to BL SRR1013923:responses to BL SRR1013925:responses to BL AT4G10310.1 Arabidopsis thaliana 0.36 high-affinity K+ transporter 1 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G10370.1 Arabidopsis thaliana 0.37 Cysteine/Histidine-rich C1 domain family protein SRR364677:GFP sample AT4G10380.1 Arabidopsis thaliana 0.50 NOD26-like intrinsic protein 5;1 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G10400.1 Arabidopsis thaliana 0.38 F-box/RNI-like/FBD-like domains-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G10430.3 Arabidopsis thaliana 0.33 TMPIT-like protein ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G10457.1 Arabidopsis thaliana 0.34 SCR-like 1 SRR1046850:GSM1287115: Arabidopsis thaliana Ct-1 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G10507.1 Arabidopsis thaliana 0.32 other RNA SRR800754:GSM1111914: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT4G10530.1 Arabidopsis thaliana 0.63 Subtilase family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G10550.1 Arabidopsis thaliana 0.63 Subtilase family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G10550.3 Arabidopsis thaliana 0.69 Subtilase family protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G10596.1 Arabidopsis thaliana 0.63 Unknown SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G10655.1 Arabidopsis thaliana 0.41 Unknown SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G10690.1 Arabidopsis thaliana 0.58 transposable element gene SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G10800.1 Arabidopsis thaliana 0.32 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G10860.1 Arabidopsis thaliana 0.42 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT4G10895.1 Arabidopsis thaliana 0.37 Plant self-incompatibility protein S1 family SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G10920.1 Arabidopsis thaliana 0.43 transcriptional coactivator p15 (PC4) family protein (KELP) SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT4G10920.2 Arabidopsis thaliana 0.35 transcriptional coactivator p15 (PC4) family protein (KELP) SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq AT4G10925.1 Arabidopsis thaliana 0.33 Nuclear transport factor 2 (NTF2) family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G10960.1 Arabidopsis thaliana 0.33 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT4G10980.1 Arabidopsis thaliana 0.42 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 AT4G11000.1 Arabidopsis thaliana 0.63 Ankyrin repeat family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G11030.1 Arabidopsis thaliana 0.35 AMP-dependent synthetase and ligase family protein SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G11040.1 Arabidopsis thaliana 0.37 Protein phosphatase 2C family protein SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G11050.1 Arabidopsis thaliana 0.75 glycosyl hydrolase 9C3 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G11060.1 Arabidopsis thaliana 0.38 mitochondrially targeted single-stranded DNA binding protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G11070.1 Arabidopsis thaliana 0.54 WRKY family transcription factor SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G11080.1 Arabidopsis thaliana 0.48 HMG (high mobility group) box protein SRR1144843:WS 7 days on CIM AT4G11100.2 Arabidopsis thaliana 0.53 Unknown SRR949989:early shade responses in Arabidopsis adult plants (Col, 4 hr sun) SRR949993:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT4G11150.1 Arabidopsis thaliana 0.36 vacuolar ATP synthase subunit E1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G11190.1 Arabidopsis thaliana 0.32 Disease resistance-responsive (dirigent-like protein) family protein SRR974751:GSM1226367: mRNASS-L4h_2; Arabidopsis thaliana; RNA-Seq AT4G11210.1 Arabidopsis thaliana 0.52 Disease resistance-responsive (dirigent-like protein) family protein SRR1260038:P-_WT_R1 AT4G11211.1 Arabidopsis thaliana 0.30 Unknown SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G11213.1 Arabidopsis thaliana 0.33 pre-tRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT4G11310.1 Arabidopsis thaliana 0.79 Papain family cysteine protease SRR1105586:GSM1303959: fae1_11-12_A; Arabidopsis thaliana; RNA-Seq AT4G11340.1 Arabidopsis thaliana 0.82 Disease resistance protein (TIR-NBS-LRR class) family SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G11393.1 Arabidopsis thaliana 0.37 Defensin-like (DEFL) family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G11400.1 Arabidopsis thaliana 0.64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G11410.1 Arabidopsis thaliana 0.35 NAD(P)-binding Rossmann-fold superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G11470.1 Arabidopsis thaliana 0.83 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G11485.1 Arabidopsis thaliana 0.57 low-molecular-weight cysteine-rich 11 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G11550.1 Arabidopsis thaliana 0.62 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G11560.1 Arabidopsis thaliana 0.37 bromo-adjacent homology (BAH) domain-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G11642.1 Arabidopsis thaliana 0.79 Unknown SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G11740.1 Arabidopsis thaliana 0.45 Ubiquitin-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G11780.1 Arabidopsis thaliana 0.82 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G11876.1 Arabidopsis thaliana 0.54 Unknown SRR1652315:prp8-7 AT4G11890.1 Arabidopsis thaliana 0.62 Protein kinase superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G11930.1 Arabidopsis thaliana 0.36 Unknown SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 AT4G11940.1 Arabidopsis thaliana 0.42 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G12000.1 Arabidopsis thaliana 0.51 SNARE associated Golgi protein family SRR364677:GFP sample AT4G12005.1 Arabidopsis thaliana 0.47 Unknown SRR364677:GFP sample AT4G12030.2 Arabidopsis thaliana 0.32 bile acid transporter 5 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing AT4G12040.2 Arabidopsis thaliana 0.34 A20/AN1-like zinc finger family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G12050.1 Arabidopsis thaliana 0.36 Predicted AT-hook DNA-binding family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G12100.1 Arabidopsis thaliana 0.31 Cullin family protein SRR1046866:GSM1287131: Arabidopsis thaliana Mt-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G12330.1 Arabidopsis thaliana 0.55 cytochrome P450, family 706, subfamily A, polypeptide 7 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G12360.1 Arabidopsis thaliana 0.39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT4G12400.1 Arabidopsis thaliana 0.60 stress-inducible protein, putative SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G12405.1 Arabidopsis thaliana 0.69 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT4G12420.2 Arabidopsis thaliana 0.65 Cupredoxin superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G12432.1 Arabidopsis thaliana 0.77 conserved peptide upstream open reading frame 26 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G12450.1 Arabidopsis thaliana 0.34 Unknown SRR364677:GFP sample AT4G12460.1 Arabidopsis thaliana 0.37 OSBP(oxysterol binding protein)-related protein 2B SRR1652315:prp8-7 AT4G12510.1 Arabidopsis thaliana 0.32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR627647:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627648:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627649:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627650:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq AT4G12530.1 Arabidopsis thaliana 0.65 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G12545.1 Arabidopsis thaliana 0.32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 SRR926211:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 2 SRR926212:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 3 AT4G12550.1 Arabidopsis thaliana 0.36 Auxin-Induced in Root cultures 1 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 SRR926211:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 2 SRR926212:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 3 AT4G12580.1 Arabidopsis thaliana 0.38 Unknown SRR907286:SAD1 dynamically regulates alternative splicing and stress tolerance SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT4G12580.2 Arabidopsis thaliana 0.53 Unknown SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G12600.2 Arabidopsis thaliana 0.50 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT4G12610.1 Arabidopsis thaliana 0.45 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G12617.1 Arabidopsis thaliana 0.30 Unknown SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G12680.1 Arabidopsis thaliana 0.33 Unknown ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G12720.3 Arabidopsis thaliana 0.50 MutT/nudix family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G12720.4 Arabidopsis thaliana 0.60 MutT/nudix family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G12735.1 Arabidopsis thaliana 0.35 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G12770.2 Arabidopsis thaliana 0.44 Chaperone DnaJ-domain superfamily protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G12780.1 Arabidopsis thaliana 0.31 Chaperone DnaJ-domain superfamily protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G12790.2 Arabidopsis thaliana 0.34 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G12790.3 Arabidopsis thaliana 0.39 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR515336:GSM951358: rve8_mock_1; Arabidopsis thaliana; RNA-Seq SRR949991:early shade responses in Arabidopsis adult plants (Col, 1 hr shade) AT4G12820.1 Arabidopsis thaliana 0.52 F-box family protein with a domain of unknown function (DUF295) SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G12825.1 Arabidopsis thaliana 0.36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G12850.1 Arabidopsis thaliana 0.31 Far-red impaired responsive (FAR1) family protein SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT4G12860.1 Arabidopsis thaliana 0.33 EF hand calcium-binding protein family SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G12940.1 Arabidopsis thaliana 0.32 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G13020.3 Arabidopsis thaliana 0.45 Protein kinase superfamily protein SRR627686:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq AT4G13040.2 Arabidopsis thaliana 0.71 Integrase-type DNA-binding superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G13075.1 Arabidopsis thaliana 0.63 RALF-like 30 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G13100.1 Arabidopsis thaliana 0.40 RING/U-box superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT4G13130.1 Arabidopsis thaliana 0.84 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G13170.1 Arabidopsis thaliana 0.30 Ribosomal protein L13 family protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT4G13180.1 Arabidopsis thaliana 0.53 NAD(P)-binding Rossmann-fold superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G13190.1 Arabidopsis thaliana 0.52 Protein kinase superfamily protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G13195.1 Arabidopsis thaliana 0.37 CLAVATA3/ESR-RELATED 44 SRR1144842:be1-3 7 days on CIM AT4G13200.1 Arabidopsis thaliana 0.33 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G13210.2 Arabidopsis thaliana 0.36 Pectin lyase-like superfamily protein SRR1144842:be1-3 7 days on CIM AT4G13230.1 Arabidopsis thaliana 0.52 Late embryogenesis abundant protein (LEA) family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G13240.1 Arabidopsis thaliana 0.64 RHO guanyl-nucleotide exchange factor 9 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G13245.1 Arabidopsis thaliana 0.65 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT4G13250.2 Arabidopsis thaliana 0.69 NAD(P)-binding Rossmann-fold superfamily protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT4G13266.1 Arabidopsis thaliana 0.34 Unknown SRR1207199:GSM1359151: 35S:NGA 1; Arabidopsis thaliana; RNA-Seq SRR1207200:GSM1359152: 35S:NGA 2; Arabidopsis thaliana; RNA-Seq AT4G13310.2 Arabidopsis thaliana 0.43 cytochrome P450, family 71, subfamily A, polypeptide 20 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G13320.1 Arabidopsis thaliana 0.55 Unknown SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G13400.1 Arabidopsis thaliana 0.52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G13440.1 Arabidopsis thaliana 0.35 Calcium-binding EF-hand family protein SRR364677:GFP sample ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G13450.1 Arabidopsis thaliana 0.56 Adenine nucleotide alpha hydrolases-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G13450.2 Arabidopsis thaliana 0.82 Adenine nucleotide alpha hydrolases-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G13460.1 Arabidopsis thaliana 0.49 SU(VAR)3-9 homolog 9 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G13480.1 Arabidopsis thaliana 0.33 myb domain protein 79 SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT4G13495.2 Arabidopsis thaliana 0.46 other RNA SRR493098:Untreated Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR493101:Untreated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT4G13555.1 Arabidopsis thaliana 0.91 MIR397B; miRNA SRR1257403:GSM1371365: infected Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G13564.1 Arabidopsis thaliana 0.31 MIR841a; miRNA SRR1257393:GSM1371355: mock NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G13575.1 Arabidopsis thaliana 0.36 Unknown SRR493098:Untreated Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR493101:Untreated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT4G13590.1 Arabidopsis thaliana 0.51 Uncharacterized protein family (UPF0016) ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G13600.1 Arabidopsis thaliana 0.34 Carbohydrate-binding X8 domain superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G13610.1 Arabidopsis thaliana 0.67 DNA (cytosine-5-)-methyltransferase family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G13710.2 Arabidopsis thaliana 0.33 Pectin lyase-like superfamily protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G13730.1 Arabidopsis thaliana 0.35 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G13730.3 Arabidopsis thaliana 0.37 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G13770.1 Arabidopsis thaliana 0.37 cytochrome P450, family 83, subfamily A, polypeptide 1 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT4G13890.1 Arabidopsis thaliana 0.64 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G13930.1 Arabidopsis thaliana 0.31 serine hydroxymethyltransferase 4 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT4G13970.1 Arabidopsis thaliana 0.39 zinc ion binding SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT4G13996.1 Arabidopsis thaliana 0.67 Unknown SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G14030.1 Arabidopsis thaliana 0.34 selenium-binding protein 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G14040.1 Arabidopsis thaliana 0.31 selenium-binding protein 2 ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT4G14105.1 Arabidopsis thaliana 0.32 Unknown SRR068982:GSM607731: Ler-WTxCol-WT_Embryo AT4G14110.1 Arabidopsis thaliana 0.36 COP9 signalosome, subunit CSN8 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G14190.1 Arabidopsis thaliana 0.53 Pentatricopeptide repeat (PPR) superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT4G14226.1 Arabidopsis thaliana 0.56 Unknown SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G14251.1 Arabidopsis thaliana 0.55 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT4G14280.1 Arabidopsis thaliana 0.70 ARM repeat superfamily protein SRR364677:GFP sample AT4G14290.1 Arabidopsis thaliana 0.53 alpha/beta-Hydrolases superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14305.1 Arabidopsis thaliana 0.33 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14315.1 Arabidopsis thaliana 0.86 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G14370.1 Arabidopsis thaliana 0.74 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G14385.1 Arabidopsis thaliana 0.30 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G14504.1 Arabidopsis thaliana 0.84 MIR852a; miRNA SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G14520.1 Arabidopsis thaliana 0.39 DNA-directed RNA polymerase II-related ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14520.2 Arabidopsis thaliana 0.37 DNA-directed RNA polymerase II-related SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14530.1 Arabidopsis thaliana 0.43 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14560.1 Arabidopsis thaliana 0.62 indole-3-acetic acid inducible ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14590.1 Arabidopsis thaliana 0.30 embryo defective 2739 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G14640.1 Arabidopsis thaliana 0.46 calmodulin 8 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14690.1 Arabidopsis thaliana 0.73 Chlorophyll A-B binding family protein SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT4G14710.1 Arabidopsis thaliana 0.35 RmlC-like cupins superfamily protein SRR1257396:GSM1371358: infected NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G14743.1 Arabidopsis thaliana 0.34 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT4G14780.1 Arabidopsis thaliana 0.34 Protein kinase superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G14800.1 Arabidopsis thaliana 0.31 20S proteasome beta subunit D2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G14810.1 Arabidopsis thaliana 0.88 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G14811.1 Arabidopsis thaliana 0.86 MIR780a; miRNA SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G14815.1 Arabidopsis thaliana 0.31 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1061358:GSM1298726: FB1_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT4G14880.3 Arabidopsis thaliana 0.63 O-acetylserine (thiol) lyase (OAS-TL) isoform A1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14905.1 Arabidopsis thaliana 0.51 Galactose oxidase/kelch repeat superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G14910.1 Arabidopsis thaliana 0.40 HISTIDINE BIOSYNTHESIS 5B ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14910.3 Arabidopsis thaliana 0.55 HISTIDINE BIOSYNTHESIS 5B SRR345563:GSM798297: mRNASeq_skip_rep1 AT4G14960.2 Arabidopsis thaliana 0.42 Tubulin/FtsZ family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G14965.1 Arabidopsis thaliana 0.38 membrane-associated progesterone binding protein 4 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G15040.1 Arabidopsis thaliana 0.35 Subtilisin-like serine endopeptidase family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G15050.1 Arabidopsis thaliana 0.31 Protein of Unknown Function (DUF239) SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT4G15061.1 Arabidopsis thaliana 0.59 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G15075.1 Arabidopsis thaliana 0.50 FBD-like domain family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G15120.1 Arabidopsis thaliana 0.75 VQ motif-containing protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G15160.1 Arabidopsis thaliana 0.36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G15160.2 Arabidopsis thaliana 0.92 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G15210.2 Arabidopsis thaliana 0.48 beta-amylase 5 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT4G15230.1 Arabidopsis thaliana 0.31 pleiotropic drug resistance 2 SRR364677:GFP sample AT4G15236.1 Arabidopsis thaliana 0.39 ABC-2 and Plant PDR ABC-type transporter family protein SRR1104134:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT4G15242.1 Arabidopsis thaliana 0.50 other RNA SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G15248.1 Arabidopsis thaliana 0.50 B-box type zinc finger family protein SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G15250.1 Arabidopsis thaliana 0.34 B-box type zinc finger protein with CCT domain SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G15258.1 Arabidopsis thaliana 0.74 SNOR37-2; snoRNA SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT4G15260.1 Arabidopsis thaliana 0.55 UDP-Glycosyltransferase superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT4G15300.1 Arabidopsis thaliana 0.34 cytochrome P450, family 702, subfamily A, polypeptide 2 SRR364678:nonGFP sample AT4G15330.1 Arabidopsis thaliana 0.31 cytochrome P450, family 705, subfamily A, polypeptide 1 SRR926201:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 1 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 SRR926209:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 1 SRR926211:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 2 SRR926212:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 3 SRR926216:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 1 SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT4G15340.1 Arabidopsis thaliana 0.33 pentacyclic triterpene synthase 1 SRR926201:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 1 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 SRR926209:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 1 SRR926211:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 2 SRR926212:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 3 SRR926216:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 1 SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT4G15345.1 Arabidopsis thaliana 0.44 Unknown SRR1004791:tanorexia-1 Transcriptome Profiling E2 High-Light 30 minutes Replicate A AT4G15350.1 Arabidopsis thaliana 0.75 cytochrome P450, family 705, subfamily A, polypeptide 2 SRR364678:nonGFP sample AT4G15360.1 Arabidopsis thaliana 0.54 cytochrome P450, family 705, subfamily A, polypeptide 3 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G15370.1 Arabidopsis thaliana 0.57 baruol synthase 1 SRR364678:nonGFP sample SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G15393.1 Arabidopsis thaliana 0.38 cytochrome P450, family 702, subfamily A, polypeptide 5 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT4G15393.3 Arabidopsis thaliana 0.31 cytochrome P450, family 702, subfamily A, polypeptide 5 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G15398.1 Arabidopsis thaliana 0.62 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT4G15420.1 Arabidopsis thaliana 0.39 Ubiquitin fusion degradation UFD1 family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G15470.1 Arabidopsis thaliana 0.37 Bax inhibitor-1 family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G15475.1 Arabidopsis thaliana 0.37 F-box/RNI-like superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G15530.2 Arabidopsis thaliana 0.34 pyruvate orthophosphate dikinase SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT4G15563.1 Arabidopsis thaliana 0.33 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G15650.1 Arabidopsis thaliana 0.39 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G15660.1 Arabidopsis thaliana 0.38 Thioredoxin superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G15680.1 Arabidopsis thaliana 0.48 Thioredoxin superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G15710.1 Arabidopsis thaliana 0.45 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G15760.1 Arabidopsis thaliana 0.42 monooxygenase 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT4G15910.1 Arabidopsis thaliana 0.32 drought-induced 21 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G15953.1 Arabidopsis thaliana 0.55 Maternally expressed gene (MEG) family protein SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G15955.2 Arabidopsis thaliana 0.41 alpha/beta-Hydrolases superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G15960.1 Arabidopsis thaliana 0.46 alpha/beta-Hydrolases superfamily protein SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT4G15970.1 Arabidopsis thaliana 0.30 Nucleotide-diphospho-sugar transferase family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G15980.1 Arabidopsis thaliana 0.49 Plant invertase/pectin methylesterase inhibitor superfamily SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G16070.2 Arabidopsis thaliana 0.52 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G16220.1 Arabidopsis thaliana 0.45 GDSL-like Lipase/Acylhydrolase superfamily protein SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G16235.1 Arabidopsis thaliana 0.37 pre-tRNA SRR499983:col-0 replicate 1 AT4G16260.1 Arabidopsis thaliana 0.35 Glycosyl hydrolase superfamily protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G16350.1 Arabidopsis thaliana 0.33 calcineurin B-like protein 6 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G16360.1 Arabidopsis thaliana 0.37 5'-AMP-activated protein kinase beta-2 subunit protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G16360.2 Arabidopsis thaliana 0.57 5'-AMP-activated protein kinase beta-2 subunit protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G16444.1 Arabidopsis thaliana 0.46 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G16630.1 Arabidopsis thaliana 0.33 DEA(D/H)-box RNA helicase family protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT4G16650.1 Arabidopsis thaliana 0.39 O-fucosyltransferase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G16745.1 Arabidopsis thaliana 0.89 Exostosin family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G16807.1 Arabidopsis thaliana 0.57 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G16810.1 Arabidopsis thaliana 0.41 VEFS-Box of polycomb protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G16820.1 Arabidopsis thaliana 0.37 alpha/beta-Hydrolases superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G16960.1 Arabidopsis thaliana 0.41 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1046882:GSM1287147: Arabidopsis thaliana Sf-2 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G16980.1 Arabidopsis thaliana 0.33 arabinogalactan-protein family SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G17030.1 Arabidopsis thaliana 0.53 expansin-like B1 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G17100.1 Arabidopsis thaliana 0.44 Unknown SRR364677:GFP sample AT4G17140.1 Arabidopsis thaliana 0.53 pleckstrin homology (PH) domain-containing protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT4G17160.1 Arabidopsis thaliana 0.48 RAB GTPase homolog B1A SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G17220.1 Arabidopsis thaliana 0.45 microtubule-associated proteins 70-5 ERR588043:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588048:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G17250.1 Arabidopsis thaliana 0.68 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT4G17260.1 Arabidopsis thaliana 0.33 Lactate/malate dehydrogenase family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G17350.1 Arabidopsis thaliana 0.50 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region SRR1144843:WS 7 days on CIM AT4G17440.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF1639) SRR1207199:GSM1359151: 35S:NGA 1; Arabidopsis thaliana; RNA-Seq AT4G17440.2 Arabidopsis thaliana 0.30 Protein of unknown function (DUF1639) SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G17470.1 Arabidopsis thaliana 0.43 alpha/beta-Hydrolases superfamily protein SRR953029:RLK in plant defense - mutant LPS - biological replicate 1 SRR953030:RLK in plant defense - mutant LPS - biological replicate 2 SRR953371:RLK in plant defense - mutant LPS - biological replicate 1 SRR953372:RLK in plant defense - mutant LPS - biological replicate 2 AT4G17486.1 Arabidopsis thaliana 0.47 PPPDE putative thiol peptidase family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G17585.1 Arabidopsis thaliana 0.41 Aluminium activated malate transporter family protein SRR1046861:GSM1287126: Arabidopsis thaliana Kn-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046897:GSM1287162: Arabidopsis thaliana Zu-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G17587.1 Arabidopsis thaliana 0.57 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G17615.2 Arabidopsis thaliana 0.30 calcineurin B-like protein 1 SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G17616.1 Arabidopsis thaliana 0.50 Pentatricopeptide repeat (PPR) superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT4G17620.1 Arabidopsis thaliana 0.42 glycine-rich protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G17650.1 Arabidopsis thaliana 0.45 Polyketide cyclase / dehydrase and lipid transport protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G17785.1 Arabidopsis thaliana 0.44 myb domain protein 39 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G17788.1 Arabidopsis thaliana 0.38 MIR160/MIR160B; miRNA SRR949989:early shade responses in Arabidopsis adult plants (Col, 4 hr sun) SRR949993:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT4G17860.1 Arabidopsis thaliana 0.43 Protein of Unknown Function (DUF239) SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 AT4G17890.1 Arabidopsis thaliana 0.41 ARF-GAP domain 8 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G17890.2 Arabidopsis thaliana 0.34 ARF-GAP domain 8 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G17910.1 Arabidopsis thaliana 0.31 transferases, transferring acyl groups SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G17960.1 Arabidopsis thaliana 0.45 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G17980.1 Arabidopsis thaliana 0.47 NAC domain containing protein 71 SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT4G17998.1 Arabidopsis thaliana 0.35 Unknown SRR515339:GSM951360: rve8_mock_3; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G18000.1 Arabidopsis thaliana 0.54 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G18010.1 Arabidopsis thaliana 0.52 myo-inositol polyphosphate 5-phosphatase 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G18010.2 Arabidopsis thaliana 0.36 myo-inositol polyphosphate 5-phosphatase 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT4G18020.1 Arabidopsis thaliana 0.33 CheY-like two-component responsive regulator family protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G18030.1 Arabidopsis thaliana 0.37 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G18070.3 Arabidopsis thaliana 0.50 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G18140.2 Arabidopsis thaliana 0.34 SCP1-like small phosphatase 4b SRR364677:GFP sample AT4G18150.1 Arabidopsis thaliana 0.41 Kinase-related protein of unknown function (DUF1296) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G18170.1 Arabidopsis thaliana 0.35 WRKY DNA-binding protein 28 SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT4G18195.1 Arabidopsis thaliana 0.53 purine permease 8 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G18230.1 Arabidopsis thaliana 0.37 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G18260.1 Arabidopsis thaliana 0.40 Cytochrome b561/ferric reductase transmembrane protein family SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G18280.1 Arabidopsis thaliana 0.30 glycine-rich cell wall protein-related SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G18300.1 Arabidopsis thaliana 0.33 Trimeric LpxA-like enzyme SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G18310.1 Arabidopsis thaliana 0.43 Unknown SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT4G18320.1 Arabidopsis thaliana 0.30 Unknown SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT4G18335.1 Arabidopsis thaliana 0.39 Unknown SRR1144843:WS 7 days on CIM AT4G18350.1 Arabidopsis thaliana 0.89 nine-cis-epoxycarotenoid dioxygenase 2 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT4G18370.1 Arabidopsis thaliana 0.32 DEGP protease 5 SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. AT4G18380.1 Arabidopsis thaliana 0.69 F-box family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G18395.1 Arabidopsis thaliana 0.79 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G18422.1 Arabidopsis thaliana 0.49 Unknown SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT4G18450.1 Arabidopsis thaliana 0.35 Integrase-type DNA-binding superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A SRR364678:nonGFP sample AT4G18540.1 Arabidopsis thaliana 0.50 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G18550.1 Arabidopsis thaliana 0.64 alpha/beta-Hydrolases superfamily protein SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT4G18596.1 Arabidopsis thaliana 0.94 Pollen Ole e 1 allergen and extensin family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G18620.1 Arabidopsis thaliana 0.47 PYR1-like 13 SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq AT4G18640.1 Arabidopsis thaliana 0.56 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G18670.1 Arabidopsis thaliana 0.53 Leucine-rich repeat (LRR) family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G18690.1 Arabidopsis thaliana 0.35 Unknown SRR627643:GSM1047659: pif3-RNA; Arabidopsis thaliana; RNA-Seq SRR627644:GSM1047659: pif3-RNA; Arabidopsis thaliana; RNA-Seq AT4G18700.1 Arabidopsis thaliana 0.81 CBL-interacting protein kinase 12 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G18720.1 Arabidopsis thaliana 0.64 Transcription factor IIS protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G18725.1 Arabidopsis thaliana 0.41 pre-tRNA SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR499987:sig6 replicate 1 AT4G18740.2 Arabidopsis thaliana 0.53 Rho termination factor SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G18790.1 Arabidopsis thaliana 0.71 NRAMP metal ion transporter family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G18800.1 Arabidopsis thaliana 0.44 RAB GTPase homolog A1D SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G18823.1 Arabidopsis thaliana 0.48 Defensin-like (DEFL) family protein SRR1046856:GSM1287121: Arabidopsis thaliana Hi-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G18860.1 Arabidopsis thaliana 0.44 Unknown SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G18905.2 Arabidopsis thaliana 0.80 Transducin/WD40 repeat-like superfamily protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT4G18920.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF1264) ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G18950.1 Arabidopsis thaliana 0.42 Integrin-linked protein kinase family SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G18960.1 Arabidopsis thaliana 0.54 K-box region and MADS-box transcription factor family protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G19003.2 Arabidopsis thaliana 0.34 E2F/DP family winged-helix DNA-binding domain ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G19030.1 Arabidopsis thaliana 0.31 NOD26-like major intrinsic protein 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G19035.1 Arabidopsis thaliana 0.40 low-molecular-weight cysteine-rich 7 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G19038.1 Arabidopsis thaliana 0.91 low-molecular-weight cysteine-rich 15 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G19045.1 Arabidopsis thaliana 0.77 Mob1/phocein family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G19080.1 Arabidopsis thaliana 0.48 Protein of unknown function (DUF594) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G19112.1 Arabidopsis thaliana 0.35 conserved peptide upstream open reading frame 25 SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT4G19120.2 Arabidopsis thaliana 0.47 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR1046849:GSM1287114: Arabidopsis thaliana Bur-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G19160.1 Arabidopsis thaliana 0.32 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT4G19185.1 Arabidopsis thaliana 0.43 nodulin MtN21 /EamA-like transporter family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G19210.1 Arabidopsis thaliana 0.60 RNAse l inhibitor protein 2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G19220.1 Arabidopsis thaliana 0.56 Tetratricopeptide repeat (TPR)-like superfamily protein SRR364677:GFP sample AT4G19395.1 Arabidopsis thaliana 0.70 MIR168/MIR168A; miRNA SRR1257391:GSM1371353: infected Col0 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G19520.1 Arabidopsis thaliana 0.76 disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G19550.1 Arabidopsis thaliana 0.54 zinc ion binding;transcription regulators SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G19550.2 Arabidopsis thaliana 0.36 zinc ion binding;transcription regulators SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G19670.1 Arabidopsis thaliana 0.36 RING/U-box superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G19690.1 Arabidopsis thaliana 0.42 iron-regulated transporter 1 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT4G19690.2 Arabidopsis thaliana 0.62 iron-regulated transporter 1 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT4G19730.1 Arabidopsis thaliana 0.58 Glycosyl hydrolase superfamily protein SRR1046921:GSM1287179: Mt-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046922:GSM1287180: Mt-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT4G19750.1 Arabidopsis thaliana 0.77 Glycosyl hydrolase family protein with chitinase insertion domain SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G19760.1 Arabidopsis thaliana 0.60 Glycosyl hydrolase family protein with chitinase insertion domain SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G19829.1 Arabidopsis thaliana 0.60 Unknown SRR1257401:GSM1371363: mock Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G19870.2 Arabidopsis thaliana 0.46 Galactose oxidase/kelch repeat superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G19880.1 Arabidopsis thaliana 0.53 Glutathione S-transferase family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G19902.1 Arabidopsis thaliana 0.84 Unknown SRR1652317:atrtf2-2Ho AT4G19925.1 Arabidopsis thaliana 0.45 Toll-Interleukin-Resistance (TIR) domain family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G19940.1 Arabidopsis thaliana 0.63 F-box and associated interaction domains-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G20000.1 Arabidopsis thaliana 0.39 VQ motif-containing protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT4G20090.1 Arabidopsis thaliana 0.35 Pentatricopeptide repeat (PPR) superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G20160.1 Arabidopsis thaliana 0.41 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G20200.1 Arabidopsis thaliana 0.35 Terpenoid cyclases/Protein prenyltransferases superfamily protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G20235.1 Arabidopsis thaliana 0.34 cytochrome P450, family 71, subfamily A, polypeptide 28 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G20250.1 Arabidopsis thaliana 0.45 Unknown SRR515330:GSM951355: rve8_DEX_1; Arabidopsis thaliana; RNA-Seq AT4G20260.5 Arabidopsis thaliana 0.30 plasma-membrane associated cation-binding protein 1 SRR627675:GSM1047664: pif135-RNA; Arabidopsis thaliana; RNA-Seq AT4G20340.1 Arabidopsis thaliana 0.39 Transcription factor TFIIE, alpha subunit SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G20370.1 Arabidopsis thaliana 0.34 PEBP (phosphatidylethanolamine-binding protein) family protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq ERR588048:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G20380.2 Arabidopsis thaliana 0.57 LSD1 zinc finger family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G20380.5 Arabidopsis thaliana 0.67 LSD1 zinc finger family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G20380.6 Arabidopsis thaliana 0.47 LSD1 zinc finger family protein SRR392126:GSM852816: mRNA-seq in flc, technical replicate 1; Arabidopsis thaliana; RNA-Seq AT4G20410.1 Arabidopsis thaliana 0.40 gamma-soluble NSF attachment protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G20450.1 Arabidopsis thaliana 0.46 Leucine-rich repeat protein kinase family protein SRR364677:GFP sample AT4G20470.1 Arabidopsis thaliana 0.31 Unknown SRR446030:Avr.1h.B AT4G20700.1 Arabidopsis thaliana 0.49 Protein of unknown function (DUF1204) SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G20730.1 Arabidopsis thaliana 0.31 transposable element gene SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT4G20800.1 Arabidopsis thaliana 0.53 FAD-binding Berberine family protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT4G20830.1 Arabidopsis thaliana 0.42 FAD-binding Berberine family protein SRR364677:GFP sample SRR364678:nonGFP sample AT4G20840.1 Arabidopsis thaliana 0.33 FAD-binding Berberine family protein SRR364677:GFP sample AT4G20870.1 Arabidopsis thaliana 0.36 fatty acid hydroxylase 2 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G20890.1 Arabidopsis thaliana 0.75 tubulin beta-9 chain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G20910.1 Arabidopsis thaliana 0.45 double-stranded RNA binding protein-related / DsRBD protein-related SRR307071:GSM756823: Ler x Col embryo RNA-seq AT4G21010.1 Arabidopsis thaliana 0.80 Transcription initiation factor TFIIE, beta subunit SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G21020.1 Arabidopsis thaliana 0.50 Late embryogenesis abundant protein (LEA) family protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G21105.1 Arabidopsis thaliana 0.43 cytochrome-c oxidases;electron carriers SRR345564:GSM798298: mRNASeq_skip_rep2 AT4G21192.1 Arabidopsis thaliana 0.81 Cytochrome c oxidase biogenesis protein Cmc1-like ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G21200.2 Arabidopsis thaliana 0.64 gibberellin 2-oxidase 8 SRR797231:Identification of Cytokinin Responsive Genes Using Microarray Meta-analysis and RNA-seq in Arabidopsis thaliana AT4G21213.1 Arabidopsis thaliana 0.57 Unknown SRR1257398:GSM1371360: mock T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G21216.1 Arabidopsis thaliana 0.60 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G21220.1 Arabidopsis thaliana 0.35 Trimeric LpxA-like enzymes superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G21250.1 Arabidopsis thaliana 0.44 Sulfite exporter TauE/SafE family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT4G21326.1 Arabidopsis thaliana 0.56 subtilase 3.12 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G21340.1 Arabidopsis thaliana 0.71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G21500.1 Arabidopsis thaliana 0.33 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G21510.1 Arabidopsis thaliana 0.47 F-box family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G21560.3 Arabidopsis thaliana 0.36 vacuolar protein sorting-associated protein 28 homolog 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G21580.2 Arabidopsis thaliana 0.37 oxidoreductase, zinc-binding dehydrogenase family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A AT4G21600.1 Arabidopsis thaliana 0.43 endonuclease 5 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G21610.1 Arabidopsis thaliana 0.40 lsd one like 2 SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G21670.1 Arabidopsis thaliana 0.39 C-terminal domain phosphatase-like 1 SRR1584460:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT4G21700.1 Arabidopsis thaliana 0.37 Protein of unknown function (DUF2921) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G21730.1 Arabidopsis thaliana 0.67 Unknown SRR627661:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq SRR627662:GSM1047662: pif345-RNA; Arabidopsis thaliana; RNA-Seq AT4G21830.2 Arabidopsis thaliana 0.34 methionine sulfoxide reductase B7 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 AT4G21850.2 Arabidopsis thaliana 0.31 methionine sulfoxide reductase B9 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT4G21895.1 Arabidopsis thaliana 0.78 DNA binding SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G21902.1 Arabidopsis thaliana 0.79 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G21903.2 Arabidopsis thaliana 0.53 MATE efflux family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT4G21910.1 Arabidopsis thaliana 0.30 MATE efflux family protein SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G21910.3 Arabidopsis thaliana 0.32 MATE efflux family protein SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq SRR1207198:GSM1359150: nga 3; Arabidopsis thaliana; RNA-Seq AT4G21920.1 Arabidopsis thaliana 0.36 Unknown SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT4G21950.1 Arabidopsis thaliana 0.56 Unknown SRR446041:Avr.12h.A AT4G21990.1 Arabidopsis thaliana 0.31 APS reductase 3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G22050.1 Arabidopsis thaliana 0.42 Eukaryotic aspartyl protease family protein SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT4G22060.1 Arabidopsis thaliana 0.54 F-box family protein with a domain of unknown function (DUF295) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G22080.1 Arabidopsis thaliana 0.42 root hair specific 14 SRR364677:GFP sample AT4G22100.1 Arabidopsis thaliana 0.44 beta glucosidase 2 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G22105.1 Arabidopsis thaliana 0.39 SCR-like 26 SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT4G22110.1 Arabidopsis thaliana 0.33 GroES-like zinc-binding dehydrogenase family protein SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT4G22115.1 Arabidopsis thaliana 0.53 SCR-like 14 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G22160.1 Arabidopsis thaliana 0.40 Unknown SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT4G22210.1 Arabidopsis thaliana 0.34 low-molecular-weight cysteine-rich 85 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 AT4G22214.1 Arabidopsis thaliana 0.58 Defensin-like (DEFL) family protein SRR364677:GFP sample AT4G22217.1 Arabidopsis thaliana 0.77 Arabidopsis defensin-like protein SRR364677:GFP sample AT4G22230.2 Arabidopsis thaliana 0.33 Arabidopsis defensin-like protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT4G22233.1 Arabidopsis thaliana 0.30 other RNA SRR1257390:GSM1371352: mock Col0 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G22235.1 Arabidopsis thaliana 0.30 Arabidopsis defensin-like protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G22235.2 Arabidopsis thaliana 0.41 Arabidopsis defensin-like protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT4G22240.1 Arabidopsis thaliana 0.60 Plastid-lipid associated protein PAP / fibrillin family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G22260.1 Arabidopsis thaliana 0.30 Alternative oxidase family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G22300.1 Arabidopsis thaliana 0.33 carboxylesterases ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G22330.1 Arabidopsis thaliana 0.33 Alkaline phytoceramidase (aPHC) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G22430.1 Arabidopsis thaliana 0.35 F-box family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G22470.1 Arabidopsis thaliana 0.32 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein SRR446030:Avr.1h.B AT4G22485.1 Arabidopsis thaliana 0.33 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G22505.1 Arabidopsis thaliana 0.34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq SRR1548686:GSM1477531: WT Col rep 3,1; Arabidopsis thaliana; RNA-Seq SRR1548687:GSM1477532: WT Col rep 3,2; Arabidopsis thaliana; RNA-Seq AT4G22513.1 Arabidopsis thaliana 0.45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G22560.1 Arabidopsis thaliana 0.50 Unknown SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT4G22580.1 Arabidopsis thaliana 0.30 Exostosin family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G22592.1 Arabidopsis thaliana 0.34 conserved peptide upstream open reading frame 27 SRR364677:GFP sample AT4G22610.1 Arabidopsis thaliana 0.36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR926201:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 1 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 SRR926209:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 1 SRR926211:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 2 SRR926212:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 3 SRR926216:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 1 SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT4G22640.1 Arabidopsis thaliana 0.66 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR364677:GFP sample AT4G22666.1 Arabidopsis thaliana 0.77 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G22666.2 Arabidopsis thaliana 0.44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1260038:P-_WT_R1 AT4G22710.1 Arabidopsis thaliana 0.39 cytochrome P450, family 706, subfamily A, polypeptide 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G22753.2 Arabidopsis thaliana 0.45 sterol 4-alpha methyl oxidase 1-3 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G22870.1 Arabidopsis thaliana 0.35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT4G22870.2 Arabidopsis thaliana 0.65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT4G22880.2 Arabidopsis thaliana 0.35 leucoanthocyanidin dioxygenase SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT4G22890.4 Arabidopsis thaliana 0.61 PGR5-LIKE A SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G22930.1 Arabidopsis thaliana 0.32 pyrimidin 4 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G22990.1 Arabidopsis thaliana 0.33 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein SRR1046871:GSM1287136: Arabidopsis thaliana Oy-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046874:GSM1287139: Arabidopsis thaliana Po-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G23010.2 Arabidopsis thaliana 0.78 UDP-galactose transporter 2 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G23040.1 Arabidopsis thaliana 0.40 Ubiquitin-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G23070.1 Arabidopsis thaliana 0.68 RHOMBOID-like protein 7 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G23090.2 Arabidopsis thaliana 0.32 Unknown SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq AT4G23100.3 Arabidopsis thaliana 0.62 glutamate-cysteine ligase SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G23140.2 Arabidopsis thaliana 0.70 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G23150.1 Arabidopsis thaliana 0.34 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT4G23160.1 Arabidopsis thaliana 0.42 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 SRR514998:GSM736442: At_mRNASeq AT4G23220.1 Arabidopsis thaliana 0.39 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G23271.1 Arabidopsis thaliana 0.82 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G23290.1 Arabidopsis thaliana 0.39 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 SRR1581016:SAMN02741910 AT4G23360.1 Arabidopsis thaliana 0.54 Unknown SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 AT4G23370.1 Arabidopsis thaliana 0.43 Unknown SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G23375.1 Arabidopsis thaliana 0.43 MIR845b; miRNA SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G23380.1 Arabidopsis thaliana 0.39 Protein of Unknown Function (DUF239) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G23387.1 Arabidopsis thaliana 0.81 MIR845a; miRNA SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G23390.1 Arabidopsis thaliana 0.36 Protein of Unknown Function (DUF239) SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G23420.2 Arabidopsis thaliana 0.38 NAD(P)-binding Rossmann-fold superfamily protein SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G23420.3 Arabidopsis thaliana 0.67 NAD(P)-binding Rossmann-fold superfamily protein SRR345561:GSM798295: mRNASeq_WT_rep1 AT4G23450.3 Arabidopsis thaliana 0.33 RING/U-box superfamily protein ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT4G23470.2 Arabidopsis thaliana 0.31 PLAC8 family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G23493.1 Arabidopsis thaliana 0.46 Unknown SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G23500.1 Arabidopsis thaliana 0.33 Pectin lyase-like superfamily protein SRR1548688:GSM1477533: lsm4 rep 1,1; Arabidopsis thaliana; RNA-Seq SRR1548689:GSM1477534: lsm4 rep 1,2; Arabidopsis thaliana; RNA-Seq SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq SRR1548692:GSM1477537: lsm4 rep 3,1; Arabidopsis thaliana; RNA-Seq SRR1548693:GSM1477538: lsm4 rep 3,2; Arabidopsis thaliana; RNA-Seq AT4G23515.1 Arabidopsis thaliana 0.64 Toll-Interleukin-Resistance (TIR) domain family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G23560.1 Arabidopsis thaliana 0.37 glycosyl hydrolase 9B15 SRR477077:GSM912636: bzr1-1D RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477078:GSM912637: bzr1-1D RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT4G23570.1 Arabidopsis thaliana 0.57 phosphatase-related SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G23590.1 Arabidopsis thaliana 0.62 Tyrosine transaminase family protein SRR364678:nonGFP sample ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G23660.2 Arabidopsis thaliana 0.33 polyprenyltransferase 1 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT4G23680.1 Arabidopsis thaliana 0.32 Polyketide cyclase/dehydrase and lipid transport superfamily protein SRR1652316:atrtf2-2He SRR1652317:atrtf2-2Ho AT4G23690.1 Arabidopsis thaliana 0.46 Disease resistance-responsive (dirigent-like protein) family protein SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G23713.1 Arabidopsis thaliana 0.41 MIR319/MIR319a; miRNA SRR584127:GSM1017168: PTB_MI12_R1; Arabidopsis thaliana; RNA-Seq AT4G23895.1 Arabidopsis thaliana 0.51 Pleckstrin homology (PH) domain-containing protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G23895.3 Arabidopsis thaliana 0.35 Pleckstrin homology (PH) domain-containing protein SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G23900.1 Arabidopsis thaliana 0.31 Nucleoside diphosphate kinase family protein SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G23920.1 Arabidopsis thaliana 0.49 UDP-D-glucose/UDP-D-galactose 4-epimerase 2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G23930.2 Arabidopsis thaliana 0.50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G23990.1 Arabidopsis thaliana 0.37 cellulose synthase like G3 SRR1061364:GSM1298732: L2_HiSeq; Arabidopsis thaliana; RNA-Seq SRR1061365:GSM1298733: L2_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT4G24030.1 Arabidopsis thaliana 0.31 Unknown SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT4G24070.1 Arabidopsis thaliana 0.62 carbon-carbon lyases SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G24080.1 Arabidopsis thaliana 0.53 aldolase like ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G24120.1 Arabidopsis thaliana 0.32 YELLOW STRIPE like 1 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G24160.2 Arabidopsis thaliana 0.57 alpha/beta-Hydrolases superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G24170.1 Arabidopsis thaliana 0.41 ATP binding microtubule motor family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G24175.1 Arabidopsis thaliana 0.34 Unknown SRR1046888:GSM1287153: Arabidopsis thaliana Wil-2 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046891:GSM1287156: Arabidopsis thaliana Ws-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046894:GSM1287159: Arabidopsis thaliana Wu-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G24180.1 Arabidopsis thaliana 0.36 THAUMATIN-LIKE PROTEIN 1 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G24190.2 Arabidopsis thaliana 0.41 Chaperone protein htpG family protein SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT4G24231.1 Arabidopsis thaliana 0.66 Unknown SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT4G24270.2 Arabidopsis thaliana 0.32 EMBRYO DEFECTIVE 140 SRR1144843:WS 7 days on CIM AT4G24380.1 Arabidopsis thaliana 0.38 Unknown SRR1046862:GSM1287127: Arabidopsis thaliana Ler-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G24390.1 Arabidopsis thaliana 0.37 RNI-like superfamily protein SRR1046862:GSM1287127: Arabidopsis thaliana Ler-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G24390.2 Arabidopsis thaliana 0.44 RNI-like superfamily protein SRR1046862:GSM1287127: Arabidopsis thaliana Ler-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G24410.1 Arabidopsis thaliana 0.42 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT4G24415.1 Arabidopsis thaliana 0.57 MIR824a; miRNA SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G24415.2 Arabidopsis thaliana 0.76 MIR824a; miRNA SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G24415.3 Arabidopsis thaliana 0.54 MIR824a; miRNA SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G24470.3 Arabidopsis thaliana 0.41 GATA-type zinc finger protein with TIFY domain SRR609411:RNAseq data from activation tagging mutant of OSD1 in Ws AT4G24490.2 Arabidopsis thaliana 0.42 RAB geranylgeranyl transferase alpha subunit 1 SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT4G24500.1 Arabidopsis thaliana 0.30 hydroxyproline-rich glycoprotein family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G24550.2 Arabidopsis thaliana 0.59 Clathrin adaptor complexes medium subunit family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G24580.1 Arabidopsis thaliana 0.34 Rho GTPase activation protein (RhoGAP) with PH domain SRR364677:GFP sample SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G24620.2 Arabidopsis thaliana 0.58 phosphoglucose isomerase 1 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT4G24630.1 Arabidopsis thaliana 0.74 DHHC-type zinc finger family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G24640.1 Arabidopsis thaliana 0.95 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G24650.1 Arabidopsis thaliana 0.52 isopentenyltransferase 4 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G24740.1 Arabidopsis thaliana 0.31 FUS3-complementing gene 2 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G24740.2 Arabidopsis thaliana 0.42 FUS3-complementing gene 2 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G24760.1 Arabidopsis thaliana 0.39 alpha/beta-Hydrolases superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G24790.1 Arabidopsis thaliana 0.59 AAA-type ATPase family protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G24820.2 Arabidopsis thaliana 0.42 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G24830.2 Arabidopsis thaliana 0.35 arginosuccinate synthase family SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT4G24940.1 Arabidopsis thaliana 0.43 SUMO-activating enzyme 1A SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G24960.3 Arabidopsis thaliana 0.58 HVA22 homologue D SRR944365:GSM1197427: Cold-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT4G24970.1 Arabidopsis thaliana 0.54 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G24973.1 Arabidopsis thaliana 0.30 Plant self-incompatibility protein S1 family SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G25020.1 Arabidopsis thaliana 0.31 D111/G-patch domain-containing protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G25070.1 Arabidopsis thaliana 0.36 Unknown SRR364677:GFP sample AT4G25070.2 Arabidopsis thaliana 0.49 Unknown SRR364677:GFP sample AT4G25080.4 Arabidopsis thaliana 0.41 magnesium-protoporphyrin IX methyltransferase SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. AT4G25080.5 Arabidopsis thaliana 0.37 magnesium-protoporphyrin IX methyltransferase SRR345562:GSM798296: mRNASeq_WT_rep2 SRR392131:GSM852821: mRNA-seq in fcl, technical replicate 2; Arabidopsis thaliana; RNA-Seq SRR392132:GSM852822: mRNA-seq in fcl, technical replicate 3; Arabidopsis thaliana; RNA-Seq SRR392133:GSM852823: mRNA-seq in fcl, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT4G25090.2 Arabidopsis thaliana 0.45 Riboflavin synthase-like superfamily protein SRR1046890:GSM1287155: Arabidopsis thaliana Ws-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G25100.1 Arabidopsis thaliana 0.84 Fe superoxide dismutase 1 SRR345562:GSM798296: mRNASeq_WT_rep2 AT4G25100.4 Arabidopsis thaliana 0.34 Fe superoxide dismutase 1 SRR515337:GSM951359: rve8_mock_2; Arabidopsis thaliana; RNA-Seq AT4G25100.5 Arabidopsis thaliana 0.51 Fe superoxide dismutase 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G25110.2 Arabidopsis thaliana 0.40 metacaspase 2 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G25150.1 Arabidopsis thaliana 0.75 HAD superfamily, subfamily IIIB acid phosphatase SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G25190.1 Arabidopsis thaliana 0.31 Family of unknown function (DUF566) SRR364677:GFP sample AT4G25200.1 Arabidopsis thaliana 0.31 mitochondrion-localized small heat shock protein 23.6 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT4G25235.1 Arabidopsis thaliana 0.51 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G25250.1 Arabidopsis thaliana 0.59 Plant invertase/pectin methylesterase inhibitor superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G25310.1 Arabidopsis thaliana 0.56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR364678:nonGFP sample AT4G25340.2 Arabidopsis thaliana 0.68 FK506 BINDING PROTEIN 53 SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT4G25370.1 Arabidopsis thaliana 0.32 Double Clp-N motif protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G25380.1 Arabidopsis thaliana 0.53 stress-associated protein 10 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G25390.2 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT4G25420.1 Arabidopsis thaliana 0.67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G25435.1 Arabidopsis thaliana 0.43 pre-tRNA SRR671949:GSM1077435: Root_polyA_KNO3_Treatment_rep2; Arabidopsis thaliana; RNA-Seq AT4G25450.3 Arabidopsis thaliana 0.43 non-intrinsic ABC protein 8 SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT4G25470.1 Arabidopsis thaliana 0.33 C-repeat/DRE binding factor 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G25590.1 Arabidopsis thaliana 0.78 actin depolymerizing factor 7 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G25610.1 Arabidopsis thaliana 0.30 C2H2-like zinc finger protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G25610.2 Arabidopsis thaliana 0.49 C2H2-like zinc finger protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G25631.1 Arabidopsis thaliana 0.55 U60.2F; snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT4G25635.1 Arabidopsis thaliana 0.50 pre-tRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT4G25650.2 Arabidopsis thaliana 0.70 ACD1-like SRR1652317:atrtf2-2Ho AT4G25660.1 Arabidopsis thaliana 0.36 PPPDE putative thiol peptidase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G25700.2 Arabidopsis thaliana 0.41 beta-hydroxylase 1 SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT4G25707.1 Arabidopsis thaliana 0.72 Unknown SRR1257399:GSM1371361: infected T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G25719.1 Arabidopsis thaliana 0.81 other RNA SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G25720.3 Arabidopsis thaliana 0.62 glutaminyl cyclase SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G25730.1 Arabidopsis thaliana 0.34 FtsJ-like methyltransferase family protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT4G25760.1 Arabidopsis thaliana 0.50 glutamine dumper 2 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G25780.1 Arabidopsis thaliana 0.90 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G25790.1 Arabidopsis thaliana 0.51 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein SRR1260035:P-_hps7_R2 AT4G25810.1 Arabidopsis thaliana 0.75 xyloglucan endotransglycosylase 6 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G25950.1 Arabidopsis thaliana 0.49 vacuolar ATP synthase G3 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G26005.1 Arabidopsis thaliana 0.48 Unknown SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT4G26055.1 Arabidopsis thaliana 0.41 Unknown SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 AT4G26060.1 Arabidopsis thaliana 0.40 Ribosomal protein L18ae family SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G26095.1 Arabidopsis thaliana 0.65 other RNA SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G26180.1 Arabidopsis thaliana 0.40 Mitochondrial substrate carrier family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G26190.1 Arabidopsis thaliana 0.35 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT4G26200.1 Arabidopsis thaliana 0.49 1-amino-cyclopropane-1-carboxylate synthase 7 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G26260.1 Arabidopsis thaliana 0.86 myo-inositol oxygenase 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G26260.2 Arabidopsis thaliana 0.85 myo-inositol oxygenase 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G26330.1 Arabidopsis thaliana 0.73 Subtilisin-like serine endopeptidase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G26365.1 Arabidopsis thaliana 0.59 snoRNA SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G26400.1 Arabidopsis thaliana 0.41 RING/U-box superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G26400.2 Arabidopsis thaliana 0.60 RING/U-box superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G26460.1 Arabidopsis thaliana 0.55 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G26466.1 Arabidopsis thaliana 0.52 lorelei SRR1013918:responses to BL SRR1013919:responses to BL SRR1013921:responses to BL SRR1013922:responses to BL SRR1013923:responses to BL SRR1013925:responses to BL AT4G26483.1 Arabidopsis thaliana 0.32 nicotianamine synthases SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT4G26490.1 Arabidopsis thaliana 0.31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G26570.2 Arabidopsis thaliana 0.41 calcineurin B-like 3 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G26640.1 Arabidopsis thaliana 0.40 WRKY family transcription factor family protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G26650.1 Arabidopsis thaliana 0.48 RNA-binding (RRM/RBD/RNP motifs) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G26690.1 Arabidopsis thaliana 0.34 PLC-like phosphodiesterase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G26700.3 Arabidopsis thaliana 0.43 fimbrin 1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G26770.1 Arabidopsis thaliana 0.74 Phosphatidate cytidylyltransferase family protein SRR364677:GFP sample AT4G26800.1 Arabidopsis thaliana 0.41 Pentatricopeptide repeat (PPR) superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G26820.1 Arabidopsis thaliana 0.75 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G26840.1 Arabidopsis thaliana 0.41 small ubiquitin-like modifier 1 SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT4G26880.1 Arabidopsis thaliana 0.49 Stigma-specific Stig1 family protein SRR1260036:P+_hps7_R1 SRR1260037:P+_hps7_R2 SRR1260035:P-_hps7_R2 AT4G26930.1 Arabidopsis thaliana 0.78 myb domain protein 97 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G26940.1 Arabidopsis thaliana 0.45 Galactosyltransferase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G26965.2 Arabidopsis thaliana 0.49 NADH:ubiquinone oxidoreductase, 17.2kDa subunit SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G27020.1 Arabidopsis thaliana 0.61 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G27070.1 Arabidopsis thaliana 0.40 tryptophan synthase beta-subunit 2 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G27110.1 Arabidopsis thaliana 0.80 COBRA-like protein 11 precursor SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G27120.1 Arabidopsis thaliana 0.30 Unknown SRR307075:GSM756824: Ler x Col endosperm RNA-seq AT4G27260.1 Arabidopsis thaliana 0.42 Auxin-responsive GH3 family protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT4G27290.1 Arabidopsis thaliana 0.64 S-locus lectin protein kinase family protein SRR364677:GFP sample AT4G27310.1 Arabidopsis thaliana 0.31 B-box type zinc finger family protein SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR513741:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 1 SRR513742:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 1 AT4G27350.1 Arabidopsis thaliana 0.62 Protein of unknown function (DUF1223) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G27410.3 Arabidopsis thaliana 0.68 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein SRR1013918:responses to BL SRR1013919:responses to BL SRR1013921:responses to BL SRR1013922:responses to BL SRR1013923:responses to BL SRR1013925:responses to BL AT4G27460.1 Arabidopsis thaliana 0.43 Cystathionine beta-synthase (CBS) family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G27570.1 Arabidopsis thaliana 0.31 UDP-Glycosyltransferase superfamily protein SRR1046850:GSM1287115: Arabidopsis thaliana Ct-1 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046853:GSM1287118: Arabidopsis thaliana Edi-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G27580.1 Arabidopsis thaliana 0.93 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G27585.1 Arabidopsis thaliana 0.33 SPFH/Band 7/PHB domain-containing membrane-associated protein family ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G27590.1 Arabidopsis thaliana 0.36 Heavy metal transport/detoxification superfamily protein SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G27670.1 Arabidopsis thaliana 0.31 heat shock protein 21 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G27740.1 Arabidopsis thaliana 0.61 Yippee family putative zinc-binding protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G27765.1 Arabidopsis thaliana 0.65 MIR828a; miRNA SRR446031:Vir.1h.A AT4G27790.1 Arabidopsis thaliana 0.81 Calcium-binding EF hand family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G27840.1 Arabidopsis thaliana 0.43 SNARE-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G27860.1 Arabidopsis thaliana 0.34 vacuolar iron transporter (VIT) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G27880.1 Arabidopsis thaliana 0.83 Protein with RING/U-box and TRAF-like domains SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G27890.1 Arabidopsis thaliana 0.47 HSP20-like chaperones superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G28005.1 Arabidopsis thaliana 0.56 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G28025.2 Arabidopsis thaliana 0.34 Unknown SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT4G28040.4 Arabidopsis thaliana 0.36 nodulin MtN21 /EamA-like transporter family protein SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT4G28068.1 Arabidopsis thaliana 0.43 Unknown SRR515329:GSM951355: rve8_DEX_1; Arabidopsis thaliana; RNA-Seq AT4G28150.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF789) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G28170.1 Arabidopsis thaliana 0.44 Unknown SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT4G28181.1 Arabidopsis thaliana 0.81 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT4G28190.1 Arabidopsis thaliana 0.31 Developmental regulator, ULTRAPETALA SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT4G28280.2 Arabidopsis thaliana 0.89 LORELEI-LIKE-GPI ANCHORED PROTEIN 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G28290.1 Arabidopsis thaliana 0.33 Unknown SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT4G28397.2 Arabidopsis thaliana 0.71 Unknown SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT4G28420.2 Arabidopsis thaliana 0.34 Tyrosine transaminase family protein SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT4G28460.1 Arabidopsis thaliana 0.31 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G28490.1 Arabidopsis thaliana 0.69 Leucine-rich receptor-like protein kinase family protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT4G28500.1 Arabidopsis thaliana 0.38 NAC domain containing protein 73 SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G28520.4 Arabidopsis thaliana 0.38 cruciferin 3 ERR588042:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588045:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588049:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G28564.1 Arabidopsis thaliana 0.41 Unknown SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq AT4G28630.1 Arabidopsis thaliana 0.46 ABC transporter of the mitochondrion 1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G28640.1 Arabidopsis thaliana 0.36 indole-3-acetic acid inducible 11 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G28650.1 Arabidopsis thaliana 0.62 Leucine-rich repeat transmembrane protein kinase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G28703.1 Arabidopsis thaliana 0.33 RmlC-like cupins superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT4G28740.1 Arabidopsis thaliana 0.40 Unknown SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G28770.1 Arabidopsis thaliana 0.39 Tetraspanin family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G28775.1 Arabidopsis thaliana 0.42 Unknown SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G28811.1 Arabidopsis thaliana 0.54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G28840.1 Arabidopsis thaliana 0.65 Unknown SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT4G28870.1 Arabidopsis thaliana 0.31 Unknown SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G28890.1 Arabidopsis thaliana 0.45 RING/U-box superfamily protein SRR1046887:GSM1287152: Arabidopsis thaliana Wil-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G28915.1 Arabidopsis thaliana 0.83 pre-tRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT4G28920.1 Arabidopsis thaliana 0.43 Protein of unknown function (DUF626) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G28980.2 Arabidopsis thaliana 0.74 CDK-activating kinase 1AT ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G29010.1 Arabidopsis thaliana 0.73 Enoyl-CoA hydratase/isomerase family SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G29040.1 Arabidopsis thaliana 0.33 regulatory particle AAA-ATPase 2A SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G29060.2 Arabidopsis thaliana 0.35 elongation factor Ts family protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT4G29070.2 Arabidopsis thaliana 0.32 Phospholipase A2 family protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT4G29103.1 Arabidopsis thaliana 0.73 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G29140.1 Arabidopsis thaliana 0.47 MATE efflux family protein SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G29160.1 Arabidopsis thaliana 0.41 SNF7 family protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT4G29170.2 Arabidopsis thaliana 0.30 Mnd1 family protein SRR949989:early shade responses in Arabidopsis adult plants (Col, 4 hr sun) SRR949993:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT4G29180.2 Arabidopsis thaliana 0.75 root hair specific 16 SRR364677:GFP sample AT4G29210.1 Arabidopsis thaliana 0.33 gamma-glutamyl transpeptidase 4 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G29281.1 Arabidopsis thaliana 0.49 Unknown SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT4G29305.1 Arabidopsis thaliana 0.31 low-molecular-weight cysteine-rich 25 SRR1144845:be1-3 2 days on SIM AT4G29330.1 Arabidopsis thaliana 0.37 DERLIN-1 SRR1004829:tanorexia-1 Transcriptome Profiling E2 High-Light 30 minutes Replicate B AT4G29340.1 Arabidopsis thaliana 0.35 profilin 4 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G29370.1 Arabidopsis thaliana 0.75 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G29420.1 Arabidopsis thaliana 0.63 F-box/RNI-like superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G29460.1 Arabidopsis thaliana 0.89 Phospholipase A2 family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G29470.1 Arabidopsis thaliana 0.56 Phospholipase A2 family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G29580.1 Arabidopsis thaliana 0.36 Cytidine/deoxycytidylate deaminase family protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT4G29600.1 Arabidopsis thaliana 0.56 Cytidine/deoxycytidylate deaminase family protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT4G29610.1 Arabidopsis thaliana 0.34 Cytidine/deoxycytidylate deaminase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G29620.1 Arabidopsis thaliana 0.42 Cytidine/deoxycytidylate deaminase family protein SRR1058118:GSM1297920: at-seed-ler_wt_x_col_met 3; Arabidopsis thaliana; RNA-Seq AT4G29658.1 Arabidopsis thaliana 0.53 prenylated RAB acceptor 1.C SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G29735.2 Arabidopsis thaliana 0.86 Unknown SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT4G29780.1 Arabidopsis thaliana 0.31 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G29810.3 Arabidopsis thaliana 0.48 MAP kinase kinase 2 SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT4G29880.1 Arabidopsis thaliana 0.33 plant intracellular ras group-related LRR 7 SRR1046862:GSM1287127: Arabidopsis thaliana Ler-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G29900.1 Arabidopsis thaliana 0.46 autoinhibited Ca(2+)-ATPase 10 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G29930.4 Arabidopsis thaliana 0.34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT4G29940.2 Arabidopsis thaliana 0.32 pathogenesis related homeodomain protein A SRR513731:5dpi Pst(avrPphB) Col-0 mRNA-Seq, run 1, Bioreplicate 2 AT4G30060.1 Arabidopsis thaliana 0.35 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G30097.1 Arabidopsis thaliana 0.55 Unknown SRR1652317:atrtf2-2Ho AT4G30140.1 Arabidopsis thaliana 0.74 GDSL-like Lipase/Acylhydrolase superfamily protein SRR1144842:be1-3 7 days on CIM AT4G30160.1 Arabidopsis thaliana 0.50 villin 4 SRR364677:GFP sample AT4G30160.2 Arabidopsis thaliana 0.52 villin 4 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G30210.1 Arabidopsis thaliana 0.67 P450 reductase 2 SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR949956:early shade responses in Arabidopsis adult plants (Col, 1 hr sun) AT4G30210.2 Arabidopsis thaliana 0.54 P450 reductase 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G30230.1 Arabidopsis thaliana 0.32 Unknown SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G30260.1 Arabidopsis thaliana 0.40 Integral membrane Yip1 family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G30280.1 Arabidopsis thaliana 0.67 xyloglucan endotransglucosylase/hydrolase 18 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G30290.1 Arabidopsis thaliana 0.32 xyloglucan endotransglucosylase/hydrolase 19 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G30390.1 Arabidopsis thaliana 0.33 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G30410.1 Arabidopsis thaliana 0.30 sequence-specific DNA binding transcription factors ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G30430.1 Arabidopsis thaliana 0.64 tetraspanin9 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G30450.1 Arabidopsis thaliana 0.59 glycine-rich protein SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G30460.1 Arabidopsis thaliana 0.42 glycine-rich protein SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G30490.1 Arabidopsis thaliana 0.40 AFG1-like ATPase family protein SRR364678:nonGFP sample AT4G30510.2 Arabidopsis thaliana 0.48 homolog of yeast autophagy 18 (ATG18) B SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G30520.1 Arabidopsis thaliana 0.56 Leucine-rich repeat protein kinase family protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G30560.2 Arabidopsis thaliana 0.52 cyclic nucleotide gated channel 9 SRR364677:GFP sample AT4G30590.1 Arabidopsis thaliana 0.37 early nodulin-like protein 12 SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT4G30610.1 Arabidopsis thaliana 0.35 alpha/beta-Hydrolases superfamily protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT4G30770.1 Arabidopsis thaliana 0.55 Putative membrane lipoprotein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G30820.3 Arabidopsis thaliana 0.34 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related SRR068965:GSM607726: Col-WTxLer-WT_Embryo AT4G30850.1 Arabidopsis thaliana 0.43 heptahelical transmembrane protein2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G30860.1 Arabidopsis thaliana 0.55 SET domain group 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G30900.2 Arabidopsis thaliana 0.37 DNAse I-like superfamily protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT4G30972.1 Arabidopsis thaliana 0.60 MIR156B; miRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT4G31000.1 Arabidopsis thaliana 0.37 Calmodulin-binding protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G31000.2 Arabidopsis thaliana 0.41 Calmodulin-binding protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR1144842:be1-3 7 days on CIM AT4G31010.2 Arabidopsis thaliana 0.78 RNA-binding CRS1 / YhbY (CRM) domain-containing protein SRR1652317:atrtf2-2Ho AT4G31130.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF1218) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G31136.1 Arabidopsis thaliana 0.41 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas SRR364678:nonGFP sample AT4G31196.1 Arabidopsis thaliana 0.45 oxidoreductases SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT4G31230.1 Arabidopsis thaliana 0.55 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G31250.1 Arabidopsis thaliana 0.32 Leucine-rich repeat protein kinase family protein SRR364677:GFP sample AT4G31280.1 Arabidopsis thaliana 0.32 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G31290.1 Arabidopsis thaliana 0.61 ChaC-like family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G31300.1 Arabidopsis thaliana 0.34 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G31320.1 Arabidopsis thaliana 0.41 SAUR-like auxin-responsive protein family ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G31340.1 Arabidopsis thaliana 0.43 myosin heavy chain-related ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G31351.1 Arabidopsis thaliana 0.39 Unknown SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT4G31354.1 Arabidopsis thaliana 0.40 Unknown SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq AT4G31355.1 Arabidopsis thaliana 0.42 Unknown SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT4G31400.1 Arabidopsis thaliana 0.65 damaged DNA binding;DNA-directed DNA polymerases ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G31420.2 Arabidopsis thaliana 0.35 Zinc finger protein 622 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G31441.1 Arabidopsis thaliana 0.32 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT4G31450.1 Arabidopsis thaliana 0.42 RING/U-box superfamily protein SRR364677:GFP sample AT4G31470.1 Arabidopsis thaliana 0.63 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G31550.2 Arabidopsis thaliana 0.34 WRKY DNA-binding protein 11 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT4G31620.1 Arabidopsis thaliana 0.44 Transcriptional factor B3 family protein SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT4G31740.1 Arabidopsis thaliana 0.31 Sec1/munc18-like (SM) proteins superfamily SRR364677:GFP sample SRR364678:nonGFP sample SRR1598767:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT4G31780.2 Arabidopsis thaliana 0.33 monogalactosyl diacylglycerol synthase 1 SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT4G31800.1 Arabidopsis thaliana 0.68 WRKY DNA-binding protein 18 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G31800.2 Arabidopsis thaliana 0.41 WRKY DNA-binding protein 18 SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT4G31810.1 Arabidopsis thaliana 0.36 ATP-dependent caseinolytic (Clp) protease/crotonase family protein SRR1508458:GSM1429679: Col-0 replicate1; Arabidopsis thaliana; RNA-Seq SRR1508459:GSM1429680: Col-0 replicate2; Arabidopsis thaliana; RNA-Seq SRR1508460:GSM1429681: Col-0 replicate3; Arabidopsis thaliana; RNA-Seq SRR1508461:GSM1429682: coryne-3 replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508462:GSM1429683: coryne-3 replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508463:GSM1429684: clavata2-gabi replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508464:GSM1429685: clavata2-gabi replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508465:GSM1429686: clavata2-gabi replicate 3; Arabidopsis thaliana; RNA-Seq SRR1508466:GSM1429688: cle40-2 replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508467:GSM1429691: cle40-2 replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508468:GSM1429693: cle40-2 replicate 3; Arabidopsis thaliana; RNA-Seq AT4G31820.1 Arabidopsis thaliana 0.36 Phototropic-responsive NPH3 family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G31875.1 Arabidopsis thaliana 0.42 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G31900.1 Arabidopsis thaliana 0.52 chromatin remodeling factor, putative SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G31900.2 Arabidopsis thaliana 0.70 chromatin remodeling factor, putative SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G31920.1 Arabidopsis thaliana 0.46 response regulator 10 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G31940.1 Arabidopsis thaliana 0.49 cytochrome P450, family 82, subfamily C, polypeptide 4 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT4G31960.1 Arabidopsis thaliana 0.78 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G31970.1 Arabidopsis thaliana 0.56 cytochrome P450, family 82, subfamily C, polypeptide 2 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G31990.3 Arabidopsis thaliana 0.42 aspartate aminotransferase 5 SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G31990.4 Arabidopsis thaliana 0.34 aspartate aminotransferase 5 SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT4G32000.2 Arabidopsis thaliana 0.33 Protein kinase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G32030.2 Arabidopsis thaliana 0.32 Unknown SRR345564:GSM798298: mRNASeq_skip_rep2 AT4G32080.2 Arabidopsis thaliana 0.36 Unknown SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT4G32110.1 Arabidopsis thaliana 0.41 Beta-1,3-N-Acetylglucosaminyltransferase family protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT4G32175.1 Arabidopsis thaliana 0.44 PNAS-3 related SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G32180.1 Arabidopsis thaliana 0.32 pantothenate kinase 2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G32190.1 Arabidopsis thaliana 0.34 Myosin heavy chain-related protein ERR588045:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G32205.1 Arabidopsis thaliana 0.53 transposable element gene SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G32208.1 Arabidopsis thaliana 0.64 heat shock protein 70 (Hsp 70) family protein ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G32230.1 Arabidopsis thaliana 0.41 Unknown SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT4G32285.1 Arabidopsis thaliana 0.32 ENTH/ANTH/VHS superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G32290.1 Arabidopsis thaliana 0.31 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G32350.1 Arabidopsis thaliana 0.33 Regulator of Vps4 activity in the MVB pathway protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G32370.1 Arabidopsis thaliana 0.32 Pectin lyase-like superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G32378.1 Arabidopsis thaliana 0.56 Unknown SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq AT4G32440.1 Arabidopsis thaliana 0.58 Plant Tudor-like RNA-binding protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G32445.1 Arabidopsis thaliana 0.85 MIR419; miRNA SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq AT4G32480.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF506) SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT4G32510.1 Arabidopsis thaliana 0.91 HCO3- transporter family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G32530.1 Arabidopsis thaliana 0.32 ATPase, F0/V0 complex, subunit C protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G32530.2 Arabidopsis thaliana 0.49 ATPase, F0/V0 complex, subunit C protein SRR1652317:atrtf2-2Ho AT4G32590.1 Arabidopsis thaliana 0.39 2Fe-2S ferredoxin-like superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G32590.2 Arabidopsis thaliana 0.41 2Fe-2S ferredoxin-like superfamily protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518044:GSM954621: H2AZ_WT_3_RNA; Arabidopsis thaliana; RNA-Seq AT4G32590.3 Arabidopsis thaliana 0.30 2Fe-2S ferredoxin-like superfamily protein SRR609407:RNAseq data from loss of function mutant of BON1 in Ws AT4G32630.1 Arabidopsis thaliana 0.65 ArfGap/RecO-like zinc finger domain-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G32630.2 Arabidopsis thaliana 0.56 ArfGap/RecO-like zinc finger domain-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G32650.3 Arabidopsis thaliana 0.48 potassium channel in Arabidopsis thaliana 3 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT4G32660.3 Arabidopsis thaliana 0.32 Protein kinase superfamily protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G32690.1 Arabidopsis thaliana 0.42 hemoglobin 3 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT4G32717.1 Arabidopsis thaliana 0.55 SCR-like 24 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT4G32730.2 Arabidopsis thaliana 0.41 Homeodomain-like protein SRR1652315:prp8-7 AT4G32850.8 Arabidopsis thaliana 0.34 nuclear poly(a) polymerase SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT4G32860.1 Arabidopsis thaliana 0.44 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G32920.3 Arabidopsis thaliana 0.32 glycine-rich protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G32924.1 Arabidopsis thaliana 0.45 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G32950.1 Arabidopsis thaliana 0.38 Protein phosphatase 2C family protein SRR364677:GFP sample AT4G33000.2 Arabidopsis thaliana 0.31 calcineurin B-like protein 10 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G33040.1 Arabidopsis thaliana 0.40 Thioredoxin superfamily protein SRR847505:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847506:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G33050.3 Arabidopsis thaliana 0.46 calmodulin-binding family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G33060.1 Arabidopsis thaliana 0.30 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT4G33080.1 Arabidopsis thaliana 0.36 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G33080.2 Arabidopsis thaliana 0.48 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT4G33150.1 Arabidopsis thaliana 0.45 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT4G33230.1 Arabidopsis thaliana 0.79 Plant invertase/pectin methylesterase inhibitor superfamily SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G33260.2 Arabidopsis thaliana 0.39 Transducin family protein / WD-40 repeat family protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G33300.1 Arabidopsis thaliana 0.30 ADR1-like 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G33330.2 Arabidopsis thaliana 0.38 plant glycogenin-like starch initiation protein 3 SRR1039918:GSM1276505: ColxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G33355.2 Arabidopsis thaliana 0.38 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G33450.1 Arabidopsis thaliana 0.43 myb domain protein 69 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G33490.1 Arabidopsis thaliana 0.32 Eukaryotic aspartyl protease family protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT4G33530.1 Arabidopsis thaliana 0.32 K+ uptake permease 5 SRR364677:GFP sample AT4G33650.2 Arabidopsis thaliana 0.32 dynamin-related protein 3A ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G33666.1 Arabidopsis thaliana 0.44 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G33670.1 Arabidopsis thaliana 0.45 NAD(P)-linked oxidoreductase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G33690.1 Arabidopsis thaliana 0.35 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G33710.1 Arabidopsis thaliana 0.83 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G33720.1 Arabidopsis thaliana 0.48 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT4G33860.1 Arabidopsis thaliana 0.95 Glycosyl hydrolase family 10 protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G33930.1 Arabidopsis thaliana 0.62 Cupredoxin superfamily protein SRR364677:GFP sample SRR364678:nonGFP sample AT4G33970.1 Arabidopsis thaliana 0.93 Leucine-rich repeat (LRR) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G33980.2 Arabidopsis thaliana 0.48 Unknown SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT4G33985.1 Arabidopsis thaliana 0.36 Protein of unknown function (DUF1685) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT4G34065.1 Arabidopsis thaliana 0.54 Unknown SRR975545:S26 at 100mm 24hr AT4G34131.1 Arabidopsis thaliana 0.43 UDP-glucosyl transferase 73B3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G34138.1 Arabidopsis thaliana 0.46 UDP-glucosyl transferase 73B1 SRR501597:GSM938343: WT_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq AT4G34150.1 Arabidopsis thaliana 0.34 Calcium-dependent lipid-binding (CaLB domain) family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G34200.1 Arabidopsis thaliana 0.60 D-3-phosphoglycerate dehydrogenase SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G34230.2 Arabidopsis thaliana 0.86 cinnamyl alcohol dehydrogenase 5 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G34260.1 Arabidopsis thaliana 0.30 1,2-alpha-L-fucosidases ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G34272.1 Arabidopsis thaliana 0.30 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT4G34290.1 Arabidopsis thaliana 0.66 SWIB/MDM2 domain superfamily protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G34300.1 Arabidopsis thaliana 0.35 Cupredoxin superfamily protein SRR364677:GFP sample SRR364678:nonGFP sample AT4G34320.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF677) ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G34330.1 Arabidopsis thaliana 0.43 Protein of unknown function (DUF677) SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G34332.1 Arabidopsis thaliana 0.35 other RNA SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G34380.1 Arabidopsis thaliana 0.41 Transducin/WD40 repeat-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G34410.1 Arabidopsis thaliana 0.37 redox responsive transcription factor 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G34412.1 Arabidopsis thaliana 0.46 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G34415.1 Arabidopsis thaliana 0.31 pre-tRNA SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR499987:sig6 replicate 1 SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G34440.1 Arabidopsis thaliana 0.85 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G34530.1 Arabidopsis thaliana 0.33 cryptochrome-interacting basic-helix-loop-helix 1 SRR520239:GSM958259: WT-RNA-3; Arabidopsis thaliana; RNA-Seq AT4G34560.1 Arabidopsis thaliana 0.40 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G34580.1 Arabidopsis thaliana 0.85 Sec14p-like phosphatidylinositol transfer family protein SRR364677:GFP sample AT4G34660.1 Arabidopsis thaliana 0.33 SH3 domain-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G34680.1 Arabidopsis thaliana 0.57 GATA transcription factor 3 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G34680.2 Arabidopsis thaliana 0.38 GATA transcription factor 3 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G34710.1 Arabidopsis thaliana 0.34 arginine decarboxylase 2 SRR584119:GSM1017160: NMD_MOCK_R1; Arabidopsis thaliana; RNA-Seq AT4G34740.1 Arabidopsis thaliana 0.35 GLN phosphoribosyl pyrophosphate amidotransferase 2 SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT4G34750.1 Arabidopsis thaliana 0.73 SAUR-like auxin-responsive protein family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G34750.2 Arabidopsis thaliana 0.87 SAUR-like auxin-responsive protein family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G34780.1 Arabidopsis thaliana 0.34 SAUR-like auxin-responsive protein family SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G34870.1 Arabidopsis thaliana 0.35 rotamase cyclophilin 5 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G34880.1 Arabidopsis thaliana 0.54 Amidase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G34890.1 Arabidopsis thaliana 0.39 xanthine dehydrogenase 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G34910.1 Arabidopsis thaliana 0.33 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR944368:GSM1197430: Salt-3h_nonpolyA; Arabidopsis thaliana; RNA-Seq SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT4G35010.1 Arabidopsis thaliana 0.82 beta-galactosidase 11 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G35020.3 Arabidopsis thaliana 0.31 RAC-like 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G35080.1 Arabidopsis thaliana 0.30 high-affinity nickel-transport family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G35100.1 Arabidopsis thaliana 0.39 plasma membrane intrinsic protein 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G35140.1 Arabidopsis thaliana 0.32 Transducin/WD40 repeat-like superfamily protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq SRR364678:nonGFP sample AT4G35150.1 Arabidopsis thaliana 0.44 O-methyltransferase family protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT4G35160.1 Arabidopsis thaliana 0.37 O-methyltransferase family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT4G35180.1 Arabidopsis thaliana 0.74 LYS/HIS transporter 7 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G35190.1 Arabidopsis thaliana 0.33 Putative lysine decarboxylase family protein SRR1207200:GSM1359152: 35S:NGA 2; Arabidopsis thaliana; RNA-Seq AT4G35200.1 Arabidopsis thaliana 0.41 Arabidopsis protein of unknown function (DUF241) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G35210.1 Arabidopsis thaliana 0.61 Arabidopsis protein of unknown function (DUF241) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G35263.1 Arabidopsis thaliana 0.77 Unknown SRR1105822:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 AT4G35270.1 Arabidopsis thaliana 0.35 Plant regulator RWP-RK family protein SRR1061364:GSM1298732: L2_HiSeq; Arabidopsis thaliana; RNA-Seq SRR1061365:GSM1298733: L2_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT4G35295.1 Arabidopsis thaliana 0.59 homoserine kinase, putative / HSK, putative SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G35300.3 Arabidopsis thaliana 0.47 tonoplast monosaccharide transporter2 SRR1039918:GSM1276505: ColxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G35300.5 Arabidopsis thaliana 0.47 tonoplast monosaccharide transporter2 SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT4G35350.2 Arabidopsis thaliana 0.58 xylem cysteine peptidase 1 SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq AT4G35560.2 Arabidopsis thaliana 0.33 Transducin/WD40 repeat-like superfamily protein SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508247:GSM1428949: CvixLer_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G35580.3 Arabidopsis thaliana 0.32 NAC transcription factor-like 9 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT4G35590.1 Arabidopsis thaliana 0.50 RWP-RK domain-containing protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G35610.1 Arabidopsis thaliana 0.68 zinc finger (C2H2 type) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G35620.1 Arabidopsis thaliana 0.34 Cyclin B2;2 SRR1144843:WS 7 days on CIM AT4G35630.1 Arabidopsis thaliana 0.38 phosphoserine aminotransferase SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G35655.1 Arabidopsis thaliana 0.35 RPM1-interacting protein 4 (RIN4) family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G35660.1 Arabidopsis thaliana 0.88 Arabidopsis protein of unknown function (DUF241) ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G35700.1 Arabidopsis thaliana 0.70 zinc finger (C2H2 type) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G35725.1 Arabidopsis thaliana 0.45 Unknown SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT4G35733.1 Arabidopsis thaliana 0.46 F-box family protein with a domain of unknown function (DUF295) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G35785.4 Arabidopsis thaliana 0.32 RNA-binding (RRM/RBD/RNP motifs) family protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G35790.1 Arabidopsis thaliana 0.42 phospholipase D delta SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT4G35800.1 Arabidopsis thaliana 0.43 RNA polymerase II large subunit SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G35860.1 Arabidopsis thaliana 0.35 GTP-binding 2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G35900.1 Arabidopsis thaliana 0.59 Basic-leucine zipper (bZIP) transcription factor family protein ERR351333:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT4G35910.1 Arabidopsis thaliana 0.37 Adenine nucleotide alpha hydrolases-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G35920.3 Arabidopsis thaliana 0.37 PLAC8 family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G35940.1 Arabidopsis thaliana 0.32 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G35970.1 Arabidopsis thaliana 0.33 ascorbate peroxidase 5 SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G35987.1 Arabidopsis thaliana 0.32 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G36000.1 Arabidopsis thaliana 0.58 Pathogenesis-related thaumatin superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G36150.1 Arabidopsis thaliana 0.30 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT4G36195.2 Arabidopsis thaliana 0.33 Serine carboxypeptidase S28 family protein SRR609418:Wild type Wassilewskija RNAseq data AT4G36260.1 Arabidopsis thaliana 0.39 Lateral root primordium (LRP) protein-related SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT4G36268.1 Arabidopsis thaliana 0.52 Unknown SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A AT4G36270.1 Arabidopsis thaliana 0.33 ATP binding SRR314818:GSM764082: Can_0_floral_bud_validation_rep1 SRR1144843:WS 7 days on CIM AT4G36350.1 Arabidopsis thaliana 0.32 purple acid phosphatase 25 SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT4G36410.1 Arabidopsis thaliana 0.33 ubiquitin-conjugating enzyme 17 SRR907287:SAD1 dynamically regulates alternative splicing and stress tolerance AT4G36430.1 Arabidopsis thaliana 0.35 Peroxidase superfamily protein SRR1144845:be1-3 2 days on SIM AT4G36490.1 Arabidopsis thaliana 0.87 SEC14-like 12 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G36560.1 Arabidopsis thaliana 0.66 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT4G36570.1 Arabidopsis thaliana 0.52 RAD-like 3 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT4G36580.1 Arabidopsis thaliana 0.32 AAA-type ATPase family protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT4G36590.1 Arabidopsis thaliana 0.53 MADS-box transcription factor family protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT4G36600.1 Arabidopsis thaliana 0.59 Late embryogenesis abundant (LEA) protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT4G36650.1 Arabidopsis thaliana 0.38 plant-specific TFIIB-related protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G36740.1 Arabidopsis thaliana 0.49 homeobox protein 40 SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT4G36760.1 Arabidopsis thaliana 0.37 aminopeptidase P1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G36790.1 Arabidopsis thaliana 0.36 Major facilitator superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G36791.1 Arabidopsis thaliana 0.59 Unknown SRR1257397:GSM1371359: mock T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT4G36808.1 Arabidopsis thaliana 0.51 Unknown SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G36840.1 Arabidopsis thaliana 0.31 Galactose oxidase/kelch repeat superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G36880.1 Arabidopsis thaliana 0.34 cysteine proteinase1 SRR627629:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq SRR627630:GSM1047657: WT-RNA; Arabidopsis thaliana; RNA-Seq AT4G36900.1 Arabidopsis thaliana 0.42 related to AP2 10 SRR446044:Vir.12h.B AT4G36920.1 Arabidopsis thaliana 0.30 Integrase-type DNA-binding superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G36925.1 Arabidopsis thaliana 0.43 Unknown SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G36940.1 Arabidopsis thaliana 0.47 nicotinate phosphoribosyltransferase 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G36945.1 Arabidopsis thaliana 0.35 PLC-like phosphodiesterases superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G36950.1 Arabidopsis thaliana 0.59 mitogen-activated protein kinase kinase kinase 21 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G36980.2 Arabidopsis thaliana 0.39 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G37010.1 Arabidopsis thaliana 0.73 centrin 2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G37030.1 Arabidopsis thaliana 0.64 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G37040.1 Arabidopsis thaliana 0.34 methionine aminopeptidase 1D ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G37070.4 Arabidopsis thaliana 0.41 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT4G37095.1 Arabidopsis thaliana 0.39 Unknown SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq AT4G37160.1 Arabidopsis thaliana 0.61 SKU5 similar 15 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G37190.2 Arabidopsis thaliana 0.38 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G37200.1 Arabidopsis thaliana 0.34 Thioredoxin superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G37230.1 Arabidopsis thaliana 0.49 Photosystem II manganese-stabilising protein (PsbO) family ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G37235.1 Arabidopsis thaliana 0.45 Uncharacterised protein family (UPF0497) SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G37260.1 Arabidopsis thaliana 0.66 myb domain protein 73 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G37280.1 Arabidopsis thaliana 0.36 MRG family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G37290.1 Arabidopsis thaliana 0.41 Unknown SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G37295.1 Arabidopsis thaliana 0.62 Unknown SRR1144842:be1-3 7 days on CIM AT4G37320.1 Arabidopsis thaliana 0.35 cytochrome P450, family 81, subfamily D, polypeptide 5 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G37380.1 Arabidopsis thaliana 0.47 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT4G37400.1 Arabidopsis thaliana 0.33 cytochrome P450, family 81, subfamily F, polypeptide 3 SRR364677:GFP sample SRR364678:nonGFP sample AT4G37430.1 Arabidopsis thaliana 0.51 cytochrome P450, family 91, subfamily A, polypeptide 2 SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT4G37432.1 Arabidopsis thaliana 0.51 other RNA SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT4G37440.1 Arabidopsis thaliana 0.76 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G37450.1 Arabidopsis thaliana 0.42 arabinogalactan protein 18 SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT4G37483.1 Arabidopsis thaliana 0.36 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G37530.2 Arabidopsis thaliana 0.35 Peroxidase superfamily protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT4G37570.1 Arabidopsis thaliana 0.64 transposable element gene ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT4G37580.1 Arabidopsis thaliana 0.33 Acyl-CoA N-acyltransferases (NAT) superfamily protein SRR493286:ctr1-1 3-day etiolated seedlings in air, biological replicate 1 SRR493287:ctr1-1 3-day etiolated seedlings in air, biological replicate 2 SRR493288:ctr1-1 3-day etiolated seedlings in air, biological replicate 3 SRR493239:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 AT4G37608.1 Arabidopsis thaliana 0.34 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G37680.1 Arabidopsis thaliana 0.34 heptahelical protein 4 SRR934392:GSM1185650: Sample 2 (3794); Arabidopsis thaliana; RNA-Seq AT4G37690.1 Arabidopsis thaliana 0.36 Galactosyl transferase GMA12/MNN10 family protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G37720.1 Arabidopsis thaliana 0.43 phytosulfokine 6 precursor SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT4G37760.1 Arabidopsis thaliana 0.41 squalene epoxidase 3 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G37770.1 Arabidopsis thaliana 0.73 1-amino-cyclopropane-1-carboxylate synthase 8 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G37880.1 Arabidopsis thaliana 0.49 LisH/CRA/RING-U-box domains-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G37890.2 Arabidopsis thaliana 0.33 Zinc finger (C3HC4-type RING finger) family protein SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G37950.1 Arabidopsis thaliana 0.49 Rhamnogalacturonate lyase family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT4G38020.1 Arabidopsis thaliana 0.45 tRNA/rRNA methyltransferase (SpoU) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G38052.1 Arabidopsis thaliana 0.34 Unknown SRR926209:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 1 AT4G38060.2 Arabidopsis thaliana 0.30 Unknown SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT4G38090.3 Arabidopsis thaliana 0.32 Ribosomal protein S5 domain 2-like superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G38090.4 Arabidopsis thaliana 0.34 Ribosomal protein S5 domain 2-like superfamily protein SRR345563:GSM798297: mRNASeq_skip_rep1 SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT4G38092.1 Arabidopsis thaliana 0.45 Unknown SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT4G38140.1 Arabidopsis thaliana 0.49 RING/U-box superfamily protein SRR364677:GFP sample SRR364678:nonGFP sample ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G38150.1 Arabidopsis thaliana 0.32 Pentatricopeptide repeat (PPR) superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT4G38160.1 Arabidopsis thaliana 0.34 Mitochondrial transcription termination factor family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G38190.1 Arabidopsis thaliana 0.91 cellulose synthase like D4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G38200.1 Arabidopsis thaliana 0.43 SEC7-like guanine nucleotide exchange family protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT4G38210.1 Arabidopsis thaliana 0.37 expansin A20 SRR345564:GSM798298: mRNASeq_skip_rep2 AT4G38215.1 Arabidopsis thaliana 0.30 other RNA SRR345564:GSM798298: mRNASeq_skip_rep2 AT4G38220.2 Arabidopsis thaliana 0.46 Peptidase M20/M25/M40 family protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT4G38225.2 Arabidopsis thaliana 0.55 Unknown SRR1652317:atrtf2-2Ho AT4G38230.1 Arabidopsis thaliana 0.57 calcium-dependent protein kinase 26 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G38230.2 Arabidopsis thaliana 0.54 calcium-dependent protein kinase 26 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT4G38230.3 Arabidopsis thaliana 0.79 calcium-dependent protein kinase 26 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G38340.1 Arabidopsis thaliana 0.31 Plant regulator RWP-RK family protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G38360.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF300) SRR1508375:GSM1429457: Can-0-IP2; Arabidopsis thaliana; RNA-Seq SRR1508376:GSM1429457: Can-0-IP2; Arabidopsis thaliana; RNA-Seq AT4G38390.1 Arabidopsis thaliana 0.57 root hair specific 17 SRR364677:GFP sample AT4G38400.1 Arabidopsis thaliana 0.32 expansin-like A2 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G38401.1 Arabidopsis thaliana 0.35 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT4G38405.1 Arabidopsis thaliana 0.82 Unknown SRR364677:GFP sample AT4G38410.1 Arabidopsis thaliana 0.56 Dehydrin family protein SRR364678:nonGFP sample AT4G38420.1 Arabidopsis thaliana 0.35 SKU5 similar 9 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G38480.1 Arabidopsis thaliana 0.31 Transducin/WD40 repeat-like superfamily protein SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G38510.1 Arabidopsis thaliana 0.31 ATPase, V1 complex, subunit B protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G38620.1 Arabidopsis thaliana 0.32 myb domain protein 4 SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT4G38630.1 Arabidopsis thaliana 0.34 regulatory particle non-ATPase 10 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G38670.1 Arabidopsis thaliana 0.46 Pathogenesis-related thaumatin superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G38700.1 Arabidopsis thaliana 0.73 Disease resistance-responsive (dirigent-like protein) family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G38730.1 Arabidopsis thaliana 0.61 Protein of unknown function (DUF803) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G38770.1 Arabidopsis thaliana 0.51 proline-rich protein 4 SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G38780.1 Arabidopsis thaliana 0.34 Pre-mRNA-processing-splicing factor SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G38781.1 Arabidopsis thaliana 0.50 Unknown SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) SRR764886:GSM1088167: rdm16-2 RNA-seq; Arabidopsis thaliana; RNA-Seq AT4G38830.1 Arabidopsis thaliana 0.42 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G38900.1 Arabidopsis thaliana 0.37 Basic-leucine zipper (bZIP) transcription factor family protein SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT4G38930.1 Arabidopsis thaliana 0.34 Ubiquitin fusion degradation UFD1 family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G38960.1 Arabidopsis thaliana 0.57 B-box type zinc finger family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT4G38970.2 Arabidopsis thaliana 0.59 fructose-bisphosphate aldolase 2 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT4G39000.1 Arabidopsis thaliana 0.34 glycosyl hydrolase 9B17 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G39080.1 Arabidopsis thaliana 0.49 vacuolar proton ATPase A3 SRR364677:GFP sample AT4G39110.1 Arabidopsis thaliana 0.89 Malectin/receptor-like protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G39150.2 Arabidopsis thaliana 0.53 DNAJ heat shock N-terminal domain-containing protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G39180.1 Arabidopsis thaliana 0.54 Sec14p-like phosphatidylinositol transfer family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G39180.2 Arabidopsis thaliana 0.87 Sec14p-like phosphatidylinositol transfer family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G39235.1 Arabidopsis thaliana 0.37 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT4G39250.1 Arabidopsis thaliana 0.36 RAD-like 1 SRR988017:Arabidopsis RNA-Seq for wild type seedlings grown under elevated CO2 AT4G39280.2 Arabidopsis thaliana 0.34 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative SRR392127:GSM852817: mRNA-seq in flc, technical replicate 2; Arabidopsis thaliana; RNA-Seq SRR392133:GSM852823: mRNA-seq in fcl, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT4G39360.1 Arabidopsis thaliana 0.47 Unknown SRR364677:GFP sample AT4G39361.1 Arabidopsis thaliana 0.59 snoRNA SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G39364.1 Arabidopsis thaliana 0.66 snoRNA SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT4G39366.1 Arabidopsis thaliana 0.58 snoRNA SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT4G39370.2 Arabidopsis thaliana 0.84 ubiquitin-specific protease 27 SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT4G39380.1 Arabidopsis thaliana 0.56 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G39520.1 Arabidopsis thaliana 0.50 GTP-binding protein-related SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A AT4G39560.1 Arabidopsis thaliana 0.44 Galactose oxidase/kelch repeat superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G39570.1 Arabidopsis thaliana 0.36 Galactose oxidase/kelch repeat superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT4G39590.1 Arabidopsis thaliana 0.48 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G39610.1 Arabidopsis thaliana 0.89 Protein of unknown function, DUF617 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G39640.2 Arabidopsis thaliana 0.32 gamma-glutamyl transpeptidase 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT4G39650.1 Arabidopsis thaliana 0.47 gamma-glutamyl transpeptidase 2 SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT4G39720.1 Arabidopsis thaliana 0.36 VQ motif-containing protein SRR1144845:be1-3 2 days on SIM AT4G39740.1 Arabidopsis thaliana 0.31 Thioredoxin superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT4G39753.1 Arabidopsis thaliana 0.58 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT4G39756.1 Arabidopsis thaliana 0.63 Galactose oxidase/kelch repeat superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT4G39770.1 Arabidopsis thaliana 0.40 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT4G39870.2 Arabidopsis thaliana 0.90 TLD-domain containing nucleolar protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT4G39917.1 Arabidopsis thaliana 0.36 low-molecular-weight cysteine-rich 45 SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT4G39930.2 Arabidopsis thaliana 0.36 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT4G39950.1 Arabidopsis thaliana 0.37 cytochrome P450, family 79, subfamily B, polypeptide 2 SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT4G39986.1 Arabidopsis thaliana 0.68 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT4G39990.1 Arabidopsis thaliana 0.54 RAB GTPase homolog A4B ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT4G40030.2 Arabidopsis thaliana 0.34 Histone superfamily protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT4G40030.3 Arabidopsis thaliana 0.35 Histone superfamily protein SRR907287:SAD1 dynamically regulates alternative splicing and stress tolerance AT4G40070.1 Arabidopsis thaliana 0.37 RING/U-box superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT4G40080.1 Arabidopsis thaliana 0.38 ENTH/ANTH/VHS superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G01050.1 Arabidopsis thaliana 0.40 Laccase/Diphenol oxidase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample AT5G01180.1 Arabidopsis thaliana 0.32 peptide transporter 5 SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT5G01190.1 Arabidopsis thaliana 0.35 laccase 10 SRR1548688:GSM1477533: lsm4 rep 1,1; Arabidopsis thaliana; RNA-Seq SRR1548689:GSM1477534: lsm4 rep 1,2; Arabidopsis thaliana; RNA-Seq SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq SRR1548692:GSM1477537: lsm4 rep 3,1; Arabidopsis thaliana; RNA-Seq SRR1548693:GSM1477538: lsm4 rep 3,2; Arabidopsis thaliana; RNA-Seq AT5G01280.1 Arabidopsis thaliana 0.75 Unknown SRR364677:GFP sample AT5G01290.1 Arabidopsis thaliana 0.32 mRNA capping enzyme family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT5G01300.2 Arabidopsis thaliana 0.30 PEBP (phosphatidylethanolamine-binding protein) family protein ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G01320.1 Arabidopsis thaliana 0.68 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G01330.1 Arabidopsis thaliana 0.67 pyruvate decarboxylase-3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G01335.1 Arabidopsis thaliana 0.46 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT5G01360.1 Arabidopsis thaliana 0.46 Plant protein of unknown function (DUF828) SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq AT5G01390.1 Arabidopsis thaliana 0.44 DNAJ heat shock family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G01420.1 Arabidopsis thaliana 0.41 Glutaredoxin family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G01520.1 Arabidopsis thaliana 0.55 RING/U-box superfamily protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G01530.1 Arabidopsis thaliana 0.36 light harvesting complex photosystem II ERR229831:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G01540.1 Arabidopsis thaliana 0.73 lectin receptor kinase a4.1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G01560.1 Arabidopsis thaliana 0.65 lectin receptor kinase a4.3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G01580.1 Arabidopsis thaliana 0.49 gamma interferon responsive lysosomal thiol (GILT) reductase family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G01610.1 Arabidopsis thaliana 0.62 Protein of unknown function, DUF538 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G01640.1 Arabidopsis thaliana 0.31 prenylated RAB acceptor 1.B5 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G01700.2 Arabidopsis thaliana 0.34 Protein phosphatase 2C family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G01715.1 Arabidopsis thaliana 0.56 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G01730.1 Arabidopsis thaliana 0.57 SCAR family protein 4 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G01732.1 Arabidopsis thaliana 0.64 other RNA SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G01734.1 Arabidopsis thaliana 0.58 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G01740.1 Arabidopsis thaliana 0.40 Nuclear transport factor 2 (NTF2) family protein SRR584119:GSM1017160: NMD_MOCK_R1; Arabidopsis thaliana; RNA-Seq AT5G01747.1 Arabidopsis thaliana 0.31 MIR164/MIR164B; miRNA SRR1046938:GSM1287196: Ws-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT5G01750.1 Arabidopsis thaliana 0.58 Protein of unknown function (DUF567) SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT5G01760.1 Arabidopsis thaliana 0.50 ENTH/VHS/GAT family protein SRR364677:GFP sample AT5G01780.2 Arabidopsis thaliana 0.34 2-oxoglutarate-dependent dioxygenase family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G01810.1 Arabidopsis thaliana 0.40 CBL-interacting protein kinase 15 SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT5G01830.1 Arabidopsis thaliana 0.33 ARM repeat superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT5G01870.1 Arabidopsis thaliana 0.46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1144843:WS 7 days on CIM AT5G01980.1 Arabidopsis thaliana 0.39 RING/U-box superfamily protein SRR446035:Avr.6h.A AT5G02021.1 Arabidopsis thaliana 1.00 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G02025.1 Arabidopsis thaliana 0.57 pre-tRNA SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G02090.1 Arabidopsis thaliana 0.31 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G02110.1 Arabidopsis thaliana 0.74 CYCLIN D7;1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G02130.1 Arabidopsis thaliana 0.36 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1046885:GSM1287150: Arabidopsis thaliana Tsu-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G02140.1 Arabidopsis thaliana 0.31 Pathogenesis-related thaumatin superfamily protein SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G02200.2 Arabidopsis thaliana 0.31 far-red-elongated hypocotyl1-like SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G02210.1 Arabidopsis thaliana 0.66 GCK domain-containing protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G02220.1 Arabidopsis thaliana 0.57 Unknown SRR345563:GSM798297: mRNASeq_skip_rep1 AT5G02244.1 Arabidopsis thaliana 0.55 Unknown SRR1652316:atrtf2-2He SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G02260.1 Arabidopsis thaliana 0.50 expansin A9 SRR364678:nonGFP sample AT5G02270.1 Arabidopsis thaliana 0.41 non-intrinsic ABC protein 9 SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G02290.2 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G02350.1 Arabidopsis thaliana 0.34 Cysteine/Histidine-rich C1 domain family protein SRR364677:GFP sample AT5G02370.1 Arabidopsis thaliana 0.54 ATP binding microtubule motor family protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT5G02380.1 Arabidopsis thaliana 0.41 metallothionein 2B ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT5G02390.1 Arabidopsis thaliana 0.33 Protein of unknown function (DUF3741) SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G02400.1 Arabidopsis thaliana 0.34 pol-like 2 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G02420.1 Arabidopsis thaliana 0.35 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G02430.1 Arabidopsis thaliana 0.37 Transducin/WD40 repeat-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G02550.1 Arabidopsis thaliana 0.55 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G02570.1 Arabidopsis thaliana 0.77 Histone superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G03020.1 Arabidopsis thaliana 0.54 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G03030.1 Arabidopsis thaliana 0.50 Chaperone DnaJ-domain superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G03080.1 Arabidopsis thaliana 0.36 Phosphatidic acid phosphatase (PAP2) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G03170.1 Arabidopsis thaliana 0.47 FASCICLIN-like arabinogalactan-protein 11 SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G03240.2 Arabidopsis thaliana 0.30 polyubiquitin 3 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G03270.1 Arabidopsis thaliana 0.56 lysine decarboxylase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G03280.1 Arabidopsis thaliana 0.55 NRAMP metal ion transporter family protein SRR493289:ein2 S645A 3-day etiolated seedlings in air, biological replicate 1 SRR493290:ein2 S645A 3-day etiolated seedlings in air, biological replicate 2 AT5G03300.1 Arabidopsis thaliana 0.36 adenosine kinase 2 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G03330.2 Arabidopsis thaliana 0.39 Cysteine proteinases superfamily protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G03360.2 Arabidopsis thaliana 0.48 DC1 domain-containing protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G03380.1 Arabidopsis thaliana 0.57 Heavy metal transport/detoxification superfamily protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT5G03380.2 Arabidopsis thaliana 0.46 Heavy metal transport/detoxification superfamily protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT5G03540.1 Arabidopsis thaliana 0.34 exocyst subunit exo70 family protein A1 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G03540.2 Arabidopsis thaliana 0.45 exocyst subunit exo70 family protein A1 SRR1652317:atrtf2-2Ho AT5G03570.2 Arabidopsis thaliana 0.35 iron regulated 2 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G03610.1 Arabidopsis thaliana 0.38 GDSL-like Lipase/Acylhydrolase superfamily protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G03660.2 Arabidopsis thaliana 0.39 Family of unknown function (DUF662) SRR944368:GSM1197430: Salt-3h_nonpolyA; Arabidopsis thaliana; RNA-Seq SRR944365:GSM1197427: Cold-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT5G03680.1 Arabidopsis thaliana 0.48 Duplicated homeodomain-like superfamily protein SRR1144845:be1-3 2 days on SIM AT5G03690.2 Arabidopsis thaliana 0.62 Aldolase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G03710.1 Arabidopsis thaliana 0.60 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq AT5G03720.1 Arabidopsis thaliana 0.31 heat shock transcription factor A3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G03760.1 Arabidopsis thaliana 0.64 Nucleotide-diphospho-sugar transferases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G03775.1 Arabidopsis thaliana 0.56 pre-tRNA SRR499987:sig6 replicate 1 AT5G03810.1 Arabidopsis thaliana 0.45 GDSL-like Lipase/Acylhydrolase family protein SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT5G03837.1 Arabidopsis thaliana 0.92 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G03840.1 Arabidopsis thaliana 0.78 PEBP (phosphatidylethanolamine-binding protein) family protein ERR351333:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT5G03860.2 Arabidopsis thaliana 0.43 malate synthase SRR345563:GSM798297: mRNASeq_skip_rep1 AT5G03905.1 Arabidopsis thaliana 0.58 Iron-sulphur cluster biosynthesis family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G03930.1 Arabidopsis thaliana 0.30 Unknown SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G03944.1 Arabidopsis thaliana 0.35 Unknown SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT5G03990.1 Arabidopsis thaliana 0.47 Unknown SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G04010.1 Arabidopsis thaliana 0.37 F-box family protein SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq AT5G04070.1 Arabidopsis thaliana 0.46 NAD(P)-binding Rossmann-fold superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G04080.3 Arabidopsis thaliana 0.45 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G04150.1 Arabidopsis thaliana 0.78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1652315:prp8-7 AT5G04180.1 Arabidopsis thaliana 0.90 alpha carbonic anhydrase 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G04200.1 Arabidopsis thaliana 0.31 metacaspase 9 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G04230.1 Arabidopsis thaliana 0.40 phenyl alanine ammonia-lyase 3 SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT5G04230.2 Arabidopsis thaliana 0.32 phenyl alanine ammonia-lyase 3 SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT5G04250.1 Arabidopsis thaliana 0.35 Cysteine proteinases superfamily protein SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT5G04250.2 Arabidopsis thaliana 0.50 Cysteine proteinases superfamily protein SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT5G04267.1 Arabidopsis thaliana 0.45 Unknown SRR364678:nonGFP sample AT5G04275.1 Arabidopsis thaliana 0.79 MIR172/MIR172B; miRNA SRR969418:Wild type at 0mm 1hr AT5G04386.1 Arabidopsis thaliana 0.58 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G04390.1 Arabidopsis thaliana 0.33 C2H2-type zinc finger family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G04420.3 Arabidopsis thaliana 0.31 Galactose oxidase/kelch repeat superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G04430.2 Arabidopsis thaliana 0.47 binding to TOMV RNA 1L (long form) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G04440.1 Arabidopsis thaliana 0.39 Protein of unknown function (DUF1997) SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G04480.2 Arabidopsis thaliana 0.46 UDP-Glycosyltransferase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G04510.1 Arabidopsis thaliana 0.30 3'-phosphoinositide-dependent protein kinase 1 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G04600.1 Arabidopsis thaliana 0.54 RNA-binding (RRM/RBD/RNP motifs) family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G04610.1 Arabidopsis thaliana 0.41 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G04720.1 Arabidopsis thaliana 0.54 ADR1-like 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G04730.1 Arabidopsis thaliana 0.56 Ankyrin-repeat containing protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G04800.4 Arabidopsis thaliana 0.77 Ribosomal S17 family protein SRR446030:Avr.1h.B AT5G04820.1 Arabidopsis thaliana 0.60 ovate family protein 13 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G04850.1 Arabidopsis thaliana 0.30 SNF7 family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G04853.1 Arabidopsis thaliana 0.72 Unknown SRR446029:Avr 1h A Sample A AT5G04940.1 Arabidopsis thaliana 0.78 SU(VAR)3-9 homolog 1 SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G04970.1 Arabidopsis thaliana 0.58 Plant invertase/pectin methylesterase inhibitor superfamily ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G05020.1 Arabidopsis thaliana 0.40 Pollen Ole e 1 allergen and extensin family protein SRR1105590:GSM1303963: CL37_7-8_B; Arabidopsis thaliana; RNA-Seq AT5G05025.1 Arabidopsis thaliana 0.33 Unknown SRR1105599:GSM1303972: PDAT_7-8_B; Arabidopsis thaliana; RNA-Seq AT5G05070.1 Arabidopsis thaliana 0.88 DHHC-type zinc finger family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G05113.1 Arabidopsis thaliana 0.59 Unknown SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G05120.1 Arabidopsis thaliana 0.54 C2H2 and C2HC zinc fingers superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G05160.1 Arabidopsis thaliana 0.38 Leucine-rich repeat protein kinase family protein SRR1144842:be1-3 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT5G05260.1 Arabidopsis thaliana 0.41 cytochrome p450 79a2 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G05330.2 Arabidopsis thaliana 0.59 HMG-box (high mobility group) DNA-binding family protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT5G05340.1 Arabidopsis thaliana 0.34 Peroxidase superfamily protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G05380.1 Arabidopsis thaliana 0.32 prenylated RAB acceptor 1.B3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G05390.1 Arabidopsis thaliana 0.56 laccase 12 SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G05410.1 Arabidopsis thaliana 0.56 DRE-binding protein 2A ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G05450.1 Arabidopsis thaliana 0.33 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT5G05470.1 Arabidopsis thaliana 0.32 eukaryotic translation initiation factor 2 alpha subunit SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G05630.1 Arabidopsis thaliana 0.33 Amino acid permease family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G05690.2 Arabidopsis thaliana 0.48 Cytochrome P450 superfamily protein SRR609416:RNAseq data from activation tagging mutant of OSD1 in bon1-2 AT5G05730.1 Arabidopsis thaliana 0.51 anthranilate synthase alpha subunit 1 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G05730.2 Arabidopsis thaliana 0.37 anthranilate synthase alpha subunit 1 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq AT5G05770.1 Arabidopsis thaliana 0.81 WUSCHEL related homeobox 7 SRR1144842:be1-3 7 days on CIM AT5G05820.1 Arabidopsis thaliana 0.41 Nucleotide-sugar transporter family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G05900.1 Arabidopsis thaliana 0.64 UDP-Glycosyltransferase superfamily protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G05930.2 Arabidopsis thaliana 0.63 guanylyl cyclase 1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G06060.1 Arabidopsis thaliana 0.37 NAD(P)-binding Rossmann-fold superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G06070.1 Arabidopsis thaliana 0.59 C2H2 and C2HC zinc fingers superfamily protein SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT5G06090.1 Arabidopsis thaliana 0.39 glycerol-3-phosphate acyltransferase 7 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G06100.1 Arabidopsis thaliana 0.35 myb domain protein 33 SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq AT5G06120.2 Arabidopsis thaliana 0.49 ARM repeat superfamily protein SRR307069:GSM756822: Col x Ler endosperm RNA-seq AT5G06165.1 Arabidopsis thaliana 0.34 Unknown SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq AT5G06190.2 Arabidopsis thaliana 0.59 Unknown SRR345563:GSM798297: mRNASeq_skip_rep1 AT5G06240.1 Arabidopsis thaliana 0.45 embryo defective 2735 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G06250.2 Arabidopsis thaliana 0.53 AP2/B3-like transcriptional factor family protein SRR345564:GSM798298: mRNASeq_skip_rep2 AT5G06270.1 Arabidopsis thaliana 0.40 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G06310.1 Arabidopsis thaliana 0.39 Nucleic acid-binding, OB-fold-like protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G06380.1 Arabidopsis thaliana 0.48 Unknown SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G06410.1 Arabidopsis thaliana 0.33 DNAJ heat shock N-terminal domain-containing protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G06490.1 Arabidopsis thaliana 0.49 RING/U-box superfamily protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G06510.1 Arabidopsis thaliana 0.36 nuclear factor Y, subunit A10 SRR1061364:GSM1298732: L2_HiSeq; Arabidopsis thaliana; RNA-Seq SRR1061365:GSM1298733: L2_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT5G06520.1 Arabidopsis thaliana 0.81 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G06570.1 Arabidopsis thaliana 0.61 alpha/beta-Hydrolases superfamily protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G06570.2 Arabidopsis thaliana 0.31 alpha/beta-Hydrolases superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G06640.1 Arabidopsis thaliana 0.40 Proline-rich extensin-like family protein SRR1260035:P-_hps7_R2 AT5G06710.2 Arabidopsis thaliana 0.70 homeobox from Arabidopsis thaliana ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G06730.1 Arabidopsis thaliana 0.30 Peroxidase superfamily protein SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT5G06790.1 Arabidopsis thaliana 0.32 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G06865.1 Arabidopsis thaliana 0.37 other RNA SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR364678:nonGFP sample AT5G06865.2 Arabidopsis thaliana 0.55 other RNA ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G06890.1 Arabidopsis thaliana 0.60 Ubiquitin-like superfamily protein SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G06960.2 Arabidopsis thaliana 0.36 OCS-element binding factor 5 SRR513730:5dpi Pst(avrPphB) Col-0 mRNA-Seq, run 2, Bioreplicate 1 AT5G07040.1 Arabidopsis thaliana 0.50 RING/U-box superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G07120.1 Arabidopsis thaliana 0.37 sorting nexin 2B SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G07190.2 Arabidopsis thaliana 0.30 seed gene 3 ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G07220.1 Arabidopsis thaliana 0.49 BCL-2-associated athanogene 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G07260.2 Arabidopsis thaliana 0.35 START (StAR-related lipid-transfer) lipid-binding domain SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G07310.1 Arabidopsis thaliana 0.44 Integrase-type DNA-binding superfamily protein SRR1144842:be1-3 7 days on CIM AT5G07320.1 Arabidopsis thaliana 0.43 Mitochondrial substrate carrier family protein SRR364678:nonGFP sample AT5G07330.1 Arabidopsis thaliana 0.31 Unknown ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G07410.1 Arabidopsis thaliana 0.80 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G07420.1 Arabidopsis thaliana 0.55 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G07430.1 Arabidopsis thaliana 0.95 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G07450.1 Arabidopsis thaliana 0.75 cyclin p4;3 SRR364677:GFP sample AT5G07475.1 Arabidopsis thaliana 0.36 Cupredoxin superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G07510.1 Arabidopsis thaliana 0.52 glycine-rich protein 14 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT5G07510.3 Arabidopsis thaliana 0.55 glycine-rich protein 14 SRR479032:GSM913710: Col_floral_mRNA; Arabidopsis thaliana; RNA-Seq AT5G07530.1 Arabidopsis thaliana 0.39 glycine rich protein 17 DRR008476: DRR008478:Arabidopsis ibm2-2 mRNA_seq AT5G07540.1 Arabidopsis thaliana 0.31 glycine-rich protein 16 DRR008476: DRR008478:Arabidopsis ibm2-2 mRNA_seq AT5G07550.2 Arabidopsis thaliana 0.43 glycine-rich protein 19 SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G07550.3 Arabidopsis thaliana 0.42 glycine-rich protein 19 SRR1521947:GSM1441333: wt1; Arabidopsis thaliana; RNA-Seq AT5G07570.1 Arabidopsis thaliana 0.80 glycine/proline-rich protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G07572.1 Arabidopsis thaliana 0.54 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G07660.1 Arabidopsis thaliana 0.52 structural maintenance of chromosomes 6A SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G07680.2 Arabidopsis thaliana 0.44 NAC domain containing protein 80 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT5G07720.1 Arabidopsis thaliana 0.31 Galactosyl transferase GMA12/MNN10 family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G07730.1 Arabidopsis thaliana 0.31 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G07760.1 Arabidopsis thaliana 0.49 formin homology 2 domain-containing protein / FH2 domain-containing protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G07860.1 Arabidopsis thaliana 0.60 HXXXD-type acyl-transferase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G07870.1 Arabidopsis thaliana 0.35 HXXXD-type acyl-transferase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G07890.3 Arabidopsis thaliana 0.41 myosin heavy chain-related SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G08020.1 Arabidopsis thaliana 0.37 RPA70-kDa subunit B ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G08070.1 Arabidopsis thaliana 0.39 TCP domain protein 17 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G08075.1 Arabidopsis thaliana 1.00 pre-tRNA SRR520247:GSM958267: pifq-RNA-2; Arabidopsis thaliana; RNA-Seq AT5G08080.1 Arabidopsis thaliana 0.34 syntaxin of plants 132 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G08080.2 Arabidopsis thaliana 0.67 syntaxin of plants 132 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G08100.2 Arabidopsis thaliana 0.41 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G08141.1 Arabidopsis thaliana 0.32 basic leucine-zipper 75 SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA AT5G08150.1 Arabidopsis thaliana 0.42 suppressor of phytochrome b 5 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G08185.2 Arabidopsis thaliana 0.55 microRNA162A ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G08310.1 Arabidopsis thaliana 0.51 Tetratricopeptide repeat (TPR)-like superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G08315.1 Arabidopsis thaliana 0.37 Defensin-like (DEFL) family protein SRR1046892:GSM1287157: Arabidopsis thaliana Wu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G08340.1 Arabidopsis thaliana 0.73 Nucleotidylyl transferase superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G08370.1 Arabidopsis thaliana 0.58 alpha-galactosidase 2 SRR826412:Sample Control BR5 AT5G08470.1 Arabidopsis thaliana 0.39 peroxisome 1 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G08535.1 Arabidopsis thaliana 0.41 D111/G-patch domain-containing protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G08710.1 Arabidopsis thaliana 0.50 Regulator of chromosome condensation (RCC1) family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G08712.1 Arabidopsis thaliana 0.70 MIR166/MIR166C; miRNA SRR1179998:GSM1337746: Arabidopsis thaliana Wu-0 X Rsch-4 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1179999:GSM1337746: Arabidopsis thaliana Wu-0 X Rsch-4 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G08717.1 Arabidopsis thaliana 0.54 MIR166/MIR166D; miRNA SRR609416:RNAseq data from activation tagging mutant of OSD1 in bon1-2 AT5G08730.1 Arabidopsis thaliana 0.37 IBR domain-containing protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G08780.1 Arabidopsis thaliana 0.36 winged-helix DNA-binding transcription factor family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G09230.6 Arabidopsis thaliana 0.39 sirtuin 2 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G09230.7 Arabidopsis thaliana 0.47 sirtuin 2 SRR307075:GSM756824: Ler x Col endosperm RNA-seq AT5G09240.3 Arabidopsis thaliana 0.48 ssDNA-binding transcriptional regulator SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G09330.1 Arabidopsis thaliana 0.40 NAC domain containing protein 82 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G09345.1 Arabidopsis thaliana 0.62 pre-tRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT5G09390.2 Arabidopsis thaliana 0.32 CD2-binding protein-related SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT5G09410.3 Arabidopsis thaliana 0.44 ethylene induced calmodulin binding protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G09430.1 Arabidopsis thaliana 0.85 alpha/beta-Hydrolases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G09450.1 Arabidopsis thaliana 0.42 Tetratricopeptide repeat (TPR)-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G09490.1 Arabidopsis thaliana 0.81 Ribosomal protein S19 family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G09570.1 Arabidopsis thaliana 0.51 Cox19-like CHCH family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G09580.1 Arabidopsis thaliana 0.39 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G09585.1 Arabidopsis thaliana 0.52 U2.5; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G09590.1 Arabidopsis thaliana 0.40 mitochondrial HSO70 2 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G09600.2 Arabidopsis thaliana 0.71 succinate dehydrogenase 3-1 SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT5G09660.2 Arabidopsis thaliana 0.50 peroxisomal NAD-malate dehydrogenase 2 ERR229858:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G09690.4 Arabidopsis thaliana 0.38 magnesium transporter 7 SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G09710.1 Arabidopsis thaliana 0.61 Magnesium transporter CorA-like family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G09820.1 Arabidopsis thaliana 0.34 Plastid-lipid associated protein PAP / fibrillin family protein SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G09876.1 Arabidopsis thaliana 0.78 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G09890.1 Arabidopsis thaliana 0.55 Protein kinase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G09900.3 Arabidopsis thaliana 0.71 26S proteasome regulatory subunit, putative (RPN5) SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G09910.1 Arabidopsis thaliana 0.75 Ras-related small GTP-binding family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G09976.1 Arabidopsis thaliana 0.50 Unknown SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G09980.1 Arabidopsis thaliana 0.34 elicitor peptide 4 precursor SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G09990.1 Arabidopsis thaliana 0.34 elicitor peptide 5 precursor ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT5G09995.3 Arabidopsis thaliana 0.55 Unknown SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G10040.1 Arabidopsis thaliana 0.55 Unknown SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT5G10050.1 Arabidopsis thaliana 0.36 NAD(P)-binding Rossmann-fold superfamily protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT5G10070.2 Arabidopsis thaliana 0.44 RNase L inhibitor protein-related SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G10090.1 Arabidopsis thaliana 0.64 Tetratricopeptide repeat (TPR)-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G10100.2 Arabidopsis thaliana 0.47 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR931760: AT5G10130.1 Arabidopsis thaliana 0.63 Pollen Ole e 1 allergen and extensin family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G10140.2 Arabidopsis thaliana 0.30 K-box region and MADS-box transcription factor family protein SRR1046848:GSM1287113: Arabidopsis thaliana Bur-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046906:GSM1287164: Bur-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR1046849:GSM1287114: Arabidopsis thaliana Bur-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT5G10180.1 Arabidopsis thaliana 0.45 slufate transporter 2;1 SRR826412:Sample Control BR5 AT5G10260.1 Arabidopsis thaliana 0.47 RAB GTPase homolog H1E ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G10278.1 Arabidopsis thaliana 0.31 other RNA SRR1144844:WS 2 days on SIM AT5G10330.1 Arabidopsis thaliana 0.30 histidinol phosphate aminotransferase 1 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G10336.1 Arabidopsis thaliana 0.40 Unknown SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G10340.1 Arabidopsis thaliana 0.38 F-box family protein SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G10390.1 Arabidopsis thaliana 0.46 Histone superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G10440.1 Arabidopsis thaliana 0.36 cyclin d4;2 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G10450.3 Arabidopsis thaliana 0.47 G-box regulating factor 6 SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other SRR609269:GSM1025549: mos2-2 rep1; Arabidopsis thaliana; RNA-Seq SRR609270:GSM1025550: mos2-2 rep2; Arabidopsis thaliana; RNA-Seq AT5G10504.1 Arabidopsis thaliana 0.44 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT5G10510.1 Arabidopsis thaliana 0.31 AINTEGUMENTA-like 6 SRR1144843:WS 7 days on CIM AT5G10510.3 Arabidopsis thaliana 0.43 AINTEGUMENTA-like 6 SRR1144843:WS 7 days on CIM AT5G10600.1 Arabidopsis thaliana 0.47 cytochrome P450, family 81, subfamily K, polypeptide 2 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G10605.1 Arabidopsis thaliana 0.82 methyltransferases SRR1257401:GSM1371363: mock Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G10605.2 Arabidopsis thaliana 0.33 methyltransferases ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G10610.1 Arabidopsis thaliana 0.44 cytochrome P450, family 81, subfamily K, polypeptide 1 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT5G10650.2 Arabidopsis thaliana 0.75 RING/U-box superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G10660.2 Arabidopsis thaliana 0.31 calmodulin-binding protein-related SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G10680.1 Arabidopsis thaliana 0.31 calmodulin-binding protein-related SRR1144843:WS 7 days on CIM AT5G10695.1 Arabidopsis thaliana 0.49 Unknown SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G10700.1 Arabidopsis thaliana 0.36 Peptidyl-tRNA hydrolase II (PTH2) family protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT5G10740.1 Arabidopsis thaliana 0.45 Protein phosphatase 2C family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G10760.1 Arabidopsis thaliana 0.48 Eukaryotic aspartyl protease family protein SRR514998:GSM736442: At_mRNASeq AT5G10780.1 Arabidopsis thaliana 0.40 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G10890.1 Arabidopsis thaliana 0.42 myosin heavy chain-related SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G10910.1 Arabidopsis thaliana 0.31 mraW methylase family protein SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G10945.1 Arabidopsis thaliana 0.37 MIR156D; miRNA SRR477082:GSM912641: pifq;bzr1-1D RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT5G10950.1 Arabidopsis thaliana 0.59 Tudor/PWWP/MBT superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G11040.1 Arabidopsis thaliana 0.39 TRS120 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G11110.1 Arabidopsis thaliana 0.35 sucrose phosphate synthase 2F SRR364677:GFP sample AT5G11160.1 Arabidopsis thaliana 0.34 adenine phosphoribosyltransferase 5 SRR1144844:WS 2 days on SIM AT5G11210.1 Arabidopsis thaliana 0.40 glutamate receptor 2.5 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G11220.1 Arabidopsis thaliana 0.32 Unknown SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G11250.1 Arabidopsis thaliana 0.43 Disease resistance protein (TIR-NBS-LRR class) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G11280.1 Arabidopsis thaliana 0.37 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G11340.1 Arabidopsis thaliana 0.50 Acyl-CoA N-acyltransferases (NAT) superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G11410.1 Arabidopsis thaliana 0.32 Protein kinase superfamily protein ERR588045:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G11440.1 Arabidopsis thaliana 0.62 CTC-interacting domain 5 SRR364677:GFP sample AT5G11470.1 Arabidopsis thaliana 0.66 bromo-adjacent homology (BAH) domain-containing protein DRR008478:Arabidopsis ibm2-2 mRNA_seq AT5G11490.2 Arabidopsis thaliana 0.40 adaptin family protein SRR392132:GSM852822: mRNA-seq in fcl, technical replicate 3; Arabidopsis thaliana; RNA-Seq SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT5G11540.1 Arabidopsis thaliana 0.57 D-arabinono-1,4-lactone oxidase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G11580.1 Arabidopsis thaliana 0.35 Regulator of chromosome condensation (RCC1) family protein SRR1652315:prp8-7 AT5G11600.1 Arabidopsis thaliana 0.33 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G11640.1 Arabidopsis thaliana 0.40 Thioredoxin superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G11800.1 Arabidopsis thaliana 0.44 K+ efflux antiporter 6 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G11810.1 Arabidopsis thaliana 0.40 Unknown SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G11820.1 Arabidopsis thaliana 0.42 Plant self-incompatibility protein S1 family ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G11860.4 Arabidopsis thaliana 0.31 SCP1-like small phosphatase 5 SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G11870.1 Arabidopsis thaliana 0.51 Alkaline phytoceramidase (aPHC) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G11920.1 Arabidopsis thaliana 0.43 6-&1-fructan exohydrolase SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT5G11960.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF803) ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G11977.1 Arabidopsis thaliana 0.38 MIR156E; miRNA SRR402998:GSM867678: bzr1-1D_PAC_PPZ; Arabidopsis thaliana; RNA-Seq SRR515493:GSM951968: bzr1-1D_PAC_PPZ repeat; Arabidopsis thaliana; RNA-Seq AT5G12000.1 Arabidopsis thaliana 0.88 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G12020.1 Arabidopsis thaliana 0.73 17.6 kDa class II heat shock protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G12030.1 Arabidopsis thaliana 0.35 heat shock protein 17.6A SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G12043.1 Arabidopsis thaliana 0.41 Unknown SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G12060.1 Arabidopsis thaliana 0.49 Plant self-incompatibility protein S1 family SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT5G12110.1 Arabidopsis thaliana 0.31 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G12150.2 Arabidopsis thaliana 0.52 Rho GTPase activation protein (RhoGAP) with PH domain SRR1652317:atrtf2-2Ho AT5G12180.1 Arabidopsis thaliana 0.87 calcium-dependent protein kinase 17 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G12235.1 Arabidopsis thaliana 0.51 CLAVATA3/ESR-RELATED 22 SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G12280.2 Arabidopsis thaliana 0.54 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq AT5G12323.1 Arabidopsis thaliana 0.66 Unknown ERR351331:arabidopsis_thaliana_floral_meristem_atlas AT5G12330.1 Arabidopsis thaliana 0.42 Lateral root primordium (LRP) protein-related SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G12330.3 Arabidopsis thaliana 0.42 Lateral root primordium (LRP) protein-related SRR1144843:WS 7 days on CIM AT5G12330.4 Arabidopsis thaliana 0.48 Lateral root primordium (LRP) protein-related SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT5G12380.1 Arabidopsis thaliana 0.32 annexin 8 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G12390.1 Arabidopsis thaliana 0.64 Tetratricopeptide repeat (TPR)-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G12420.1 Arabidopsis thaliana 0.30 O-acyltransferase (WSD1-like) family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G12450.1 Arabidopsis thaliana 0.87 FBD-like domain family protein SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G12960.1 Arabidopsis thaliana 0.94 Putative glycosyl hydrolase of unknown function (DUF1680) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G13060.1 Arabidopsis thaliana 0.50 ARMADILLO BTB protein 1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G13080.1 Arabidopsis thaliana 0.31 WRKY DNA-binding protein 75 SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression AT5G13181.1 Arabidopsis thaliana 0.32 Unknown SRR1105829:Mediator-dependent changes in gene expression in the lignin-deficient mutant ref8-1 SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq AT5G13205.1 Arabidopsis thaliana 0.52 transposable element gene SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G13210.1 Arabidopsis thaliana 0.37 Uncharacterised conserved protein UCP015417, vWA SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT5G13280.1 Arabidopsis thaliana 0.37 aspartate kinase 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G13360.3 Arabidopsis thaliana 0.53 Auxin-responsive GH3 family protein SRR1652317:atrtf2-2Ho AT5G13410.1 Arabidopsis thaliana 0.32 FKBP-like peptidyl-prolyl cis-trans isomerase family protein SRR1508379:GSM1429459: Hen-16-IP1; Arabidopsis thaliana; RNA-Seq SRR1508380:GSM1429459: Hen-16-IP1; Arabidopsis thaliana; RNA-Seq SRR1508383:GSM1429461: Hen-16-IP2; Arabidopsis thaliana; RNA-Seq SRR1508384:GSM1429461: Hen-16-IP2; Arabidopsis thaliana; RNA-Seq AT5G13460.1 Arabidopsis thaliana 0.33 IQ-domain 11 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G13500.1 Arabidopsis thaliana 0.70 Unknown SRR364677:GFP sample AT5G13500.3 Arabidopsis thaliana 0.34 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G13510.1 Arabidopsis thaliana 0.37 Ribosomal protein L10 family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G13548.1 Arabidopsis thaliana 0.81 Unknown SRR364677:GFP sample AT5G13610.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF155) ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G13700.1 Arabidopsis thaliana 0.64 polyamine oxidase 1 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G13740.1 Arabidopsis thaliana 0.45 zinc induced facilitator 1 SRR1652315:prp8-7 AT5G13750.1 Arabidopsis thaliana 0.61 zinc induced facilitator-like 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G13750.3 Arabidopsis thaliana 0.35 zinc induced facilitator-like 1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G13820.1 Arabidopsis thaliana 0.33 telomeric DNA binding protein 1 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT5G13840.1 Arabidopsis thaliana 0.64 FIZZY-related 3 SRR1144843:WS 7 days on CIM AT5G13870.1 Arabidopsis thaliana 0.49 xyloglucan endotransglucosylase/hydrolase 5 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G13880.1 Arabidopsis thaliana 0.39 Unknown SRR1105595:GSM1303968: CL37_11-12_A; Arabidopsis thaliana; RNA-Seq AT5G13887.1 Arabidopsis thaliana 0.37 MIR848a; miRNA SRR1257401:GSM1371363: mock Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G13917.1 Arabidopsis thaliana 0.33 Unknown SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo AT5G13950.1 Arabidopsis thaliana 0.59 Unknown SRR1652315:prp8-7 AT5G13990.1 Arabidopsis thaliana 0.45 exocyst subunit exo70 family protein C2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G14020.1 Arabidopsis thaliana 0.31 Endosomal targeting BRO1-like domain-containing protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G14150.1 Arabidopsis thaliana 0.41 Protein of unknown function, DUF642 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G14200.3 Arabidopsis thaliana 0.33 isopropylmalate dehydrogenase 1 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G14280.1 Arabidopsis thaliana 0.30 DNA-binding storekeeper protein-related SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G14320.2 Arabidopsis thaliana 0.73 Ribosomal protein S13/S18 family SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT5G14345.1 Arabidopsis thaliana 0.36 early nodulin-like protein 21 SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G14360.1 Arabidopsis thaliana 0.33 Ubiquitin-like superfamily protein SRR364677:GFP sample SRR364678:nonGFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G14380.1 Arabidopsis thaliana 0.92 arabinogalactan protein 6 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G14470.1 Arabidopsis thaliana 0.31 GHMP kinase family protein SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT5G14480.1 Arabidopsis thaliana 0.81 beta-1,4-N-acetylglucosaminyltransferase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G14510.1 Arabidopsis thaliana 0.30 ARM repeat superfamily protein SRR1144845:be1-3 2 days on SIM AT5G14540.1 Arabidopsis thaliana 0.32 Protein of unknown function (DUF1421) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G14545.1 Arabidopsis thaliana 1.00 MIR398B; miRNA SRR307067:GSM756821: Col x Ler embryo RNA-seq AT5G14602.1 Arabidopsis thaliana 0.51 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G14660.1 Arabidopsis thaliana 0.42 peptide deformylase 1B ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G14680.1 Arabidopsis thaliana 0.33 Adenine nucleotide alpha hydrolases-like superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G14700.1 Arabidopsis thaliana 0.53 NAD(P)-binding Rossmann-fold superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G14730.1 Arabidopsis thaliana 0.55 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G14740.2 Arabidopsis thaliana 0.44 carbonic anhydrase 2 SRR520243:GSM958263: pif145-RNA-1; Arabidopsis thaliana; RNA-Seq SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT5G14740.4 Arabidopsis thaliana 0.46 carbonic anhydrase 2 SRR392122:GSM852812: mRNA-seq in C24, technical replicate 1; Arabidopsis thaliana; RNA-Seq SRR392123:GSM852813: mRNA-seq in C24, technical replicate 2; Arabidopsis thaliana; RNA-Seq SRR392124:GSM852814: mRNA-seq in C24, technical replicate 3; Arabidopsis thaliana; RNA-Seq SRR392125:GSM852815: mRNA-seq in C24, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT5G14790.1 Arabidopsis thaliana 0.44 ARM repeat superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G14870.1 Arabidopsis thaliana 0.59 cyclic nucleotide-gated channel 18 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G14880.1 Arabidopsis thaliana 0.34 Potassium transporter family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G14890.1 Arabidopsis thaliana 0.94 NHL domain-containing protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G14930.2 Arabidopsis thaliana 0.30 senescence-associated gene 101 SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT5G14930.3 Arabidopsis thaliana 0.45 senescence-associated gene 101 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G14940.1 Arabidopsis thaliana 0.36 Major facilitator superfamily protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G14950.1 Arabidopsis thaliana 0.46 golgi alpha-mannosidase II SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G14960.1 Arabidopsis thaliana 0.72 DP-E2F-like 2 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G15008.1 Arabidopsis thaliana 0.90 Unknown SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq AT5G15020.1 Arabidopsis thaliana 0.45 SIN3-like 2 SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq AT5G15022.1 Arabidopsis thaliana 0.70 Unknown SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G15030.2 Arabidopsis thaliana 0.62 Paired amphipathic helix (PAH2) superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G15050.1 Arabidopsis thaliana 0.30 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G15100.1 Arabidopsis thaliana 0.40 Auxin efflux carrier family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G15110.1 Arabidopsis thaliana 0.85 Pectate lyase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G15130.1 Arabidopsis thaliana 0.57 WRKY DNA-binding protein 72 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT5G15140.1 Arabidopsis thaliana 0.60 Galactose mutarotase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G15150.1 Arabidopsis thaliana 0.31 homeobox 3 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G15200.2 Arabidopsis thaliana 0.32 Ribosomal protein S4 SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G15250.2 Arabidopsis thaliana 0.46 FTSH protease 6 SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G15310.1 Arabidopsis thaliana 0.31 myb domain protein 16 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT5G15430.1 Arabidopsis thaliana 0.51 Plant calmodulin-binding protein-related SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G15480.1 Arabidopsis thaliana 0.61 C2H2-type zinc finger family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G15546.1 Arabidopsis thaliana 0.56 Unknown SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT5G15600.1 Arabidopsis thaliana 0.83 SPIRAL1-like4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G15660.1 Arabidopsis thaliana 0.39 F-box and associated interaction domains-containing protein SRR364677:GFP sample AT5G15780.1 Arabidopsis thaliana 0.40 Pollen Ole e 1 allergen and extensin family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G15820.1 Arabidopsis thaliana 0.42 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G15833.1 Arabidopsis thaliana 0.41 MIR865a; miRNA SRR515336:GSM951358: rve8_mock_1; Arabidopsis thaliana; RNA-Seq AT5G15853.1 Arabidopsis thaliana 0.78 Unknown SRR1257408:GSM1371370: infected T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G15870.1 Arabidopsis thaliana 0.36 glycosyl hydrolase family 81 protein SRR364677:GFP sample AT5G15890.1 Arabidopsis thaliana 0.53 TRICHOME BIREFRINGENCE-LIKE 21 SRR364677:GFP sample AT5G15940.1 Arabidopsis thaliana 0.57 NAD(P)-binding Rossmann-fold superfamily protein SRR364678:nonGFP sample AT5G16023.1 Arabidopsis thaliana 0.59 ROTUNDIFOLIA like 18 SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT5G16100.1 Arabidopsis thaliana 0.80 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G16190.1 Arabidopsis thaliana 0.39 cellulose synthase like A11 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G16200.1 Arabidopsis thaliana 0.36 50S ribosomal protein-related SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR1005390:GSM1242379: cmt2_mRNA_rep2; Arabidopsis thaliana; RNA-Seq AT5G16230.1 Arabidopsis thaliana 0.35 Plant stearoyl-acyl-carrier-protein desaturase family protein SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm SRR068971:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068972:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068973:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068974:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068978:GSM607730: Ler-WTxCol-met1_Endosperm SRR068979:GSM607730: Ler-WTxCol-met1_Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm SRR068987:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068988:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068989:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068990:GSM607735: Ler-WTxCol-WT_full-Endosperm AT5G16286.1 Arabidopsis thaliana 0.79 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT5G16310.1 Arabidopsis thaliana 0.32 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G16330.1 Arabidopsis thaliana 0.53 NC domain-containing protein-related SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G16370.1 Arabidopsis thaliana 0.33 acyl activating enzyme 5 SRR627669:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq SRR627670:GSM1047663: pif145-RNA; Arabidopsis thaliana; RNA-Seq AT5G16390.2 Arabidopsis thaliana 0.30 chloroplastic acetylcoenzyme A carboxylase 1 SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G16430.1 Arabidopsis thaliana 0.73 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G16480.1 Arabidopsis thaliana 0.61 Phosphotyrosine protein phosphatases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G16500.1 Arabidopsis thaliana 0.77 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G16510.1 Arabidopsis thaliana 0.33 Alpha-1,4-glucan-protein synthase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G16540.1 Arabidopsis thaliana 0.87 zinc finger nuclease 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G16540.3 Arabidopsis thaliana 0.91 zinc finger nuclease 3 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G16570.1 Arabidopsis thaliana 0.54 glutamine synthetase 1;4 SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT5G16830.1 Arabidopsis thaliana 0.32 syntaxin of plants 21 SRR364677:GFP sample SRR364678:nonGFP sample AT5G16890.1 Arabidopsis thaliana 0.33 Exostosin family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G16900.1 Arabidopsis thaliana 0.34 Leucine-rich repeat protein kinase family protein SRR364677:GFP sample SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G16910.1 Arabidopsis thaliana 0.71 cellulose-synthase like D2 SRR364677:GFP sample AT5G16980.1 Arabidopsis thaliana 0.30 Zinc-binding dehydrogenase family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G16980.2 Arabidopsis thaliana 0.30 Zinc-binding dehydrogenase family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G17020.2 Arabidopsis thaliana 0.45 exportin 1A SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G17030.1 Arabidopsis thaliana 0.52 UDP-glucosyl transferase 78D3 SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT5G17040.1 Arabidopsis thaliana 0.31 UDP-Glycosyltransferase superfamily protein SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT5G17050.1 Arabidopsis thaliana 0.39 UDP-glucosyl transferase 78D2 SRR976397:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress SRR976398:Treatment sample from RNA-Seq analysis of Arabidopsis seedlings undergoing cold stress AT5G17073.1 Arabidopsis thaliana 0.89 Unknown SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq AT5G17150.1 Arabidopsis thaliana 0.38 Cystatin/monellin superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G17233.1 Arabidopsis thaliana 0.42 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G17262.1 Arabidopsis thaliana 0.42 Unknown SRR1037375:RNA-Seq AT5G17290.1 Arabidopsis thaliana 0.34 autophagy protein Apg5 family SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. AT5G17310.1 Arabidopsis thaliana 0.30 UDP-glucose pyrophosphorylase 2 SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G17340.1 Arabidopsis thaliana 0.37 Putative membrane lipoprotein SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT5G17350.1 Arabidopsis thaliana 0.34 Unknown SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G17400.1 Arabidopsis thaliana 0.80 endoplasmic reticulum-adenine nucleotide transporter 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G17430.1 Arabidopsis thaliana 0.54 Integrase-type DNA-binding superfamily protein SRR1144843:WS 7 days on CIM AT5G17450.2 Arabidopsis thaliana 0.38 Heavy metal transport/detoxification superfamily protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT5G17530.2 Arabidopsis thaliana 0.30 phosphoglucosamine mutase family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G17680.1 Arabidopsis thaliana 0.67 disease resistance protein (TIR-NBS-LRR class), putative SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G17730.1 Arabidopsis thaliana 0.31 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G17780.1 Arabidopsis thaliana 0.36 alpha/beta-Hydrolases superfamily protein SRR1652315:prp8-7 AT5G17810.2 Arabidopsis thaliana 0.47 WUSCHEL related homeobox 12 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G17847.1 Arabidopsis thaliana 0.56 Unknown SRR446032:Vir.1h.B AT5G17860.1 Arabidopsis thaliana 0.36 calcium exchanger 7 SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G17890.1 Arabidopsis thaliana 0.32 DA1-related protein 4 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G17990.1 Arabidopsis thaliana 0.38 tryptophan biosynthesis 1 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G18065.1 Arabidopsis thaliana 0.44 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G18085.1 Arabidopsis thaliana 0.53 pre-tRNA SRR499983:col-0 replicate 1 SRR499986:gun1 replicate 1 AT5G18150.1 Arabidopsis thaliana 0.34 Methyltransferase-related protein SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT5G18200.1 Arabidopsis thaliana 0.35 UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. AT5G18255.2 Arabidopsis thaliana 0.41 other RNA SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1575169:GSM1504379: totalArab_nuc_rep2_DSN; Arabidopsis thaliana; RNA-Seq SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G18280.1 Arabidopsis thaliana 0.48 apyrase 2 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G18360.1 Arabidopsis thaliana 0.59 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G18390.1 Arabidopsis thaliana 0.33 Pentatricopeptide repeat (PPR) superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G18403.1 Arabidopsis thaliana 0.31 Putative membrane lipoprotein SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq AT5G18404.1 Arabidopsis thaliana 0.38 Unknown SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq SRR1257403:GSM1371365: infected Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G18450.1 Arabidopsis thaliana 0.59 Integrase-type DNA-binding superfamily protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G18510.1 Arabidopsis thaliana 0.72 Aminotransferase-like, plant mobile domain family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G18540.2 Arabidopsis thaliana 0.38 Unknown SRR627657:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT5G18560.1 Arabidopsis thaliana 0.45 Integrase-type DNA-binding superfamily protein SRR1144842:be1-3 7 days on CIM AT5G18680.1 Arabidopsis thaliana 0.39 tubby like protein 11 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G18748.1 Arabidopsis thaliana 0.49 Unknown SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT5G18780.1 Arabidopsis thaliana 0.33 F-box/RNI-like superfamily protein SRR988549:GSM1232785: WT_mRNA; Arabidopsis thaliana; RNA-Seq AT5G18800.1 Arabidopsis thaliana 0.42 Cox19-like CHCH family protein SRR627678:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq AT5G18910.1 Arabidopsis thaliana 0.86 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G18930.1 Arabidopsis thaliana 0.37 Adenosylmethionine decarboxylase family protein SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM AT5G19010.1 Arabidopsis thaliana 0.36 mitogen-activated protein kinase 16 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G19015.1 Arabidopsis thaliana 0.50 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G19020.1 Arabidopsis thaliana 0.44 mitochondrial editing factor 18 SRR364677:GFP sample AT5G19025.1 Arabidopsis thaliana 0.48 Ribosomal protein L34e superfamily protein SRR364677:GFP sample AT5G19040.1 Arabidopsis thaliana 0.34 isopentenyltransferase 5 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G19070.1 Arabidopsis thaliana 0.35 SNARE associated Golgi protein family SRR364677:GFP sample AT5G19090.2 Arabidopsis thaliana 0.48 Heavy metal transport/detoxification superfamily protein SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR1144845:be1-3 2 days on SIM AT5G19100.1 Arabidopsis thaliana 0.48 Eukaryotic aspartyl protease family protein SRR364678:nonGFP sample AT5G19130.1 Arabidopsis thaliana 0.34 GPI transamidase component family protein / Gaa1-like family protein SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G19140.1 Arabidopsis thaliana 0.38 Aluminium induced protein with YGL and LRDR motifs SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT5G19151.1 Arabidopsis thaliana 0.40 Unknown SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT5G19172.1 Arabidopsis thaliana 0.33 Cysteine-rich protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G19175.1 Arabidopsis thaliana 0.40 Cysteine-rich protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G19221.1 Arabidopsis thaliana 0.49 other RNA SRR493098:Untreated Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR493101:Untreated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT5G19230.1 Arabidopsis thaliana 0.35 Glycoprotein membrane precursor GPI-anchored SRR364677:GFP sample AT5G19250.1 Arabidopsis thaliana 0.50 Glycoprotein membrane precursor GPI-anchored SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G19257.1 Arabidopsis thaliana 0.46 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G19340.1 Arabidopsis thaliana 0.76 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G19360.1 Arabidopsis thaliana 0.46 calcium-dependent protein kinase 34 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G19390.3 Arabidopsis thaliana 0.67 Rho GTPase activation protein (RhoGAP) with PH domain SRR392127:GSM852817: mRNA-seq in flc, technical replicate 2; Arabidopsis thaliana; RNA-Seq AT5G19400.2 Arabidopsis thaliana 0.51 Telomerase activating protein Est1 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G19400.3 Arabidopsis thaliana 0.44 Telomerase activating protein Est1 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G19460.1 Arabidopsis thaliana 0.31 nudix hydrolase homolog 20 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G19470.1 Arabidopsis thaliana 0.79 nudix hydrolase homolog 24 SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT5G19470.2 Arabidopsis thaliana 0.47 nudix hydrolase homolog 24 SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient SRR1061364:GSM1298732: L2_HiSeq; Arabidopsis thaliana; RNA-Seq SRR1061365:GSM1298733: L2_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT5G19473.1 Arabidopsis thaliana 0.92 RPM1-interacting protein 4 (RIN4) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G19580.1 Arabidopsis thaliana 0.93 glyoxal oxidase-related protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G19650.1 Arabidopsis thaliana 0.40 ovate family protein 8 SRR1144842:be1-3 7 days on CIM AT5G19670.1 Arabidopsis thaliana 0.35 Exostosin family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G19680.1 Arabidopsis thaliana 0.35 Leucine-rich repeat (LRR) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G19729.1 Arabidopsis thaliana 0.35 Unknown SRR345563:GSM798297: mRNASeq_skip_rep1 SRR1180008:GSM1337751: Arabidopsis thaliana Zu-0 X Edi-0 seedling, biological replicate 3; Arabidopsis thaliana; RNA-Seq AT5G19730.1 Arabidopsis thaliana 0.62 Pectin lyase-like superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G19800.1 Arabidopsis thaliana 0.38 hydroxyproline-rich glycoprotein family protein SRR364677:GFP sample AT5G19860.1 Arabidopsis thaliana 0.39 Protein of unknown function, DUF538 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G19890.1 Arabidopsis thaliana 0.63 Peroxidase superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G19940.2 Arabidopsis thaliana 0.37 Plastid-lipid associated protein PAP / fibrillin family protein SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT5G19950.1 Arabidopsis thaliana 0.37 Domain of unknown function (DUF1767) ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT5G19970.1 Arabidopsis thaliana 0.35 Unknown SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G20000.1 Arabidopsis thaliana 0.59 AAA-type ATPase family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G20090.2 Arabidopsis thaliana 0.33 Uncharacterised protein family (UPF0041) SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G20100.1 Arabidopsis thaliana 0.65 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G20140.2 Arabidopsis thaliana 0.39 SOUL heme-binding family protein SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq AT5G20160.3 Arabidopsis thaliana 0.37 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein SRR345563:GSM798297: mRNASeq_skip_rep1 AT5G20180.2 Arabidopsis thaliana 0.61 Ribosomal protein L36 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G20190.1 Arabidopsis thaliana 0.33 Tetratricopeptide repeat (TPR)-like superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G20270.1 Arabidopsis thaliana 0.39 heptahelical transmembrane protein1 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G20320.2 Arabidopsis thaliana 0.46 dicer-like 4 SRR307074:GSM756824: Ler x Col endosperm RNA-seq AT5G20380.1 Arabidopsis thaliana 0.38 phosphate transporter 4;5 SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G20390.1 Arabidopsis thaliana 0.94 Glycosyl hydrolase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G20400.1 Arabidopsis thaliana 0.49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G20410.1 Arabidopsis thaliana 0.90 monogalactosyldiacylglycerol synthase 2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G20447.1 Arabidopsis thaliana 0.54 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G20550.1 Arabidopsis thaliana 0.64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G20670.1 Arabidopsis thaliana 0.30 Protein of unknown function (DUF1677) SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G20690.1 Arabidopsis thaliana 0.86 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G20736.1 Arabidopsis thaliana 0.42 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G20790.2 Arabidopsis thaliana 0.74 Unknown SRR1260035:P-_hps7_R2 AT5G20810.2 Arabidopsis thaliana 0.35 SAUR-like auxin-responsive protein family SRR307069:GSM756822: Col x Ler endosperm RNA-seq AT5G20830.1 Arabidopsis thaliana 0.31 sucrose synthase 1 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries AT5G20850.1 Arabidopsis thaliana 0.45 RAS associated with diabetes protein 51 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G20852.1 Arabidopsis thaliana 0.33 pre-tRNA SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR499989:gun1/sig6 replicate 2 AT5G20856.1 Arabidopsis thaliana 0.44 pre-tRNA SRR527175:nrpe1 replicate2 AT5G20858.1 Arabidopsis thaliana 0.47 pre-tRNA SRR499986:gun1 replicate 1 AT5G20870.1 Arabidopsis thaliana 0.66 O-Glycosyl hydrolases family 17 protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G20880.1 Arabidopsis thaliana 0.32 transposable element gene SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G20910.1 Arabidopsis thaliana 0.72 RING/U-box superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G20950.2 Arabidopsis thaliana 0.39 Glycosyl hydrolase family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G20960.2 Arabidopsis thaliana 0.35 aldehyde oxidase 1 SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G21050.1 Arabidopsis thaliana 0.64 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G21080.1 Arabidopsis thaliana 0.34 Uncharacterized protein SRR364677:GFP sample SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G21900.1 Arabidopsis thaliana 0.57 RNI-like superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G21920.2 Arabidopsis thaliana 0.39 YGGT family protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT5G21960.1 Arabidopsis thaliana 0.36 Integrase-type DNA-binding superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G21990.1 Arabidopsis thaliana 0.36 Tetratricopeptide repeat (TPR)-like superfamily protein SRR364677:GFP sample AT5G22040.1 Arabidopsis thaliana 0.47 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G22040.3 Arabidopsis thaliana 0.63 Unknown SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT5G22070.1 Arabidopsis thaliana 0.44 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G22120.1 Arabidopsis thaliana 0.41 Unknown SRR1652315:prp8-7 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G22140.1 Arabidopsis thaliana 0.59 FAD/NAD(P)-binding oxidoreductase family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G22140.2 Arabidopsis thaliana 0.78 FAD/NAD(P)-binding oxidoreductase family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G22240.1 Arabidopsis thaliana 0.41 Ovate family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G22250.1 Arabidopsis thaliana 0.31 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G22300.1 Arabidopsis thaliana 0.55 nitrilase 4 SRR1049385:Arabidopsis thaliana Transcriptome or Gene expression SRR1049386:Arabidopsis thaliana Transcriptome or Gene expression SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G22320.1 Arabidopsis thaliana 0.43 Leucine-rich repeat (LRR) family protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT5G22340.1 Arabidopsis thaliana 0.33 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G22340.2 Arabidopsis thaliana 0.39 Unknown SRR1046888:GSM1287153: Arabidopsis thaliana Wil-2 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G22355.1 Arabidopsis thaliana 0.56 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G22410.1 Arabidopsis thaliana 0.37 root hair specific 18 SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample SRR1260038:P-_WT_R1 AT5G22430.1 Arabidopsis thaliana 0.42 Pollen Ole e 1 allergen and extensin family protein SRR1061358:GSM1298726: FB1_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT5G22460.2 Arabidopsis thaliana 0.31 alpha/beta-Hydrolases superfamily protein SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT5G22490.1 Arabidopsis thaliana 0.30 O-acyltransferase (WSD1-like) family protein SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq SRR764886:GSM1088167: rdm16-2 RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G22520.1 Arabidopsis thaliana 0.85 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G22530.1 Arabidopsis thaliana 0.33 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G22545.1 Arabidopsis thaliana 0.49 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G22600.1 Arabidopsis thaliana 0.42 FBD / Leucine Rich Repeat domains containing protein SRR1508242:GSM1428944: ColxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G22620.1 Arabidopsis thaliana 0.57 phosphoglycerate/bisphosphoglycerate mutase family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G22640.1 Arabidopsis thaliana 0.39 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G22660.1 Arabidopsis thaliana 0.48 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G22660.2 Arabidopsis thaliana 0.62 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G22680.1 Arabidopsis thaliana 0.82 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G22690.1 Arabidopsis thaliana 0.70 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G22770.3 Arabidopsis thaliana 0.30 alpha-adaptin SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT5G22800.1 Arabidopsis thaliana 0.31 Alanyl-tRNA synthetase, class IIc SRR1144842:be1-3 7 days on CIM AT5G22860.1 Arabidopsis thaliana 0.38 Serine carboxypeptidase S28 family protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G22860.2 Arabidopsis thaliana 0.35 Serine carboxypeptidase S28 family protein SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G22870.1 Arabidopsis thaliana 0.49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G22980.1 Arabidopsis thaliana 0.60 serine carboxypeptidase-like 47 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G22990.1 Arabidopsis thaliana 0.33 C2H2-like zinc finger protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G23020.1 Arabidopsis thaliana 0.45 2-isopropylmalate synthase 2 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G23027.1 Arabidopsis thaliana 0.73 Unknown SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A AT5G23065.1 Arabidopsis thaliana 0.31 MIR162B; miRNA SRR392122:GSM852812: mRNA-seq in C24, technical replicate 1; Arabidopsis thaliana; RNA-Seq AT5G23070.1 Arabidopsis thaliana 0.36 Thymidine kinase SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT5G23170.1 Arabidopsis thaliana 0.39 Protein kinase superfamily protein SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition SRR068971:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068972:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068973:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068974:GSM607728: Col-WTxLer-WT_full-Endosperm AT5G23270.1 Arabidopsis thaliana 0.95 sugar transporter 11 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G23310.1 Arabidopsis thaliana 0.43 Fe superoxide dismutase 3 SRR1652316:atrtf2-2He AT5G23330.1 Arabidopsis thaliana 0.37 Nucleotidylyl transferase superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G23340.1 Arabidopsis thaliana 0.33 RNI-like superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries AT5G23360.1 Arabidopsis thaliana 0.32 GRAM domain-containing protein / ABA-responsive protein-related ERR377681:Illumina HiSeq 2500 sequencing AT5G23370.1 Arabidopsis thaliana 0.38 GRAM domain-containing protein / ABA-responsive protein-related SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G23411.1 Arabidopsis thaliana 0.56 Unknown SRR1652315:prp8-7 SRR1257399:GSM1371361: infected T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G23413.1 Arabidopsis thaliana 0.40 Unknown SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G23430.2 Arabidopsis thaliana 0.35 Transducin/WD40 repeat-like superfamily protein SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G23540.1 Arabidopsis thaliana 0.36 Mov34/MPN/PAD-1 family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G23550.1 Arabidopsis thaliana 0.48 Got1/Sft2-like vescicle transport protein family SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G23650.1 Arabidopsis thaliana 0.60 Homeodomain-like transcriptional regulator SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G23670.1 Arabidopsis thaliana 0.31 long chain base2 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G23690.1 Arabidopsis thaliana 0.32 Polynucleotide adenylyltransferase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G23700.1 Arabidopsis thaliana 0.48 Unknown SRR364678:nonGFP sample AT5G23710.1 Arabidopsis thaliana 0.58 DNA binding;DNA-directed RNA polymerases SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G23720.2 Arabidopsis thaliana 0.48 dual specificity protein phosphatase family protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G23730.1 Arabidopsis thaliana 0.30 Transducin/WD40 repeat-like superfamily protein DRR008476: AT5G23780.1 Arabidopsis thaliana 0.61 DOMAIN OF UNKNOWN FUNCTION 724 9 SRR1144843:WS 7 days on CIM AT5G23810.2 Arabidopsis thaliana 0.43 amino acid permease 7 SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT5G23830.1 Arabidopsis thaliana 0.32 MD-2-related lipid recognition domain-containing protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR926201:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 1 SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 SRR926209:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 1 SRR926211:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 2 SRR926212:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz2-1 bio rep 3 SRR926216:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 1 SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT5G23870.1 Arabidopsis thaliana 0.34 Pectinacetylesterase family protein SRR1652313:control ERR588045:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G23903.1 Arabidopsis thaliana 0.36 Unknown SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G23970.1 Arabidopsis thaliana 0.64 HXXXD-type acyl-transferase family protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G23980.1 Arabidopsis thaliana 0.74 ferric reduction oxidase 4 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G23989.1 Arabidopsis thaliana 0.33 Unknown SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G23990.1 Arabidopsis thaliana 0.32 ferric reduction oxidase 5 SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G24030.1 Arabidopsis thaliana 0.37 SLAC1 homologue 3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G24040.1 Arabidopsis thaliana 0.39 Protein of unknown function (DUF295) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G24040.2 Arabidopsis thaliana 0.44 Protein of unknown function (DUF295) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G24060.1 Arabidopsis thaliana 0.31 Pentatricopeptide repeat (PPR) superfamily protein SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G24070.1 Arabidopsis thaliana 0.58 Peroxidase superfamily protein SRR364678:nonGFP sample AT5G24080.1 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G24100.1 Arabidopsis thaliana 0.56 Leucine-rich repeat protein kinase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G24105.1 Arabidopsis thaliana 0.85 arabinogalactan protein 41 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G24150.1 Arabidopsis thaliana 0.69 FAD/NAD(P)-binding oxidoreductase family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G24180.1 Arabidopsis thaliana 0.70 Lipase class 3-related protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G24190.1 Arabidopsis thaliana 0.46 Lipase class 3-related protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G24200.1 Arabidopsis thaliana 0.35 alpha/beta-Hydrolases superfamily protein SRR446035:Avr.6h.A SRR446041:Avr.12h.A SRR446042:Avr.12h.B AT5G24205.1 Arabidopsis thaliana 0.45 other RNA SRR513741:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 1 SRR513742:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 1 SRR513743:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513744:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT5G24206.1 Arabidopsis thaliana 0.47 other RNA SRR513741:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 1 SRR513742:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 1 SRR513743:SA treated Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513744:SA treated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT5G24220.1 Arabidopsis thaliana 0.37 Lipase class 3-related protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G24270.1 Arabidopsis thaliana 0.51 Calcium-binding EF-hand family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G24270.2 Arabidopsis thaliana 0.71 Calcium-binding EF-hand family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G24290.2 Arabidopsis thaliana 0.31 Vacuolar iron transporter (VIT) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G24310.1 Arabidopsis thaliana 0.65 ABL interactor-like protein 3 SRR364677:GFP sample AT5G24310.2 Arabidopsis thaliana 0.52 ABL interactor-like protein 3 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G24313.1 Arabidopsis thaliana 0.31 Unknown SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G24340.1 Arabidopsis thaliana 0.44 3'-5' exonuclease domain-containing protein SRR501598:GSM938344: atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT5G24355.1 Arabidopsis thaliana 0.46 Unknown SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G24420.1 Arabidopsis thaliana 0.36 6-phosphogluconolactonase 5 SRR1207198:GSM1359150: nga 3; Arabidopsis thaliana; RNA-Seq AT5G24440.1 Arabidopsis thaliana 0.53 CTC-interacting domain 13 SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G24470.1 Arabidopsis thaliana 0.44 pseudo-response regulator 5 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G24480.1 Arabidopsis thaliana 0.57 Beta-galactosidase related protein SRR501601:GSM938349: met1_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq AT5G24540.1 Arabidopsis thaliana 0.60 beta glucosidase 31 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G24580.1 Arabidopsis thaliana 0.63 Heavy metal transport/detoxification superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G24580.3 Arabidopsis thaliana 0.39 Heavy metal transport/detoxification superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G24620.2 Arabidopsis thaliana 0.35 Pathogenesis-related thaumatin superfamily protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT5G24630.1 Arabidopsis thaliana 0.34 double-stranded DNA binding SRR1144842:be1-3 7 days on CIM AT5G24660.1 Arabidopsis thaliana 0.57 response to low sulfur 2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G24670.2 Arabidopsis thaliana 0.55 Cytidine/deoxycytidylate deaminase family protein SRR609410:RNAseq data from loss of function mutant of BON1 in Ws AT5G24760.3 Arabidopsis thaliana 0.39 GroES-like zinc-binding dehydrogenase family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm AT5G24879.1 Arabidopsis thaliana 0.45 Unknown SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G24880.1 Arabidopsis thaliana 0.31 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G24940.1 Arabidopsis thaliana 0.71 Protein phosphatase 2C family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G24960.1 Arabidopsis thaliana 0.52 cytochrome P450, family 71, subfamily A, polypeptide 14 SRR1144843:WS 7 days on CIM AT5G25020.1 Arabidopsis thaliana 0.35 Protein of unknown function (DUF1336) SRR1260038:P-_WT_R1 AT5G25040.3 Arabidopsis thaliana 0.35 Major facilitator superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G25050.1 Arabidopsis thaliana 0.58 Major facilitator superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G25102.1 Arabidopsis thaliana 0.41 Unknown SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR764886:GSM1088167: rdm16-2 RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G25110.1 Arabidopsis thaliana 0.32 CBL-interacting protein kinase 25 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT5G25150.1 Arabidopsis thaliana 0.33 TBP-associated factor 5 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G25160.1 Arabidopsis thaliana 0.36 zinc finger protein 3 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G25180.1 Arabidopsis thaliana 0.35 cytochrome P450, family 71, subfamily B, polypeptide 14 SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046882:GSM1287147: Arabidopsis thaliana Sf-2 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G25280.2 Arabidopsis thaliana 0.44 serine-rich protein-related SRR1584460:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR1584461:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT5G25340.1 Arabidopsis thaliana 0.90 Ubiquitin-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G25380.1 Arabidopsis thaliana 0.35 cyclin a2;1 SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G25422.1 Arabidopsis thaliana 0.32 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G25425.1 Arabidopsis thaliana 0.58 glycine-rich protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G25430.1 Arabidopsis thaliana 0.89 HCO3- transporter family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G25440.1 Arabidopsis thaliana 0.85 Protein kinase superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G25450.1 Arabidopsis thaliana 0.31 Cytochrome bd ubiquinol oxidase, 14kDa subunit SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G25450.2 Arabidopsis thaliana 0.62 Cytochrome bd ubiquinol oxidase, 14kDa subunit SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G25470.1 Arabidopsis thaliana 0.32 AP2/B3-like transcriptional factor family protein SRR307075:GSM756824: Ler x Col endosperm RNA-seq AT5G25530.1 Arabidopsis thaliana 0.69 DNAJ heat shock family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G25610.1 Arabidopsis thaliana 0.36 BURP domain-containing protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G25620.1 Arabidopsis thaliana 0.35 Flavin-binding monooxygenase family protein SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G25620.2 Arabidopsis thaliana 0.44 Flavin-binding monooxygenase family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G25640.1 Arabidopsis thaliana 0.32 Rhomboid-related intramembrane serine protease family protein SRR364677:GFP sample AT5G25750.1 Arabidopsis thaliana 0.32 Unknown SRR1652316:atrtf2-2He SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G25880.1 Arabidopsis thaliana 0.36 NADP-malic enzyme 3 SRR364677:GFP sample AT5G25890.1 Arabidopsis thaliana 0.40 indole-3-acetic acid inducible 28 SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G25910.1 Arabidopsis thaliana 0.39 receptor like protein 52 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G25950.1 Arabidopsis thaliana 0.63 Protein of Unknown Function (DUF239) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G25970.1 Arabidopsis thaliana 0.47 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G25990.1 Arabidopsis thaliana 0.52 Unknown SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq SRR1257403:GSM1371365: infected Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G26000.1 Arabidopsis thaliana 0.50 thioglucoside glucohydrolase 1 SRR826412:Sample Control BR5 AT5G26000.2 Arabidopsis thaliana 0.37 thioglucoside glucohydrolase 1 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G26015.1 Arabidopsis thaliana 0.38 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G26030.2 Arabidopsis thaliana 0.44 ferrochelatase 1 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G26060.1 Arabidopsis thaliana 0.79 Plant self-incompatibility protein S1 family SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G26070.1 Arabidopsis thaliana 0.57 hydroxyproline-rich glycoprotein family protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G26110.1 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G26130.1 Arabidopsis thaliana 0.45 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G26147.1 Arabidopsis thaliana 0.70 MIR156F; miRNA SRR974750:GSM1226366: mRNASS-Dark_2; Arabidopsis thaliana; RNA-Seq SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT5G26170.1 Arabidopsis thaliana 0.55 WRKY DNA-binding protein 50 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G26220.1 Arabidopsis thaliana 0.40 ChaC-like family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G26250.1 Arabidopsis thaliana 0.48 Major facilitator superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G26260.1 Arabidopsis thaliana 0.34 TRAF-like family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G26300.1 Arabidopsis thaliana 0.31 TRAF-like family protein SRR1046905:GSM1287163: Bur-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046906:GSM1287164: Bur-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT5G26310.1 Arabidopsis thaliana 0.32 UDP-Glycosyltransferase superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G26350.1 Arabidopsis thaliana 0.44 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G26617.1 Arabidopsis thaliana 0.83 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G26620.1 Arabidopsis thaliana 0.42 Unknown SRR1257402:GSM1371364: mock Col0 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G26630.1 Arabidopsis thaliana 0.30 MADS-box transcription factor family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G26640.1 Arabidopsis thaliana 0.97 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G26667.1 Arabidopsis thaliana 0.40 P-loop containing nucleoside triphosphate hydrolases superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT5G26690.1 Arabidopsis thaliana 0.34 Heavy metal transport/detoxification superfamily protein SRR446035:Avr.6h.A AT5G26692.1 Arabidopsis thaliana 0.95 Putative membrane lipoprotein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G26700.1 Arabidopsis thaliana 0.92 RmlC-like cupins superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G26717.1 Arabidopsis thaliana 0.89 Putative membrane lipoprotein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G26740.1 Arabidopsis thaliana 0.50 Protein of unknown function (DUF300) SRR1019438:GSM1252264: Col-0 + BR RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR1019439:GSM1252265: Col-0 + BR RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq AT5G26742.3 Arabidopsis thaliana 0.33 DEAD box RNA helicase (RH3) SRR1046852:GSM1287117: Arabidopsis thaliana Ct-1 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G26760.2 Arabidopsis thaliana 0.52 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G26805.1 Arabidopsis thaliana 0.56 Unknown SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G26850.3 Arabidopsis thaliana 0.32 Uncharacterized protein SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq AT5G26890.1 Arabidopsis thaliana 0.44 Unknown ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT5G26912.1 Arabidopsis thaliana 0.94 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G26920.1 Arabidopsis thaliana 0.64 Cam-binding protein 60-like G SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G26920.2 Arabidopsis thaliana 0.46 Cam-binding protein 60-like G SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G26930.1 Arabidopsis thaliana 0.39 GATA transcription factor 23 SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance SRR1144842:be1-3 7 days on CIM AT5G26940.1 Arabidopsis thaliana 0.34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G26940.2 Arabidopsis thaliana 0.59 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G27010.1 Arabidopsis thaliana 0.33 ARM repeat superfamily protein SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT5G27050.1 Arabidopsis thaliana 0.56 AGAMOUS-like 101 ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT5G27090.1 Arabidopsis thaliana 0.64 AGAMOUS-like 54 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G27160.1 Arabidopsis thaliana 0.44 transposable element gene ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G27247.1 Arabidopsis thaliana 0.87 Unknown SRR1652317:atrtf2-2Ho AT5G27330.1 Arabidopsis thaliana 0.66 Prefoldin chaperone subunit family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G27340.1 Arabidopsis thaliana 0.36 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G27440.1 Arabidopsis thaliana 0.32 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G27610.1 Arabidopsis thaliana 0.46 DIRP ;Myb-like DNA-binding domain SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G27720.1 Arabidopsis thaliana 0.34 Small nuclear ribonucleoprotein family protein SRR1548688:GSM1477533: lsm4 rep 1,1; Arabidopsis thaliana; RNA-Seq SRR1548689:GSM1477534: lsm4 rep 1,2; Arabidopsis thaliana; RNA-Seq SRR1548692:GSM1477537: lsm4 rep 3,1; Arabidopsis thaliana; RNA-Seq SRR1548693:GSM1477538: lsm4 rep 3,2; Arabidopsis thaliana; RNA-Seq AT5G27771.1 Arabidopsis thaliana 0.86 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G27780.1 Arabidopsis thaliana 0.37 SAUR-like auxin-responsive protein family SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G27807.1 Arabidopsis thaliana 0.65 MIR164/MIR164C; miRNA SRR1290847:Biological replicate2 for RNA-seq data of ros5 AT5G27870.1 Arabidopsis thaliana 0.86 Plant invertase/pectin methylesterase inhibitor superfamily SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G27925.1 Arabidopsis thaliana 0.42 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G27930.1 Arabidopsis thaliana 0.33 Protein phosphatase 2C family protein SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT5G27967.1 Arabidopsis thaliana 0.63 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq AT5G27980.1 Arabidopsis thaliana 0.77 Seed maturation protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G27990.1 Arabidopsis thaliana 0.68 Pre-rRNA-processing protein TSR2, conserved region SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G28020.6 Arabidopsis thaliana 0.31 cysteine synthase D2 SRR513729:5dpi Pst(avrPphB) Col-0 mRNA-Seq, run 1, Bioreplicate 1 SRR513730:5dpi Pst(avrPphB) Col-0 mRNA-Seq, run 2, Bioreplicate 1 SRR513731:5dpi Pst(avrPphB) Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513732:5dpi Pst(avrPphB) Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT5G28052.1 Arabidopsis thaliana 0.58 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G28140.1 Arabidopsis thaliana 0.47 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G28176.1 Arabidopsis thaliana 0.37 transposable element gene SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT5G28230.1 Arabidopsis thaliana 0.50 Unknown SRR1046887:GSM1287152: Arabidopsis thaliana Wil-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046935:GSM1287193: Wil-2 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046936:GSM1287194: Wil-2 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT5G28235.1 Arabidopsis thaliana 0.43 Ulp1 protease family protein SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT5G28237.1 Arabidopsis thaliana 0.46 Pyridoxal-5'-phosphate-dependent enzyme family protein SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT5G28320.1 Arabidopsis thaliana 0.58 Unknown SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G28350.1 Arabidopsis thaliana 0.40 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G28400.1 Arabidopsis thaliana 0.42 Unknown SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G28430.1 Arabidopsis thaliana 0.47 transposable element gene SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G28442.1 Arabidopsis thaliana 0.59 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G28460.1 Arabidopsis thaliana 0.81 Pentatricopeptide repeat (PPR) superfamily protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G28470.1 Arabidopsis thaliana 0.36 Major facilitator superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G28491.1 Arabidopsis thaliana 0.53 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G28500.2 Arabidopsis thaliana 0.41 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G28524.1 Arabidopsis thaliana 0.74 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G28560.1 Arabidopsis thaliana 0.39 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G28610.1 Arabidopsis thaliana 0.44 Unknown SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT5G28642.1 Arabidopsis thaliana 0.79 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G28650.1 Arabidopsis thaliana 0.31 WRKY DNA-binding protein 74 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G28675.1 Arabidopsis thaliana 0.68 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G28680.1 Arabidopsis thaliana 0.88 Malectin/receptor-like protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G28690.1 Arabidopsis thaliana 0.91 Protein of unknown function (DUF1685) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G28760.1 Arabidopsis thaliana 0.70 transposable element gene SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT5G28781.1 Arabidopsis thaliana 0.33 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT5G28785.1 Arabidopsis thaliana 0.60 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G28821.1 Arabidopsis thaliana 0.53 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR1595569:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT5G28824.1 Arabidopsis thaliana 0.32 other RNA SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G28826.1 Arabidopsis thaliana 0.36 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G28830.1 Arabidopsis thaliana 0.38 calcium-binding EF hand family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G28845.1 Arabidopsis thaliana 0.94 transposable element gene SRR1001901:GSM1239079: IBH1 overexpression #1; Arabidopsis thaliana; RNA-Seq SRR1001902:GSM1239080: IBH1 overexpression #2; Arabidopsis thaliana; RNA-Seq AT5G28860.1 Arabidopsis thaliana 0.59 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G28880.1 Arabidopsis thaliana 0.59 transposable element gene SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT5G28897.1 Arabidopsis thaliana 0.30 Unknown SRR392128:GSM852818: mRNA-seq in flc, technical replicate 3; Arabidopsis thaliana; RNA-Seq SRR392129:GSM852819: mRNA-seq in flc, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT5G28960.1 Arabidopsis thaliana 0.40 Unknown SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G29020.1 Arabidopsis thaliana 0.41 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G29040.1 Arabidopsis thaliana 0.32 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G29044.1 Arabidopsis thaliana 0.69 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G29050.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF3287) SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501618:GSM938359: ddm1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G29054.1 Arabidopsis thaliana 1.00 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G29058.1 Arabidopsis thaliana 0.34 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G29231.1 Arabidopsis thaliana 0.44 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT5G29560.1 Arabidopsis thaliana 0.45 caleosin-related family protein SRR501600:GSM938348: met1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT5G29602.1 Arabidopsis thaliana 0.45 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G29807.1 Arabidopsis thaliana 0.39 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G30341.1 Arabidopsis thaliana 0.39 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G30410.1 Arabidopsis thaliana 0.49 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G30420.1 Arabidopsis thaliana 0.60 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G31122.1 Arabidopsis thaliana 0.77 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G31685.1 Arabidopsis thaliana 0.43 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G31752.1 Arabidopsis thaliana 0.42 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G31753.1 Arabidopsis thaliana 0.82 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G31787.1 Arabidopsis thaliana 0.83 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G31838.1 Arabidopsis thaliana 0.31 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G31855.1 Arabidopsis thaliana 0.41 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G31873.1 Arabidopsis thaliana 0.53 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G31909.1 Arabidopsis thaliana 0.45 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G32017.1 Arabidopsis thaliana 0.34 pre-tRNA SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G32035.1 Arabidopsis thaliana 0.40 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT5G32306.1 Arabidopsis thaliana 0.76 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G32358.1 Arabidopsis thaliana 0.75 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G32408.1 Arabidopsis thaliana 0.51 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT5G32410.2 Arabidopsis thaliana 0.31 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT5G32488.1 Arabidopsis thaliana 0.57 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G32489.1 Arabidopsis thaliana 0.69 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT5G32490.1 Arabidopsis thaliana 0.58 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G32511.1 Arabidopsis thaliana 0.56 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT5G32520.1 Arabidopsis thaliana 0.71 transposable element gene SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G32597.1 Arabidopsis thaliana 0.63 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT5G32613.1 Arabidopsis thaliana 0.49 Zinc knuckle (CCHC-type) family protein SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G32726.1 Arabidopsis thaliana 0.33 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT5G32775.1 Arabidopsis thaliana 0.31 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G33000.1 Arabidopsis thaliana 0.47 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G33070.1 Arabidopsis thaliana 0.68 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G33254.1 Arabidopsis thaliana 0.52 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G33300.1 Arabidopsis thaliana 0.33 chromosome-associated kinesin-related SRR1144843:WS 7 days on CIM AT5G33355.1 Arabidopsis thaliana 0.85 Defensin-like (DEFL) family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G33386.1 Arabidopsis thaliana 0.34 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G33390.1 Arabidopsis thaliana 0.31 glycine-rich protein SRR493239:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G33421.1 Arabidopsis thaliana 0.39 Unknown SRR949988:early shade responses in Arabidopsis adult plants (Col, 4 hr sun) AT5G33431.1 Arabidopsis thaliana 0.72 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G33432.1 Arabidopsis thaliana 0.43 transposable element gene SRR1144842:be1-3 7 days on CIM SRR1144845:be1-3 2 days on SIM AT5G33442.1 Arabidopsis thaliana 0.84 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G34581.1 Arabidopsis thaliana 0.58 hydroxyproline-rich glycoprotein family protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G34790.1 Arabidopsis thaliana 0.31 transposable element gene SRR515182:Untreated met1 mRNA-Seq, run 1, Bioreplicate 1 SRR515192:5dpi Pst met1 mRNA-Seq, run 1, Bioreplicate 1 AT5G34830.1 Arabidopsis thaliana 0.74 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G34837.1 Arabidopsis thaliana 0.45 transposable element gene SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT5G34846.1 Arabidopsis thaliana 0.82 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G34851.1 Arabidopsis thaliana 0.32 transposable element gene SRR931760: SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G34855.1 Arabidopsis thaliana 0.40 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G34866.1 Arabidopsis thaliana 0.34 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G34867.1 Arabidopsis thaliana 0.48 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G34869.1 Arabidopsis thaliana 0.34 Unknown SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq AT5G34905.1 Arabidopsis thaliana 0.42 Protein of unknown function (DUF784) SRR953399:GSM1210576: inflorescence; Arabidopsis thaliana; RNA-Seq AT5G34910.1 Arabidopsis thaliana 0.36 Unknown SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G34980.1 Arabidopsis thaliana 0.93 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G35050.1 Arabidopsis thaliana 0.69 Domain of unknown function (DUF1985) SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G35057.1 Arabidopsis thaliana 0.77 transposable element gene SRR501612:GSM938360: met1atxr56_seedling_RNAseq_setB; Arabidopsis thaliana; RNA-Seq AT5G35066.1 Arabidopsis thaliana 0.36 Unknown SRR1046936:GSM1287194: Wil-2 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G35069.1 Arabidopsis thaliana 0.37 Unknown SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT5G35070.2 Arabidopsis thaliana 0.52 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G35090.1 Arabidopsis thaliana 0.64 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G35110.1 Arabidopsis thaliana 0.90 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G35195.1 Arabidopsis thaliana 0.55 Defensin-like (DEFL) family protein ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT5G35290.1 Arabidopsis thaliana 0.43 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G35320.1 Arabidopsis thaliana 0.31 Unknown SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G35344.1 Arabidopsis thaliana 0.36 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G35390.1 Arabidopsis thaliana 0.92 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G35405.1 Arabidopsis thaliana 0.74 Protein of unknown function (DUF784) SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G35407.1 Arabidopsis thaliana 0.38 MIR396B; miRNA SRR1652316:atrtf2-2He SRR1257408:GSM1371370: infected T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G35510.1 Arabidopsis thaliana 0.41 Unknown SRR1257395:GSM1371357: infected NIK 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G35526.1 Arabidopsis thaliana 1.00 Unknown SRR627683:GSM1047666: pifpif3pif4pif5(pifq)-RNA; Arabidopsis thaliana; RNA-Seq AT5G35540.1 Arabidopsis thaliana 0.56 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G35610.1 Arabidopsis thaliana 0.32 Paired amphipathic helix (PAH2) superfamily protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G35631.1 Arabidopsis thaliana 0.69 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT5G35680.2 Arabidopsis thaliana 0.38 Nucleic acid-binding, OB-fold-like protein SRR446030:Avr.1h.B AT5G35688.1 Arabidopsis thaliana 0.49 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample AT5G35690.1 Arabidopsis thaliana 0.70 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G35700.1 Arabidopsis thaliana 0.45 fimbrin-like protein 2 SRR364677:GFP sample AT5G35730.1 Arabidopsis thaliana 0.33 EXS (ERD1/XPR1/SYG1) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G35738.1 Arabidopsis thaliana 0.37 Unknown SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G35760.1 Arabidopsis thaliana 0.36 Beta-galactosidase related protein SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT5G35770.1 Arabidopsis thaliana 0.35 Transducin/WD40 repeat-like superfamily protein ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT5G35945.1 Arabidopsis thaliana 0.35 Unknown SRR926202:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 2 AT5G35995.1 Arabidopsis thaliana 0.47 F-box/RNI-like superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G36002.1 Arabidopsis thaliana 0.32 other RNA SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G36002.2 Arabidopsis thaliana 0.51 other RNA SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G36120.1 Arabidopsis thaliana 0.44 cofactor assembly, complex C (B6F) SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G36170.1 Arabidopsis thaliana 0.31 high chlorophyll fluorescent 109 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G36190.1 Arabidopsis thaliana 0.53 Unknown ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G36260.1 Arabidopsis thaliana 0.38 Eukaryotic aspartyl protease family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G36870.1 Arabidopsis thaliana 0.39 glucan synthase-like 9 SRR1046851:GSM1287116: Arabidopsis thaliana Ct-1 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046911:GSM1287169: Ct-1 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046912:GSM1287170: Ct-1 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT5G36880.2 Arabidopsis thaliana 0.33 acetyl-CoA synthetase SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G36890.1 Arabidopsis thaliana 0.31 beta glucosidase 42 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT5G36890.2 Arabidopsis thaliana 0.52 beta glucosidase 42 SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT5G36905.1 Arabidopsis thaliana 0.33 transposable element gene SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT5G36925.1 Arabidopsis thaliana 0.41 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G36930.1 Arabidopsis thaliana 0.42 Disease resistance protein (TIR-NBS-LRR class) family SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 SRR515177:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT5G36930.2 Arabidopsis thaliana 0.31 Disease resistance protein (TIR-NBS-LRR class) family SRR515176:5dpi Pst ddc mRNA-Seq, run 1, Bioreplicate 1 AT5G36970.1 Arabidopsis thaliana 0.34 NDR1/HIN1-like 25 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G37020.2 Arabidopsis thaliana 0.39 auxin response factor 8 SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT5G37060.1 Arabidopsis thaliana 0.66 cation/H+ exchanger 24 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G37200.1 Arabidopsis thaliana 0.89 RING/U-box superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G37260.1 Arabidopsis thaliana 0.46 Homeodomain-like superfamily protein SRR653576:GSM1072485: Long days WT, ZT22, rep 1; Arabidopsis thaliana; RNA-Seq SRR653577:GSM1072486: Long days WT, ZT22, rep 2; Arabidopsis thaliana; RNA-Seq SRR653578:GSM1072487: Long days WT, ZT22, rep 3; Arabidopsis thaliana; RNA-Seq AT5G37340.1 Arabidopsis thaliana 0.46 ZPR1 zinc-finger domain protein ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G37340.2 Arabidopsis thaliana 0.32 ZPR1 zinc-finger domain protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G37340.3 Arabidopsis thaliana 0.43 ZPR1 zinc-finger domain protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G37380.3 Arabidopsis thaliana 0.33 Chaperone DnaJ-domain superfamily protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G37420.1 Arabidopsis thaliana 0.66 Family of unknown function (DUF577) SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G37450.1 Arabidopsis thaliana 0.38 Leucine-rich repeat protein kinase family protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G37473.1 Arabidopsis thaliana 0.42 Defensin-like (DEFL) family protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G37478.1 Arabidopsis thaliana 0.36 TPX2 (targeting protein for Xklp2) protein family SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq AT5G37485.1 Arabidopsis thaliana 0.49 other RNA SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G37490.1 Arabidopsis thaliana 0.57 ARM repeat superfamily protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G37670.1 Arabidopsis thaliana 0.36 HSP20-like chaperones superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G37750.1 Arabidopsis thaliana 0.63 Chaperone DnaJ-domain superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G37760.1 Arabidopsis thaliana 0.48 Chaperone DnaJ-domain superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G37850.3 Arabidopsis thaliana 0.51 pfkB-like carbohydrate kinase family protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G37970.1 Arabidopsis thaliana 0.49 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G38020.1 Arabidopsis thaliana 0.42 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR1046908:GSM1287166: Can-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR314817:GSM764081: Can_0_root_validation_rep1 AT5G38030.1 Arabidopsis thaliana 0.44 MATE efflux family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G38096.1 Arabidopsis thaliana 0.63 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G38120.1 Arabidopsis thaliana 0.74 AMP-dependent synthetase and ligase family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G38130.1 Arabidopsis thaliana 0.76 HXXXD-type acyl-transferase family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G38190.1 Arabidopsis thaliana 0.43 Unknown SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G38197.1 Arabidopsis thaliana 0.34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G38200.1 Arabidopsis thaliana 0.48 Class I glutamine amidotransferase-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G38300.1 Arabidopsis thaliana 0.48 Unknown ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G38310.1 Arabidopsis thaliana 0.35 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G38378.1 Arabidopsis thaliana 0.72 Plant thionin family protein SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G38390.1 Arabidopsis thaliana 0.69 F-box/RNI-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G38435.1 Arabidopsis thaliana 0.83 S-protein homologue 8 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G38440.1 Arabidopsis thaliana 0.77 Plant self-incompatibility protein S1 family SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G38450.1 Arabidopsis thaliana 0.40 cytochrome P450, family 735, subfamily A, polypeptide 1 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G38580.1 Arabidopsis thaliana 0.94 FBD-like domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G38595.1 Arabidopsis thaliana 0.42 transposable element gene SRR501600:GSM938348: met1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501605:GSM938347: ddm1_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR501613:GSM938361: met1atxr56_seedling_RNAseq_setC; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G38600.1 Arabidopsis thaliana 0.36 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT5G38610.1 Arabidopsis thaliana 0.36 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT5G38680.1 Arabidopsis thaliana 0.74 Galactose oxidase/kelch repeat superfamily protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G38690.1 Arabidopsis thaliana 0.39 Zinc-finger domain of monoamine-oxidase A repressor R1 protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G38700.1 Arabidopsis thaliana 0.49 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G38780.1 Arabidopsis thaliana 0.34 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G38895.3 Arabidopsis thaliana 0.31 RING/U-box superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G38930.1 Arabidopsis thaliana 0.55 RmlC-like cupins superfamily protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G38960.1 Arabidopsis thaliana 0.37 RmlC-like cupins superfamily protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G39020.1 Arabidopsis thaliana 0.30 Malectin/receptor-like protein kinase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G39024.1 Arabidopsis thaliana 0.49 Unknown SRR934391:GSM1185649: Sample 1 (3785); Arabidopsis thaliana; RNA-Seq AT5G39040.1 Arabidopsis thaliana 0.68 transporter associated with antigen processing protein 2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G39080.1 Arabidopsis thaliana 0.38 HXXXD-type acyl-transferase family protein SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G39110.1 Arabidopsis thaliana 0.41 RmlC-like cupins superfamily protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G39120.1 Arabidopsis thaliana 0.50 RmlC-like cupins superfamily protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G39150.1 Arabidopsis thaliana 0.34 RmlC-like cupins superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G39160.1 Arabidopsis thaliana 0.30 RmlC-like cupins superfamily protein SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq AT5G39180.1 Arabidopsis thaliana 0.81 RmlC-like cupins superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G39260.1 Arabidopsis thaliana 0.32 expansin A21 SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633728:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633729:GSM1053998: Control: Seed from ColA9 X Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT5G39290.1 Arabidopsis thaliana 0.52 expansin A26 SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 SRR493285:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 3 AT5G39320.1 Arabidopsis thaliana 0.43 UDP-glucose 6-dehydrogenase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G39365.1 Arabidopsis thaliana 0.67 Defensin-like (DEFL) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G39380.1 Arabidopsis thaliana 0.51 Plant calmodulin-binding protein-related SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G39400.1 Arabidopsis thaliana 0.88 Calcium/lipid-binding (CaLB) phosphatase SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G39420.1 Arabidopsis thaliana 0.85 CDC2C SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G39440.1 Arabidopsis thaliana 0.32 SNF1-related protein kinase 1.3 SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G39560.1 Arabidopsis thaliana 0.51 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G39580.1 Arabidopsis thaliana 0.30 Peroxidase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR364677:GFP sample SRR364678:nonGFP sample AT5G39581.1 Arabidopsis thaliana 0.31 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas AT5G39645.1 Arabidopsis thaliana 0.56 Defensin-like (DEFL) family protein SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq AT5G39650.1 Arabidopsis thaliana 0.71 Protein of unknown function (DUF679) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G39670.1 Arabidopsis thaliana 0.57 Calcium-binding EF-hand family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G39693.1 Arabidopsis thaliana 0.72 MIR869a; miRNA SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G39740.2 Arabidopsis thaliana 0.53 ribosomal protein L5 B SRR446030:Avr.1h.B AT5G39820.1 Arabidopsis thaliana 0.40 NAC domain containing protein 94 SRR1144843:WS 7 days on CIM AT5G39865.1 Arabidopsis thaliana 0.47 Glutaredoxin family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G39880.1 Arabidopsis thaliana 0.93 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G40020.1 Arabidopsis thaliana 0.34 Pathogenesis-related thaumatin superfamily protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G40090.1 Arabidopsis thaliana 0.45 Disease resistance protein (TIR-NBS class) SRR1144843:WS 7 days on CIM AT5G40130.1 Arabidopsis thaliana 0.45 Unknown SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT5G40150.1 Arabidopsis thaliana 0.45 Peroxidase superfamily protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G40180.1 Arabidopsis thaliana 0.49 Unknown SRR1652315:prp8-7 AT5G40210.1 Arabidopsis thaliana 0.79 nodulin MtN21 /EamA-like transporter family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G40240.2 Arabidopsis thaliana 0.54 nodulin MtN21 /EamA-like transporter family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G40270.1 Arabidopsis thaliana 0.34 HD domain-containing metal-dependent phosphohydrolase family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G40330.1 Arabidopsis thaliana 0.44 myb domain protein 23 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G40348.1 Arabidopsis thaliana 0.49 other RNA SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G40348.2 Arabidopsis thaliana 0.90 other RNA SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G40350.1 Arabidopsis thaliana 0.58 myb domain protein 24 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G40360.1 Arabidopsis thaliana 0.32 myb domain protein 115 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT5G40384.1 Arabidopsis thaliana 0.38 MIR866a; miRNA SRR1257402:GSM1371364: mock Col0 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G40395.1 Arabidopsis thaliana 0.49 U6acat; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G40405.1 Arabidopsis thaliana 0.35 Tetratricopeptide repeat (TPR)-like superfamily protein SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G40460.1 Arabidopsis thaliana 0.43 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G40510.1 Arabidopsis thaliana 0.36 Sucrase/ferredoxin-like family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G40550.1 Arabidopsis thaliana 0.50 SGF29 tudor-like domain SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G40550.2 Arabidopsis thaliana 0.46 SGF29 tudor-like domain SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G40580.1 Arabidopsis thaliana 0.69 20S proteasome beta subunit PBB2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G40580.2 Arabidopsis thaliana 0.35 20S proteasome beta subunit PBB2 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G40590.1 Arabidopsis thaliana 0.31 Cysteine/Histidine-rich C1 domain family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G40600.1 Arabidopsis thaliana 0.44 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G40620.1 Arabidopsis thaliana 0.72 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G40645.1 Arabidopsis thaliana 0.42 RPM1-interacting protein 4 (RIN4) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G40670.1 Arabidopsis thaliana 0.52 PQ-loop repeat family protein / transmembrane family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G40690.1 Arabidopsis thaliana 0.57 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G40700.3 Arabidopsis thaliana 0.54 Unknown SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G40720.1 Arabidopsis thaliana 0.75 Domain of unknown function (DUF23) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G40847.1 Arabidopsis thaliana 0.34 Unknown SRR1508377:GSM1429458: Hen-16-Input1; Arabidopsis thaliana; RNA-Seq AT5G40860.1 Arabidopsis thaliana 0.79 Unknown SRR364677:GFP sample AT5G40880.1 Arabidopsis thaliana 0.42 WD-40 repeat family protein / zfwd3 protein (ZFWD3) SRR364677:GFP sample SRR364678:nonGFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G40890.2 Arabidopsis thaliana 0.61 chloride channel A ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G40910.1 Arabidopsis thaliana 0.61 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G40920.1 Arabidopsis thaliana 0.59 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G40930.1 Arabidopsis thaliana 0.36 translocase of outer membrane 20-4 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G40981.1 Arabidopsis thaliana 0.42 Unknown SRR1598767:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT5G40990.1 Arabidopsis thaliana 0.66 GDSL lipase 1 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G41010.1 Arabidopsis thaliana 0.35 DNA directed RNA polymerase, 7 kDa subunit SRR1257390:GSM1371352: mock Col0 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G41070.1 Arabidopsis thaliana 0.37 dsRNA-binding protein 5 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G41080.2 Arabidopsis thaliana 0.58 PLC-like phosphodiesterases superfamily protein SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT5G41100.2 Arabidopsis thaliana 0.58 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G41130.1 Arabidopsis thaliana 0.33 Esterase/lipase/thioesterase family protein SRR1061359:GSM1298727: FB2_HiSeq; Arabidopsis thaliana; RNA-Seq SRR1061360:GSM1298728: FB2_HiSeqMplex; Arabidopsis thaliana; RNA-Seq AT5G41150.1 Arabidopsis thaliana 0.35 Restriction endonuclease, type II-like superfamily protein SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G41180.1 Arabidopsis thaliana 0.38 leucine-rich repeat transmembrane protein kinase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G41250.1 Arabidopsis thaliana 0.32 Exostosin family protein SRR1058111:GSM1297913: at-seed-ler_wt_x_col_wt 2; Arabidopsis thaliana; RNA-Seq AT5G41280.1 Arabidopsis thaliana 0.48 Receptor-like protein kinase-related family protein SRR364677:GFP sample SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G41300.1 Arabidopsis thaliana 0.54 Receptor-like protein kinase-related family protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G41401.1 Arabidopsis thaliana 0.61 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G41420.1 Arabidopsis thaliana 0.54 Unknown SRR392133:GSM852823: mRNA-seq in fcl, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT5G41450.1 Arabidopsis thaliana 0.32 RING/U-box superfamily protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G41471.1 Arabidopsis thaliana 0.44 SNOR108; snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 AT5G41550.1 Arabidopsis thaliana 0.33 Disease resistance protein (TIR-NBS-LRR class) family SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G41675.1 Arabidopsis thaliana 0.41 pre-tRNA SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT5G41680.2 Arabidopsis thaliana 0.80 Protein kinase superfamily protein SRR364677:GFP sample AT5G41700.1 Arabidopsis thaliana 0.41 ubiquitin conjugating enzyme 8 SRR1005390:GSM1242379: cmt2_mRNA_rep2; Arabidopsis thaliana; RNA-Seq AT5G41700.2 Arabidopsis thaliana 0.42 ubiquitin conjugating enzyme 8 SRR1061364:GSM1298732: L2_HiSeq; Arabidopsis thaliana; RNA-Seq SRR1061365:GSM1298733: L2_HiSeqMplex; Arabidopsis thaliana; RNA-Seq SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G41730.1 Arabidopsis thaliana 0.51 Protein kinase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G41740.1 Arabidopsis thaliana 0.32 Disease resistance protein (TIR-NBS-LRR class) family SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G41750.1 Arabidopsis thaliana 0.74 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G41750.2 Arabidopsis thaliana 0.58 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G41765.1 Arabidopsis thaliana 0.67 DNA-binding storekeeper protein-related transcriptional regulator SRR1144842:be1-3 7 days on CIM AT5G41774.1 Arabidopsis thaliana 0.44 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G41780.1 Arabidopsis thaliana 0.51 myosin heavy chain-related SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G41810.2 Arabidopsis thaliana 0.49 Unknown SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G41905.1 Arabidopsis thaliana 0.44 MIR166/MIR166E; miRNA SRR976164:APX20 at 100mm 24h AT5G41980.1 Arabidopsis thaliana 0.73 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G42020.2 Arabidopsis thaliana 0.34 Heat shock protein 70 (Hsp 70) family protein SRR627647:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq SRR627648:GSM1047660: pif4-RNA; Arabidopsis thaliana; RNA-Seq AT5G42053.1 Arabidopsis thaliana 0.46 Unknown SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G42110.1 Arabidopsis thaliana 0.40 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G42203.1 Arabidopsis thaliana 0.63 Unknown SRR1058117:GSM1297919: at-seed-ler_wt_x_col_met 2; Arabidopsis thaliana; RNA-Seq AT5G42220.1 Arabidopsis thaliana 0.32 Ubiquitin-like superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G42223.1 Arabidopsis thaliana 0.39 Defensin-like (DEFL) family protein SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT5G42230.1 Arabidopsis thaliana 0.39 serine carboxypeptidase-like 41 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G42232.1 Arabidopsis thaliana 0.60 Defensin-like (DEFL) family protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G42242.1 Arabidopsis thaliana 0.37 low-molecular-weight cysteine-rich 57 SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT5G42340.1 Arabidopsis thaliana 0.52 Plant U-Box 15 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G42350.1 Arabidopsis thaliana 0.70 Galactose oxidase/kelch repeat superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G42380.1 Arabidopsis thaliana 0.36 calmodulin like 37 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G42405.1 Arabidopsis thaliana 0.90 Unknown SRR633726:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G42420.1 Arabidopsis thaliana 0.48 Nucleotide-sugar transporter family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G42445.1 Arabidopsis thaliana 0.50 Unknown SRR1039910:GSM1276497: CvixCvi_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G42490.1 Arabidopsis thaliana 0.85 ATP binding microtubule motor family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G42504.1 Arabidopsis thaliana 0.32 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT5G42540.2 Arabidopsis thaliana 0.39 exoribonuclease 2 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G42565.1 Arabidopsis thaliana 0.49 Unknown SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G42591.1 Arabidopsis thaliana 0.48 Unknown SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq AT5G42630.1 Arabidopsis thaliana 0.52 Homeodomain-like superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G42677.1 Arabidopsis thaliana 0.35 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G42680.1 Arabidopsis thaliana 0.33 Protein of unknown function, DUF617 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT5G42680.2 Arabidopsis thaliana 0.46 Protein of unknown function, DUF617 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G42740.1 Arabidopsis thaliana 0.34 Sugar isomerase (SIS) family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G42765.1 Arabidopsis thaliana 0.66 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G42785.1 Arabidopsis thaliana 0.34 Unknown SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G42790.1 Arabidopsis thaliana 0.51 proteasome alpha subunit F1 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G42880.1 Arabidopsis thaliana 0.36 Plant protein of unknown function (DUF827) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G42895.1 Arabidopsis thaliana 0.30 ECA1 gametogenesis related family protein SRR1046862:GSM1287127: Arabidopsis thaliana Ler-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G42930.1 Arabidopsis thaliana 0.41 alpha/beta-Hydrolases superfamily protein SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT5G42965.1 Arabidopsis thaliana 0.55 Polynucleotidyl transferase, ribonuclease H-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G42970.1 Arabidopsis thaliana 0.32 Proteasome component (PCI) domain protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G43030.1 Arabidopsis thaliana 0.33 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43040.1 Arabidopsis thaliana 0.38 Cysteine/Histidine-rich C1 domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43060.1 Arabidopsis thaliana 0.31 Granulin repeat cysteine protease family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43080.1 Arabidopsis thaliana 0.78 Cyclin A3;1 ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43090.1 Arabidopsis thaliana 0.53 pumilio 13 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G43140.1 Arabidopsis thaliana 0.37 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G43170.1 Arabidopsis thaliana 0.36 zinc-finger protein 3 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G43175.1 Arabidopsis thaliana 0.47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR364677:GFP sample AT5G43185.1 Arabidopsis thaliana 0.86 Expressed protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G43190.1 Arabidopsis thaliana 0.55 Galactose oxidase/kelch repeat superfamily protein SRR446028:Mock.1h.B SRR446030:Avr.1h.B AT5G43196.1 Arabidopsis thaliana 0.42 Unknown SRR1652313:control AT5G43211.1 Arabidopsis thaliana 0.40 Unknown ERR351334:arabidopsis_thaliana_floral_meristem_atlas SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT5G43230.1 Arabidopsis thaliana 0.71 Unknown SRR364677:GFP sample AT5G43300.1 Arabidopsis thaliana 0.78 PLC-like phosphodiesterases superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G43310.1 Arabidopsis thaliana 0.37 COP1-interacting protein-related SRR633735:GSM1054002: Control: Seed from ColA9 X Col-0 rep2 single; Arabidopsis thaliana; RNA-Seq AT5G43330.1 Arabidopsis thaliana 0.38 Lactate/malate dehydrogenase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43370.1 Arabidopsis thaliana 0.32 phosphate transporter 2 SRR420816:phosphate-deficient sample #1 AT5G43370.2 Arabidopsis thaliana 0.46 phosphate transporter 2 SRR1046914:GSM1287172: Edi-0 root, biological replicate 2; Arabidopsis thaliana; RNA-Seq SRR1046917:GSM1287175: Kn-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G43380.2 Arabidopsis thaliana 0.56 type one serine/threonine protein phosphatase 6 ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43410.1 Arabidopsis thaliana 0.31 Integrase-type DNA-binding superfamily protein SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G43415.1 Arabidopsis thaliana 0.34 transposable element gene SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq AT5G43430.2 Arabidopsis thaliana 0.60 electron transfer flavoprotein beta ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43450.1 Arabidopsis thaliana 0.35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G43460.1 Arabidopsis thaliana 0.47 HR-like lesion-inducing protein-related SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. AT5G43513.1 Arabidopsis thaliana 0.32 Putative membrane lipoprotein SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq SRR1257407:GSM1371369: infected T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G43525.1 Arabidopsis thaliana 0.32 Putative membrane lipoprotein SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq AT5G43540.1 Arabidopsis thaliana 0.38 C2H2 and C2HC zinc fingers superfamily protein SRR1260035:P-_hps7_R2 AT5G43550.1 Arabidopsis thaliana 0.50 F-box associated ubiquitination effector family protein SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G43570.1 Arabidopsis thaliana 0.74 Serine protease inhibitor, potato inhibitor I-type family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT5G43603.1 Arabidopsis thaliana 0.45 MIR166/MIR166F; miRNA SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G43640.1 Arabidopsis thaliana 0.68 Ribosomal protein S19 family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43650.1 Arabidopsis thaliana 0.34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G43660.1 Arabidopsis thaliana 0.34 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G43680.1 Arabidopsis thaliana 0.44 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G43790.1 Arabidopsis thaliana 0.33 Pentatricopeptide repeat (PPR) superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43800.1 Arabidopsis thaliana 0.38 transposable element gene SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G43810.2 Arabidopsis thaliana 0.46 Stabilizer of iron transporter SufD / Polynucleotidyl transferase ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT5G43890.1 Arabidopsis thaliana 0.39 Flavin-binding monooxygenase family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G43900.2 Arabidopsis thaliana 0.47 myosin 2 ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G43910.3 Arabidopsis thaliana 0.34 pfkB-like carbohydrate kinase family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq SRR446035:Avr.6h.A AT5G43930.2 Arabidopsis thaliana 0.31 Transducin family protein / WD-40 repeat family protein SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G43950.1 Arabidopsis thaliana 0.47 Plant protein of unknown function (DUF946) SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G43980.1 Arabidopsis thaliana 0.34 plasmodesmata-located protein 1 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G44030.1 Arabidopsis thaliana 0.31 cellulose synthase A4 SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G44050.1 Arabidopsis thaliana 0.32 MATE efflux family protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G44150.1 Arabidopsis thaliana 0.51 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G44210.1 Arabidopsis thaliana 0.31 erf domain protein 9 SRR446031:Vir.1h.A AT5G44286.1 Arabidopsis thaliana 0.32 snoRNA SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G44290.1 Arabidopsis thaliana 0.30 Protein kinase superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G44290.2 Arabidopsis thaliana 0.31 Protein kinase superfamily protein SRR446032:Vir.1h.B AT5G44306.1 Arabidopsis thaliana 0.58 Unknown SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 AT5G44400.1 Arabidopsis thaliana 0.36 FAD-binding Berberine family protein SRR1144845:be1-3 2 days on SIM AT5G44410.1 Arabidopsis thaliana 0.38 FAD-binding Berberine family protein SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT5G44417.1 Arabidopsis thaliana 0.31 Unknown SRR1144844:WS 2 days on SIM AT5G44568.1 Arabidopsis thaliana 0.50 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G44570.2 Arabidopsis thaliana 0.44 Unknown SRR446035:Avr.6h.A SRR446043:Vir.12h.A AT5G44575.1 Arabidopsis thaliana 0.59 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G44582.1 Arabidopsis thaliana 0.32 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G44590.1 Arabidopsis thaliana 0.71 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G44610.1 Arabidopsis thaliana 0.36 microtubule-associated protein 18 SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G44620.1 Arabidopsis thaliana 0.47 cytochrome P450, family 706, subfamily A, polypeptide 3 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G44630.1 Arabidopsis thaliana 0.60 Terpenoid cyclases/Protein prenyltransferases superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G44730.2 Arabidopsis thaliana 0.40 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT5G44740.2 Arabidopsis thaliana 0.38 Y-family DNA polymerase H SRR1652315:prp8-7 AT5G44750.2 Arabidopsis thaliana 0.32 DNA-directed DNA polymerases SRR402995:GSM867675: Col_PAC_GA; Arabidopsis thaliana; RNA-Seq AT5G44770.1 Arabidopsis thaliana 0.74 Cysteine/Histidine-rich C1 domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G44830.1 Arabidopsis thaliana 0.68 Pectin lyase-like superfamily protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT5G44894.1 Arabidopsis thaliana 0.81 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G44900.1 Arabidopsis thaliana 0.48 Toll-Interleukin-Resistance (TIR) domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G44920.2 Arabidopsis thaliana 0.83 Toll-Interleukin-Resistance (TIR) domain family protein SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G45100.2 Arabidopsis thaliana 0.34 SBP (S-ribonuclease binding protein) family protein SRR345564:GSM798298: mRNASeq_skip_rep2 SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G45105.1 Arabidopsis thaliana 0.56 zinc transporter 8 precursor SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT5G45105.2 Arabidopsis thaliana 0.56 zinc transporter 8 precursor SRR331224:arabidopsis root in control condition SRR331228:RNAseq for arabidopsis in iron deficiency condition AT5G45180.1 Arabidopsis thaliana 0.64 Flavin-binding monooxygenase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G45280.2 Arabidopsis thaliana 0.44 Pectinacetylesterase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G45290.1 Arabidopsis thaliana 0.38 RING/U-box superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G45307.1 Arabidopsis thaliana 0.87 MIR168/MIR168B; miRNA SRR1004791:tanorexia-1 Transcriptome Profiling E2 High-Light 30 minutes Replicate A AT5G45310.1 Arabidopsis thaliana 0.60 Unknown SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G45340.1 Arabidopsis thaliana 0.65 cytochrome P450, family 707, subfamily A, polypeptide 3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G45490.2 Arabidopsis thaliana 0.40 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G45560.1 Arabidopsis thaliana 0.56 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G45573.1 Arabidopsis thaliana 0.47 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578941:GSM1014128: ddm1_exp1; Arabidopsis thaliana; RNA-Seq SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G45580.1 Arabidopsis thaliana 0.33 Homeodomain-like superfamily protein SRR364677:GFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G45810.1 Arabidopsis thaliana 0.58 CBL-interacting protein kinase 19 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G45840.1 Arabidopsis thaliana 0.75 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G45840.2 Arabidopsis thaliana 0.57 Leucine-rich repeat protein kinase family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G45870.1 Arabidopsis thaliana 0.46 PYR1-like 12 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G45880.1 Arabidopsis thaliana 0.91 Pollen Ole e 1 allergen and extensin family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G45890.1 Arabidopsis thaliana 0.90 senescence-associated gene 12 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G45900.1 Arabidopsis thaliana 0.33 ThiF family protein SRR515195:5dpi Pst Col-0, met1 control, mRNA-Seq, run 1, Bioreplicate 1 AT5G45905.1 Arabidopsis thaliana 0.57 Unknown ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT5G45940.1 Arabidopsis thaliana 0.43 nudix hydrolase homolog 11 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G45940.2 Arabidopsis thaliana 0.43 nudix hydrolase homolog 11 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G45990.1 Arabidopsis thaliana 0.53 crooked neck protein, putative / cell cycle protein, putative SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G46010.1 Arabidopsis thaliana 0.31 Homeodomain-like superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA AT5G46013.1 Arabidopsis thaliana 0.73 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G46060.1 Arabidopsis thaliana 0.34 Protein of unknown function, DUF599 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G46150.2 Arabidopsis thaliana 0.67 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G46250.3 Arabidopsis thaliana 0.66 RNA-binding protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT5G46300.1 Arabidopsis thaliana 0.37 Unknown SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA AT5G46315.1 Arabidopsis thaliana 0.61 U6-29; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G46370.1 Arabidopsis thaliana 0.62 Ca2+ activated outward rectifying K+ channel 2 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G46417.1 Arabidopsis thaliana 0.60 Unknown SRR364677:GFP sample AT5G46430.2 Arabidopsis thaliana 0.30 Ribosomal protein L32e SRR1039912:GSM1276499: LerxLer_embryo_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1144842:be1-3 7 days on CIM AT5G46470.1 Arabidopsis thaliana 0.48 disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G46510.1 Arabidopsis thaliana 0.73 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G46520.1 Arabidopsis thaliana 0.36 Disease resistance protein (TIR-NBS-LRR class) family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G46550.1 Arabidopsis thaliana 0.31 DNA-binding bromodomain-containing protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G46620.1 Arabidopsis thaliana 0.31 Unknown SRR1046859:GSM1287124: Arabidopsis thaliana Kn-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G46630.2 Arabidopsis thaliana 0.49 Clathrin adaptor complexes medium subunit family protein SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT5G46710.1 Arabidopsis thaliana 0.40 PLATZ transcription factor family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G46730.1 Arabidopsis thaliana 0.53 glycine-rich protein SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq AT5G46730.2 Arabidopsis thaliana 0.47 glycine-rich protein SRR1548688:GSM1477533: lsm4 rep 1,1; Arabidopsis thaliana; RNA-Seq SRR1548689:GSM1477534: lsm4 rep 1,2; Arabidopsis thaliana; RNA-Seq SRR1548690:GSM1477535: lsm4 rep 2,1; Arabidopsis thaliana; RNA-Seq SRR1548691:GSM1477536: lsm4 rep 2,2; Arabidopsis thaliana; RNA-Seq SRR1548692:GSM1477537: lsm4 rep 3,1; Arabidopsis thaliana; RNA-Seq SRR1548693:GSM1477538: lsm4 rep 3,2; Arabidopsis thaliana; RNA-Seq AT5G46770.1 Arabidopsis thaliana 0.38 Unknown SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G46780.1 Arabidopsis thaliana 0.32 VQ motif-containing protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G46810.1 Arabidopsis thaliana 0.46 Protein of Unknown Function (DUF239) SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT5G46820.1 Arabidopsis thaliana 0.38 Protein of Unknown Function (DUF239) SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT5G46845.1 Arabidopsis thaliana 0.41 MIR160/MIR160C (MICRORNA160); miRNA SRR578945:GSM1014132: met1_exp1; Arabidopsis thaliana; RNA-Seq SRR446031:Vir.1h.A AT5G46870.1 Arabidopsis thaliana 0.49 RNA-binding (RRM/RBD/RNP motifs) family protein SRR364677:GFP sample AT5G46890.1 Arabidopsis thaliana 0.77 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G46900.1 Arabidopsis thaliana 0.78 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G46915.1 Arabidopsis thaliana 0.30 transcriptional factor B3 family protein SRR1207196:GSM1359148: nga 1; Arabidopsis thaliana; RNA-Seq SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq SRR1207199:GSM1359151: 35S:NGA 1; Arabidopsis thaliana; RNA-Seq AT5G46950.1 Arabidopsis thaliana 0.43 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT5G46960.1 Arabidopsis thaliana 0.58 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT5G46990.1 Arabidopsis thaliana 0.65 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G47000.1 Arabidopsis thaliana 0.91 Peroxidase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G47077.1 Arabidopsis thaliana 0.41 low-molecular-weight cysteine-rich 6 SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT5G47100.1 Arabidopsis thaliana 0.38 calcineurin B-like protein 9 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G47180.2 Arabidopsis thaliana 0.30 Plant VAMP (vesicle-associated membrane protein) family protein SRR501597:GSM938343: WT_seedling_RNAseq_setD; Arabidopsis thaliana; RNA-Seq AT5G47210.3 Arabidopsis thaliana 0.39 Hyaluronan / mRNA binding family SRR609268:GSM1025548: Col-0 rep2; Arabidopsis thaliana; RNA-Seq SRR609269:GSM1025549: mos2-2 rep1; Arabidopsis thaliana; RNA-Seq SRR609270:GSM1025550: mos2-2 rep2; Arabidopsis thaliana; RNA-Seq AT5G47250.1 Arabidopsis thaliana 0.73 LRR and NB-ARC domains-containing disease resistance protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G47306.1 Arabidopsis thaliana 0.60 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G47310.1 Arabidopsis thaliana 0.43 PPPDE putative thiol peptidase family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G47440.1 Arabidopsis thaliana 0.51 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region SRR1144843:WS 7 days on CIM AT5G47470.1 Arabidopsis thaliana 0.73 Nodulin MtN21 /EamA-like transporter family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G47490.1 Arabidopsis thaliana 0.52 RGPR-related ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G47520.1 Arabidopsis thaliana 0.49 RAB GTPase homolog A5A ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G47540.1 Arabidopsis thaliana 0.57 Mo25 family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G47560.1 Arabidopsis thaliana 0.31 tonoplast dicarboxylate transporter SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G47600.1 Arabidopsis thaliana 0.33 HSP20-like chaperones superfamily protein ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT5G47610.1 Arabidopsis thaliana 0.45 RING/U-box superfamily protein SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G47620.2 Arabidopsis thaliana 0.57 RNA-binding (RRM/RBD/RNP motifs) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G47630.2 Arabidopsis thaliana 0.80 mitochondrial acyl carrier protein 3 SRR345564:GSM798298: mRNASeq_skip_rep2 AT5G47670.2 Arabidopsis thaliana 0.31 nuclear factor Y, subunit B6 ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G47710.2 Arabidopsis thaliana 0.46 Calcium-dependent lipid-binding (CaLB domain) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G47790.1 Arabidopsis thaliana 0.40 SMAD/FHA domain-containing protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G47850.1 Arabidopsis thaliana 0.32 CRINKLY4 related 4 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G47900.6 Arabidopsis thaliana 0.32 Protein of unknown function (DUF1624) SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) SRR493101:Untreated Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT5G47960.1 Arabidopsis thaliana 0.36 RAB GTPase homolog A4C SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G47970.1 Arabidopsis thaliana 0.52 Aldolase-type TIM barrel family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G48000.1 Arabidopsis thaliana 0.40 cytochrome P450, family 708, subfamily A, polypeptide 2 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G48000.5 Arabidopsis thaliana 0.34 cytochrome P450, family 708, subfamily A, polypeptide 2 SRR926204:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in Columbia wild-type bio rep 3 AT5G48100.1 Arabidopsis thaliana 0.59 Laccase/Diphenol oxidase family protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT5G48130.1 Arabidopsis thaliana 0.60 Phototropic-responsive NPH3 family protein SRR1144843:WS 7 days on CIM AT5G48140.1 Arabidopsis thaliana 0.94 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G48270.1 Arabidopsis thaliana 0.51 Plant protein of unknown function (DUF868) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G48290.1 Arabidopsis thaliana 0.43 Heavy metal transport/detoxification superfamily protein SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT5G48440.2 Arabidopsis thaliana 0.33 FAD-dependent oxidoreductase family protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G48450.1 Arabidopsis thaliana 0.50 SKU5 similar 3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G48465.1 Arabidopsis thaliana 0.61 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT5G48543.1 Arabidopsis thaliana 0.40 low-molecular-weight cysteine-rich 1 SRR1046859:GSM1287124: Arabidopsis thaliana Kn-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G48560.1 Arabidopsis thaliana 0.31 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G48570.1 Arabidopsis thaliana 0.39 FKBP-type peptidyl-prolyl cis-trans isomerase family protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G48600.2 Arabidopsis thaliana 0.30 structural maintenance of chromosome 3 SRR1144843:WS 7 days on CIM AT5G48670.1 Arabidopsis thaliana 0.32 AGAMOUS-like 80 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G48680.1 Arabidopsis thaliana 0.35 Sterile alpha motif (SAM) domain-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G48710.1 Arabidopsis thaliana 0.54 Ubiquitin-like superfamily protein SRR1257389:GSM1371351: mock Col0 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G48800.1 Arabidopsis thaliana 0.39 Phototropic-responsive NPH3 family protein SRR1144845:be1-3 2 days on SIM AT5G48870.1 Arabidopsis thaliana 0.55 Small nuclear ribonucleoprotein family protein SRR907308:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G48880.1 Arabidopsis thaliana 0.30 peroxisomal 3-keto-acyl-CoA thiolase 2 SRR633730:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633731:GSM1053999: Control: Seed from C24A9 X C24 rep1; Arabidopsis thaliana; RNA-Seq SRR633732:GSM1054000: Control: Seed from C24A9 X C24 rep2; Arabidopsis thaliana; RNA-Seq SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT5G48880.2 Arabidopsis thaliana 0.60 peroxisomal 3-keto-acyl-CoA thiolase 2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G48880.3 Arabidopsis thaliana 0.51 peroxisomal 3-keto-acyl-CoA thiolase 2 SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries AT5G48900.1 Arabidopsis thaliana 0.35 Pectin lyase-like superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G48953.1 Arabidopsis thaliana 0.39 low-molecular-weight cysteine-rich 86 SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G48980.1 Arabidopsis thaliana 0.72 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G49000.1 Arabidopsis thaliana 0.50 Galactose oxidase/kelch repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G49120.1 Arabidopsis thaliana 0.30 Protein of unknown function (DUF581) ERR351333:arabidopsis_thaliana_floral_meristem_atlas ERR351334:arabidopsis_thaliana_floral_meristem_atlas AT5G49130.1 Arabidopsis thaliana 0.55 MATE efflux family protein SRR800753:GSM1111913: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR800754:GSM1111914: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT5G49138.1 Arabidopsis thaliana 0.58 other RNA SRR800753:GSM1111913: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR800754:GSM1111914: Arabidopsis thaliana Col-0 floral bud 12, biological replicate 2; Arabidopsis thaliana; RNA-Seq AT5G49152.1 Arabidopsis thaliana 0.36 other RNA SRR1257401:GSM1371363: mock Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G49215.1 Arabidopsis thaliana 0.52 Pectin lyase-like superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G49334.1 Arabidopsis thaliana 0.60 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G49360.1 Arabidopsis thaliana 0.33 beta-xylosidase 1 SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT5G49390.1 Arabidopsis thaliana 0.67 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G49420.1 Arabidopsis thaliana 0.49 MADS-box transcription factor family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G49470.1 Arabidopsis thaliana 0.57 PAS domain-containing protein tyrosine kinase family protein SRR1652317:atrtf2-2Ho AT5G49525.1 Arabidopsis thaliana 0.37 Unknown SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G49530.1 Arabidopsis thaliana 0.34 SIN-like family protein SRR1652317:atrtf2-2Ho AT5G49620.1 Arabidopsis thaliana 0.32 myb domain protein 78 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq SRR926216:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 1 SRR926217:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 2 SRR926218:RNA-Seq analysis of Arabidopsis thaliana 3-week seedlings (root) by 10uM MeJA treatment in jaz7 bio rep 3 AT5G49680.2 Arabidopsis thaliana 0.51 Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain SRR364677:GFP sample AT5G49710.3 Arabidopsis thaliana 0.41 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G49770.1 Arabidopsis thaliana 0.31 Leucine-rich repeat protein kinase family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G49840.1 Arabidopsis thaliana 0.33 ATP-dependent Clp protease SRR1652315:prp8-7 AT5G49870.1 Arabidopsis thaliana 0.69 Mannose-binding lectin superfamily protein SRR364677:GFP sample AT5G49900.1 Arabidopsis thaliana 0.33 Beta-glucosidase, GBA2 type family protein SRR364677:GFP sample AT5G49920.1 Arabidopsis thaliana 0.95 Octicosapeptide/Phox/Bem1p family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G49930.1 Arabidopsis thaliana 0.40 zinc knuckle (CCHC-type) family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G49970.2 Arabidopsis thaliana 0.40 pyridoxin (pyrodoxamine) 5'-phosphate oxidase SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G50000.1 Arabidopsis thaliana 0.39 Protein kinase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G50030.1 Arabidopsis thaliana 0.91 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G50040.1 Arabidopsis thaliana 0.39 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G50070.1 Arabidopsis thaliana 0.54 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT5G50080.1 Arabidopsis thaliana 0.87 ethylene response factor 110 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G50090.2 Arabidopsis thaliana 0.34 Unknown SRR307070:GSM756822: Col x Ler endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT5G50120.1 Arabidopsis thaliana 0.42 Transducin/WD40 repeat-like superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G50140.1 Arabidopsis thaliana 0.62 Ankyrin repeat family protein SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G50210.1 Arabidopsis thaliana 0.53 quinolinate synthase SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G50290.1 Arabidopsis thaliana 0.41 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G50315.1 Arabidopsis thaliana 0.30 transposable element gene ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G50330.1 Arabidopsis thaliana 0.34 Protein kinase superfamily protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G50340.1 Arabidopsis thaliana 0.56 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases SRR1652315:prp8-7 AT5G50345.1 Arabidopsis thaliana 0.45 Maternally expressed gene (MEG) family protein SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G50360.1 Arabidopsis thaliana 0.42 Unknown SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G50361.1 Arabidopsis thaliana 0.59 Unknown SRR1257405:GSM1371367: mock T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G50375.1 Arabidopsis thaliana 0.38 cyclopropyl isomerase SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G50420.1 Arabidopsis thaliana 0.41 O-fucosyltransferase family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G50430.1 Arabidopsis thaliana 0.40 ubiquitin-conjugating enzyme 33 SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G50450.1 Arabidopsis thaliana 0.35 HCP-like superfamily protein with MYND-type zinc finger SRR518040:GSM954617: H2AZ_HO_2_RNA; Arabidopsis thaliana; RNA-Seq AT5G50470.1 Arabidopsis thaliana 0.31 nuclear factor Y, subunit C7 SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT5G50565.1 Arabidopsis thaliana 0.35 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G50717.1 Arabidopsis thaliana 1.00 MIR405B; miRNA ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT5G50740.2 Arabidopsis thaliana 0.34 Heavy metal transport/detoxification superfamily protein SRR1144843:WS 7 days on CIM AT5G50801.1 Arabidopsis thaliana 0.47 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas AT5G50830.1 Arabidopsis thaliana 0.85 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G50890.1 Arabidopsis thaliana 0.34 alpha/beta-Hydrolases superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G50910.1 Arabidopsis thaliana 0.85 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G51000.1 Arabidopsis thaliana 0.75 F-box and associated interaction domains-containing protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G51030.1 Arabidopsis thaliana 0.45 NAD(P)-binding Rossmann-fold superfamily protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G51040.3 Arabidopsis thaliana 0.67 Unknown SRR392133:GSM852823: mRNA-seq in fcl, technical replicate 4; Arabidopsis thaliana; RNA-Seq AT5G51060.1 Arabidopsis thaliana 0.51 NADPH/respiratory burst oxidase protein D SRR364677:GFP sample AT5G51120.2 Arabidopsis thaliana 0.47 polyadenylate-binding protein 1 SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT5G51174.1 Arabidopsis thaliana 0.70 SNOR30; snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G51180.2 Arabidopsis thaliana 0.49 alpha/beta-Hydrolases superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G51190.1 Arabidopsis thaliana 0.67 Integrase-type DNA-binding superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G51200.1 Arabidopsis thaliana 0.34 Protein of unknown function (DUF3414) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G51220.1 Arabidopsis thaliana 0.49 ubiquinol-cytochrome C chaperone family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G51270.1 Arabidopsis thaliana 0.82 U-box domain-containing protein kinase family protein SRR364677:GFP sample AT5G51330.1 Arabidopsis thaliana 0.59 SWITCH1 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G51420.1 Arabidopsis thaliana 0.92 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G51430.1 Arabidopsis thaliana 0.53 conserved oligomeric Golgi complex component-related / COG complex component-related SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G51440.1 Arabidopsis thaliana 0.45 HSP20-like chaperones superfamily protein SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G51450.1 Arabidopsis thaliana 0.47 RPM1 interacting protein 3 SRR584119:GSM1017160: NMD_MOCK_R1; Arabidopsis thaliana; RNA-Seq AT5G51451.1 Arabidopsis thaliana 0.63 Unknown SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM AT5G51470.1 Arabidopsis thaliana 0.48 Auxin-responsive GH3 family protein SRR1508458:GSM1429679: Col-0 replicate1; Arabidopsis thaliana; RNA-Seq SRR1508459:GSM1429680: Col-0 replicate2; Arabidopsis thaliana; RNA-Seq SRR1508460:GSM1429681: Col-0 replicate3; Arabidopsis thaliana; RNA-Seq SRR1508461:GSM1429682: coryne-3 replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508462:GSM1429683: coryne-3 replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508463:GSM1429684: clavata2-gabi replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508464:GSM1429685: clavata2-gabi replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508465:GSM1429686: clavata2-gabi replicate 3; Arabidopsis thaliana; RNA-Seq SRR1508466:GSM1429688: cle40-2 replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508467:GSM1429691: cle40-2 replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508468:GSM1429693: cle40-2 replicate 3; Arabidopsis thaliana; RNA-Seq AT5G51500.1 Arabidopsis thaliana 0.50 Plant invertase/pectin methylesterase inhibitor superfamily ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G51520.1 Arabidopsis thaliana 0.54 Plant invertase/pectin methylesterase inhibitor superfamily protein SRR364678:nonGFP sample AT5G51620.2 Arabidopsis thaliana 0.50 Uncharacterised protein family (UPF0172) SRR1257397:GSM1371359: mock T474D 10 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G51700.1 Arabidopsis thaliana 0.30 protein binding;zinc ion binding SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G51710.2 Arabidopsis thaliana 0.40 K+ efflux antiporter 5 SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT5G51720.1 Arabidopsis thaliana 0.35 2 iron, 2 sulfur cluster binding SRR518042:GSM954619: H2AZ_WT_1_RNA; Arabidopsis thaliana; RNA-Seq AT5G51730.1 Arabidopsis thaliana 0.31 RNA-binding (RRM/RBD/RNP motifs) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G51830.1 Arabidopsis thaliana 0.75 pfkB-like carbohydrate kinase family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G51840.1 Arabidopsis thaliana 0.37 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G51845.1 Arabidopsis thaliana 0.34 Defensin-like (DEFL) family protein SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G51870.1 Arabidopsis thaliana 0.39 AGAMOUS-like 71 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G51930.1 Arabidopsis thaliana 0.67 Glucose-methanol-choline (GMC) oxidoreductase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G51980.1 Arabidopsis thaliana 0.30 Transducin/WD40 repeat-like superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G52010.1 Arabidopsis thaliana 0.40 C2H2-like zinc finger protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT5G52050.1 Arabidopsis thaliana 0.56 MATE efflux family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G52080.1 Arabidopsis thaliana 0.67 Unknown SRR1180009:GSM1337751: Arabidopsis thaliana Zu-0 X Edi-0 seedling, biological replicate 3; Arabidopsis thaliana; RNA-Seq AT5G52140.1 Arabidopsis thaliana 0.41 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G52200.1 Arabidopsis thaliana 0.38 phosphoprotein phosphatase inhibitors SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G52230.1 Arabidopsis thaliana 0.56 methyl-CPG-binding domain protein 13 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G52230.2 Arabidopsis thaliana 0.38 methyl-CPG-binding domain protein 13 SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G52300.1 Arabidopsis thaliana 0.71 CAP160 protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G52300.2 Arabidopsis thaliana 0.57 CAP160 protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G52340.1 Arabidopsis thaliana 0.33 exocyst subunit exo70 family protein A2 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G52350.1 Arabidopsis thaliana 0.40 exocyst subunit exo70 family protein A3 SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G52360.1 Arabidopsis thaliana 0.85 actin depolymerizing factor 10 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G52390.1 Arabidopsis thaliana 0.85 PAR1 protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G52400.1 Arabidopsis thaliana 0.32 cytochrome P450, family 715, subfamily A, polypeptide 1 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT5G52430.1 Arabidopsis thaliana 0.34 hydroxyproline-rich glycoprotein family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G52440.1 Arabidopsis thaliana 0.32 Bacterial sec-independent translocation protein mttA/Hcf106 SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G52471.1 Arabidopsis thaliana 0.71 U60.1F; snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G52495.1 Arabidopsis thaliana 0.50 pre-tRNA SRR499987:sig6 replicate 1 SRR499988:gun1/sig6 replicate 1 AT5G52570.2 Arabidopsis thaliana 0.43 beta-carotene hydroxylase 2 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G52580.2 Arabidopsis thaliana 0.38 RabGAP/TBC domain-containing protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G52600.1 Arabidopsis thaliana 0.49 myb domain protein 82 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq AT5G52605.1 Arabidopsis thaliana 0.44 Defensin-like (DEFL) family protein SRR493240:Col-0 3-day etiolated seedlings, ethylene treated, biological replicate 1 AT5G52680.1 Arabidopsis thaliana 0.34 Copper transport protein family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G52690.1 Arabidopsis thaliana 0.51 Copper transport protein family SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G52700.1 Arabidopsis thaliana 0.85 Copper transport protein family SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G52710.1 Arabidopsis thaliana 0.40 Copper transport protein family SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G52730.1 Arabidopsis thaliana 0.33 Copper transport protein family SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G52740.1 Arabidopsis thaliana 0.42 Copper transport protein family SRR1578857:GSM1507897: C24 O3 rep1; Arabidopsis thaliana; RNA-Seq SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT5G52750.1 Arabidopsis thaliana 0.47 Heavy metal transport/detoxification superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G52760.1 Arabidopsis thaliana 0.55 Copper transport protein family SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G52797.1 Arabidopsis thaliana 0.75 MIR870a; miRNA SRR1595569:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0 and upf1-5 in plant defense AT5G52800.3 Arabidopsis thaliana 0.31 DNA primases SRR1578859:GSM1507899: C24 O3 rep3; Arabidopsis thaliana; RNA-Seq AT5G52901.1 Arabidopsis thaliana 0.33 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G52930.1 Arabidopsis thaliana 0.63 Protein of unknown function (DUF295) ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G52940.1 Arabidopsis thaliana 0.69 Protein of unknown function (DUF295) ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G52990.1 Arabidopsis thaliana 0.53 SNARE-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G53010.1 Arabidopsis thaliana 0.38 calcium-transporting ATPase, putative SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G53050.2 Arabidopsis thaliana 0.44 alpha/beta-Hydrolases superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G53050.3 Arabidopsis thaliana 0.76 alpha/beta-Hydrolases superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G53120.2 Arabidopsis thaliana 0.36 spermidine synthase 3 SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A AT5G53120.3 Arabidopsis thaliana 0.53 spermidine synthase 3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G53144.1 Arabidopsis thaliana 0.75 Unknown SRR978410:18O at 100mm 1hr AT5G53150.1 Arabidopsis thaliana 0.56 DNAJ heat shock N-terminal domain-containing protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G53160.1 Arabidopsis thaliana 0.36 regulatory components of ABA receptor 3 SRR907287:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G53180.1 Arabidopsis thaliana 0.66 polypyrimidine tract-binding protein 2 SRR584130:GSM1017171: PTB_OE2_R1; Arabidopsis thaliana; RNA-Seq SRR584137:GSM1017178: PTB_OE2_R2; Arabidopsis thaliana; RNA-Seq AT5G53205.1 Arabidopsis thaliana 0.37 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G53210.1 Arabidopsis thaliana 0.85 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1298726:GSM1398479: iSPCH 6h rep1; Arabidopsis thaliana; RNA-Seq SRR1298727:GSM1398480: iSPCH 6h rep2; Arabidopsis thaliana; RNA-Seq SRR1298728:GSM1398481: iSPCH 8h rep1; Arabidopsis thaliana; RNA-Seq SRR1298729:GSM1398482: iSPCH 8h rep2; Arabidopsis thaliana; RNA-Seq AT5G53230.1 Arabidopsis thaliana 0.76 Protein of unknown function (DUF295) SRR1144842:be1-3 7 days on CIM AT5G53240.1 Arabidopsis thaliana 0.51 Protein of unknown function (DUF295) SRR1144842:be1-3 7 days on CIM AT5G53270.1 Arabidopsis thaliana 0.38 Seed maturation protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G53340.2 Arabidopsis thaliana 0.65 Galactosyltransferase family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G53360.1 Arabidopsis thaliana 0.45 TRAF-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G53410.1 Arabidopsis thaliana 0.63 Unknown SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq AT5G53450.1 Arabidopsis thaliana 0.56 OBP3-responsive gene 1 SRR1652315:prp8-7 AT5G53480.1 Arabidopsis thaliana 0.34 ARM repeat superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G53486.1 Arabidopsis thaliana 0.41 Unknown ERR377679:Illumina HiSeq 2500 sequencing AT5G53520.1 Arabidopsis thaliana 0.50 oligopeptide transporter 8 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G53620.2 Arabidopsis thaliana 0.33 Unknown SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G53680.1 Arabidopsis thaliana 0.78 RNA-binding (RRM/RBD/RNP motifs) family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G53690.1 Arabidopsis thaliana 0.64 Unknown SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G53710.1 Arabidopsis thaliana 0.34 Unknown SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G53720.1 Arabidopsis thaliana 0.97 RNA-binding (RRM/RBD/RNP motifs) family protein SRR1257400:GSM1371362: infected T474D 10 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G53730.1 Arabidopsis thaliana 0.31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq AT5G53742.1 Arabidopsis thaliana 0.37 Protein of unknown function (DUF1278) SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G53750.1 Arabidopsis thaliana 0.45 CBS domain-containing protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G53800.1 Arabidopsis thaliana 0.51 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT5G53820.1 Arabidopsis thaliana 0.35 Late embryogenesis abundant protein (LEA) family protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G53830.1 Arabidopsis thaliana 0.34 VQ motif-containing protein SRR1144845:be1-3 2 days on SIM AT5G53890.1 Arabidopsis thaliana 0.31 phytosylfokine-alpha receptor 2 SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G53902.1 Arabidopsis thaliana 0.54 U3B; snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G53905.1 Arabidopsis thaliana 0.30 Unknown SRR1575168:GSM1504378: totalArab_nuc_rep1_DSN; Arabidopsis thaliana; RNA-Seq SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G53920.1 Arabidopsis thaliana 0.44 ribosomal protein L11 methyltransferase-related SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G53930.1 Arabidopsis thaliana 0.37 Unknown SRR1046883:GSM1287148: Arabidopsis thaliana Tsu-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G53970.1 Arabidopsis thaliana 0.42 Tyrosine transaminase family protein SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT5G54020.1 Arabidopsis thaliana 0.40 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G54030.1 Arabidopsis thaliana 0.42 Cysteine/Histidine-rich C1 domain family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G54060.1 Arabidopsis thaliana 0.34 UDP-glucose:flavonoid 3-o-glucosyltransferase SRR847505:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847506:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G54070.1 Arabidopsis thaliana 0.40 heat shock transcription factor A9 SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G54075.1 Arabidopsis thaliana 0.41 U3D; snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G54080.2 Arabidopsis thaliana 0.44 homogentisate 1,2-dioxygenase SRR364677:GFP sample AT5G54095.1 Arabidopsis thaliana 0.91 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G54100.1 Arabidopsis thaliana 0.33 SPFH/Band 7/PHB domain-containing membrane-associated protein family SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G54130.3 Arabidopsis thaliana 0.50 Calcium-binding endonuclease/exonuclease/phosphatase family SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G54150.1 Arabidopsis thaliana 0.85 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G54160.1 Arabidopsis thaliana 0.61 O-methyltransferase 1 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G54165.1 Arabidopsis thaliana 0.44 Unknown SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G54220.1 Arabidopsis thaliana 0.44 Cysteine-rich protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G54230.1 Arabidopsis thaliana 0.35 myb domain protein 49 SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G54240.1 Arabidopsis thaliana 0.86 Protein of unknown function (DUF1223) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G54250.2 Arabidopsis thaliana 0.31 cyclic nucleotide-gated cation channel 4 SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A SRR402994:GSM867674: Col_PAC; Arabidopsis thaliana; RNA-Seq SRR515181:5dpi Pst Col-0, ddc control, mRNA-Seq, run 1, Bioreplicate 1 AT5G54250.3 Arabidopsis thaliana 0.52 cyclic nucleotide-gated cation channel 4 SRR944368:GSM1197430: Salt-3h_nonpolyA; Arabidopsis thaliana; RNA-Seq AT5G54390.1 Arabidopsis thaliana 0.31 HAL2-like SRR446044:Vir.12h.B AT5G54410.1 Arabidopsis thaliana 0.37 Unknown SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508246:GSM1428948: LerxCvi_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G54450.1 Arabidopsis thaliana 0.54 Protein of unknown function (DUF295) SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq AT5G54490.1 Arabidopsis thaliana 0.60 pinoid-binding protein 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G54500.1 Arabidopsis thaliana 0.30 flavodoxin-like quinone reductase 1 SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G54560.1 Arabidopsis thaliana 0.77 Protein of unknown function (DUF295) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G54580.1 Arabidopsis thaliana 0.46 RNA-binding (RRM/RBD/RNP motifs) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G54600.2 Arabidopsis thaliana 0.39 Translation protein SH3-like family protein SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other SRR349698:GSM799867: mRNASeq_ibm1_3; Arabidopsis thaliana; other AT5G54690.1 Arabidopsis thaliana 0.50 galacturonosyltransferase 12 SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G54720.1 Arabidopsis thaliana 0.63 Ankyrin repeat family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G54740.1 Arabidopsis thaliana 0.50 seed storage albumin 5 ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G54760.3 Arabidopsis thaliana 0.31 Translation initiation factor SUI1 family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G54780.1 Arabidopsis thaliana 0.88 Ypt/Rab-GAP domain of gyp1p superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G54810.1 Arabidopsis thaliana 0.35 tryptophan synthase beta-subunit 1 SRR391051:GSM850477: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 1; Arabidopsis thaliana; RNA-Seq SRR391052:GSM850478: Arabidopsis thaliana leaf mRNA 24 hr after Botrytis cinerea infection Rep 2; Arabidopsis thaliana; RNA-Seq AT5G54880.1 Arabidopsis thaliana 0.41 DTW domain-containing protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G54970.1 Arabidopsis thaliana 0.33 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G55010.1 Arabidopsis thaliana 0.55 Unknown SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G55056.1 Arabidopsis thaliana 0.51 Unknown SRR633736:GSM1054003: Control: Seed from C24A9 X C24 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G55060.1 Arabidopsis thaliana 0.37 Unknown SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G55150.1 Arabidopsis thaliana 0.39 Protein of unknown function (DUF295) SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G55180.2 Arabidopsis thaliana 0.57 O-Glycosyl hydrolases family 17 protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G55200.1 Arabidopsis thaliana 0.45 Co-chaperone GrpE family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G55230.2 Arabidopsis thaliana 0.46 microtubule-associated proteins 65-1 SRR392131:GSM852821: mRNA-seq in fcl, technical replicate 2; Arabidopsis thaliana; RNA-Seq AT5G55250.2 Arabidopsis thaliana 0.49 IAA carboxylmethyltransferase 1 SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT5G55270.1 Arabidopsis thaliana 0.37 Protein of unknown function (DUF295) SRR1144842:be1-3 7 days on CIM AT5G55290.1 Arabidopsis thaliana 0.43 ATPase, V0 complex, subunit E ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G55508.1 Arabidopsis thaliana 0.42 Unknown ERR351331:arabidopsis_thaliana_floral_meristem_atlas AT5G55590.1 Arabidopsis thaliana 0.31 Pectin lyase-like superfamily protein SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G55610.1 Arabidopsis thaliana 0.41 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G55630.2 Arabidopsis thaliana 0.40 Outward rectifying potassium channel protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G55660.1 Arabidopsis thaliana 0.33 DEK domain-containing chromatin associated protein SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm SRR068971:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068972:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068973:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068974:GSM607728: Col-WTxLer-WT_full-Endosperm SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm SRR068987:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068988:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068989:GSM607735: Ler-WTxCol-WT_full-Endosperm SRR068990:GSM607735: Ler-WTxCol-WT_full-Endosperm AT5G55690.1 Arabidopsis thaliana 0.35 MADS-box transcription factor family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR388670:GSM847339: WT-Flower-RNAseq-3; Arabidopsis thaliana; RNA-Seq AT5G55750.1 Arabidopsis thaliana 0.35 hydroxyproline-rich glycoprotein family protein SRR1105586:GSM1303959: fae1_11-12_A; Arabidopsis thaliana; RNA-Seq AT5G55810.1 Arabidopsis thaliana 0.45 nicotinate/nicotinamide mononucleotide adenyltransferase SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G55855.1 Arabidopsis thaliana 0.35 Ubiquitin-like superfamily protein SRR1105582:GSM1303955: fae1_7-8_C; Arabidopsis thaliana; RNA-Seq AT5G55930.1 Arabidopsis thaliana 0.94 oligopeptide transporter 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G55980.1 Arabidopsis thaliana 0.92 serine-rich protein-related SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G56020.1 Arabidopsis thaliana 0.39 Got1/Sft2-like vescicle transport protein family SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT5G56030.2 Arabidopsis thaliana 0.54 heat shock protein 81-2 SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G56100.1 Arabidopsis thaliana 0.31 glycine-rich protein / oleosin SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq AT5G56130.1 Arabidopsis thaliana 0.40 Transducin/WD40 repeat-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G56200.1 Arabidopsis thaliana 0.54 C2H2 type zinc finger transcription factor family SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G56260.1 Arabidopsis thaliana 0.47 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 AT5G56310.1 Arabidopsis thaliana 0.35 Pentatricopeptide repeat (PPR) superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G56330.1 Arabidopsis thaliana 0.51 alpha carbonic anhydrase 8 SRR1046847:GSM1287112: Arabidopsis thaliana Bur-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G56350.1 Arabidopsis thaliana 0.34 Pyruvate kinase family protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G56368.1 Arabidopsis thaliana 0.44 Unknown SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G56369.1 Arabidopsis thaliana 0.57 Defensin-like (DEFL) family protein SRR1039921:GSM1276508: CvixCol_endosperm_1_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G56450.1 Arabidopsis thaliana 0.50 Mitochondrial substrate carrier family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G56460.1 Arabidopsis thaliana 0.30 Protein kinase superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G56600.2 Arabidopsis thaliana 0.52 profilin 3 SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G56630.1 Arabidopsis thaliana 0.32 phosphofructokinase 7 SRR364677:GFP sample AT5G56640.1 Arabidopsis thaliana 0.71 myo-inositol oxygenase 5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G56700.1 Arabidopsis thaliana 0.31 FBD / Leucine Rich Repeat domains containing protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039922:GSM1276509: CvixCol_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1039927:GSM1276514: CvixLer_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1055526:An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize AT5G56750.1 Arabidopsis thaliana 0.74 N-MYC downregulated-like 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G56790.1 Arabidopsis thaliana 0.38 Protein kinase superfamily protein SRR1144843:WS 7 days on CIM AT5G56865.1 Arabidopsis thaliana 0.39 Unknown SRR627679:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq AT5G56975.1 Arabidopsis thaliana 1.00 pre-tRNA SRR499987:sig6 replicate 1 AT5G56980.1 Arabidopsis thaliana 0.47 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G56990.1 Arabidopsis thaliana 0.34 Unknown SRR1207197:GSM1359149: nga 2; Arabidopsis thaliana; RNA-Seq AT5G57060.2 Arabidopsis thaliana 0.45 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G57080.1 Arabidopsis thaliana 0.45 Unknown SRR1257401:GSM1371363: mock Col0 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G57170.2 Arabidopsis thaliana 0.56 Tautomerase/MIF superfamily protein SRR349697:GSM799866: mRNASeq_WT_Col_0; Arabidopsis thaliana; other AT5G57181.1 Arabidopsis thaliana 0.35 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT5G57200.1 Arabidopsis thaliana 0.37 ENTH/ANTH/VHS superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G57320.1 Arabidopsis thaliana 0.65 villin, putative SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G57380.1 Arabidopsis thaliana 0.36 Fibronectin type III domain-containing protein SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G57400.1 Arabidopsis thaliana 0.42 Unknown SRR364678:nonGFP sample AT5G57420.1 Arabidopsis thaliana 0.32 indole-3-acetic acid inducible 33 DRR008477:Arabidopsis ibm1-4 mRNA_seq AT5G57500.1 Arabidopsis thaliana 0.41 Galactosyltransferase family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G57510.1 Arabidopsis thaliana 0.48 Unknown ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G57520.1 Arabidopsis thaliana 0.34 zinc finger protein 2 SRR505746:GSM946224: siliques; Arabidopsis thaliana; RNA-Seq SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G57530.1 Arabidopsis thaliana 0.44 xyloglucan endotransglucosylase/hydrolase 12 SRR364677:GFP sample AT5G57535.1 Arabidopsis thaliana 0.48 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G57560.1 Arabidopsis thaliana 0.52 Xyloglucan endotransglucosylase/hydrolase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G57565.4 Arabidopsis thaliana 0.71 Protein kinase superfamily protein SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G57565.5 Arabidopsis thaliana 0.32 Protein kinase superfamily protein SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G57625.1 Arabidopsis thaliana 0.35 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein SRR1260035:P-_hps7_R2 AT5G57660.1 Arabidopsis thaliana 0.31 CONSTANS-like 5 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G57670.2 Arabidopsis thaliana 0.52 Protein kinase superfamily protein SRR477077:GSM912636: bzr1-1D RNA-Seq replicate 1; Arabidopsis thaliana; RNA-Seq SRR477078:GSM912637: bzr1-1D RNA-Seq replicate 2; Arabidopsis thaliana; RNA-Seq SRR402998:GSM867678: bzr1-1D_PAC_PPZ; Arabidopsis thaliana; RNA-Seq SRR515493:GSM951968: bzr1-1D_PAC_PPZ repeat; Arabidopsis thaliana; RNA-Seq AT5G57690.1 Arabidopsis thaliana 0.79 diacylglycerol kinase 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G57700.2 Arabidopsis thaliana 0.43 BNR/Asp-box repeat family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G57730.1 Arabidopsis thaliana 0.93 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G57740.1 Arabidopsis thaliana 0.31 XB3 ortholog 2 in Arabidopsis thaliana ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G57820.1 Arabidopsis thaliana 0.56 zinc ion binding ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G57830.1 Arabidopsis thaliana 0.34 Protein of unknown function, DUF593 SRR364677:GFP sample SRR364678:nonGFP sample SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G57890.1 Arabidopsis thaliana 0.34 Glutamine amidotransferase type 1 family protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G57910.1 Arabidopsis thaliana 0.44 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G57950.1 Arabidopsis thaliana 0.38 26S proteasome regulatory subunit, putative SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G57980.1 Arabidopsis thaliana 0.31 RNA polymerase II fifth largest subunit, C SRR1508458:GSM1429679: Col-0 replicate1; Arabidopsis thaliana; RNA-Seq SRR1508459:GSM1429680: Col-0 replicate2; Arabidopsis thaliana; RNA-Seq SRR1508460:GSM1429681: Col-0 replicate3; Arabidopsis thaliana; RNA-Seq SRR1508461:GSM1429682: coryne-3 replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508462:GSM1429683: coryne-3 replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508463:GSM1429684: clavata2-gabi replicate 1; Arabidopsis thaliana; RNA-Seq SRR1508464:GSM1429685: clavata2-gabi replicate 2; Arabidopsis thaliana; RNA-Seq SRR1508465:GSM1429686: clavata2-gabi replicate 3; Arabidopsis thaliana; RNA-Seq AT5G58010.1 Arabidopsis thaliana 0.59 LJRHL1-like 3 SRR364677:GFP sample AT5G58050.1 Arabidopsis thaliana 0.94 SHV3-like 4 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G58060.2 Arabidopsis thaliana 0.45 SNARE-like superfamily protein SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq AT5G58080.1 Arabidopsis thaliana 0.53 response regulator 18 SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT5G58160.1 Arabidopsis thaliana 0.40 actin binding SRR364677:GFP sample AT5G58170.1 Arabidopsis thaliana 0.95 SHV3-like 5 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G58210.1 Arabidopsis thaliana 0.66 hydroxyproline-rich glycoprotein family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G58290.1 Arabidopsis thaliana 0.66 regulatory particle triple-A ATPase 3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G58310.1 Arabidopsis thaliana 0.34 methyl esterase 18 SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G58320.2 Arabidopsis thaliana 0.57 Kinase interacting (KIP1-like) family protein SRR364677:GFP sample AT5G58370.1 Arabidopsis thaliana 0.32 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR515337:GSM951359: rve8_mock_2; Arabidopsis thaliana; RNA-Seq AT5G58370.2 Arabidopsis thaliana 0.35 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G58380.1 Arabidopsis thaliana 0.53 SOS3-interacting protein 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G58412.1 Arabidopsis thaliana 0.44 Putative membrane lipoprotein SRR1257407:GSM1371369: infected T474D 20 days rep 1; Arabidopsis thaliana; RNA-Seq AT5G58520.1 Arabidopsis thaliana 0.41 Protein kinase superfamily protein SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G58540.3 Arabidopsis thaliana 0.31 Protein kinase superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G58595.1 Arabidopsis thaliana 0.41 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 SRR345564:GSM798298: mRNASeq_skip_rep2 AT5G58600.2 Arabidopsis thaliana 0.43 Plant protein of unknown function (DUF828) SRR069562:GSM608538: Arabidopsis thaliana-spl7-shoot-Copper-sufficient AT5G58610.1 Arabidopsis thaliana 0.30 PHD finger transcription factor, putative SRR584125:GSM1017166: NMD_MOCK_R2; Arabidopsis thaliana; RNA-Seq SRR1144842:be1-3 7 days on CIM SRR1144845:be1-3 2 days on SIM AT5G58620.1 Arabidopsis thaliana 0.34 zinc finger (CCCH-type) family protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G58640.1 Arabidopsis thaliana 0.38 Selenoprotein, Rdx type SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G58750.1 Arabidopsis thaliana 0.30 NAD(P)-binding Rossmann-fold superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G58782.1 Arabidopsis thaliana 0.43 Undecaprenyl pyrophosphate synthetase family protein SRR100209:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100210:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100211:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100212:GSM674847: Female Col-0 x Male Bur-0 RNA SRR100213:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100214:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100215:GSM674848: Female Bur-0 x Male Col-0 RNA SRR100216:GSM674848: Female Bur-0 x Male Col-0 RNA AT5G58910.1 Arabidopsis thaliana 0.34 laccase 16 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G58930.1 Arabidopsis thaliana 0.31 Protein of unknown function (DUF740) SRR068956:GSM607723: Col-dmexLer-WT_Endosperm SRR068957:GSM607723: Col-dmexLer-WT_Endosperm SRR068958:GSM607723: Col-dmexLer-WT_Endosperm SRR068959:GSM607723: Col-dmexLer-WT_Endosperm AT5G58950.1 Arabidopsis thaliana 0.50 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G58960.1 Arabidopsis thaliana 0.36 Plant protein of unknown function (DUF641) SRR1046877:GSM1287142: Arabidopsis thaliana Rsch-4 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G59070.1 Arabidopsis thaliana 0.35 UDP-Glycosyltransferase superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G59090.3 Arabidopsis thaliana 0.44 subtilase 4.12 SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G59100.1 Arabidopsis thaliana 0.52 Subtilisin-like serine endopeptidase family protein SRR1039911:GSM1276498: CvixCvi_endosperm_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G59105.1 Arabidopsis thaliana 0.36 Defensin-like (DEFL) family protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G59110.1 Arabidopsis thaliana 0.86 subtilisin-like serine protease-related SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G59150.1 Arabidopsis thaliana 0.30 RAB GTPase homolog A2D ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G59160.2 Arabidopsis thaliana 0.50 type one serine/threonine protein phosphatase 2 ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G59190.1 Arabidopsis thaliana 0.58 subtilase family protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G59200.1 Arabidopsis thaliana 0.56 Tetratricopeptide repeat (TPR)-like superfamily protein SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G59230.1 Arabidopsis thaliana 0.61 transcription factor-related SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G59290.2 Arabidopsis thaliana 0.46 UDP-glucuronic acid decarboxylase 3 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G59305.1 Arabidopsis thaliana 0.49 Unknown SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G59340.1 Arabidopsis thaliana 0.75 WUSCHEL related homeobox 2 SRR446044:Vir.12h.B AT5G59430.1 Arabidopsis thaliana 0.34 telomeric repeat binding protein 1 SRR513596:5dpi Pst Col-0 mRNA-Seq, run 1, Bioreplicate 2 SRR513597:5dpi Pst Col-0 mRNA-Seq, run 2, Bioreplicate 2 AT5G59440.1 Arabidopsis thaliana 0.35 P-loop containing nucleoside triphosphate hydrolases superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G59450.1 Arabidopsis thaliana 0.44 GRAS family transcription factor SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G59470.2 Arabidopsis thaliana 0.30 Mannose-P-dolichol utilization defect 1 protein SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G59480.2 Arabidopsis thaliana 0.74 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G59505.1 Arabidopsis thaliana 0.48 MIR172E; miRNA SRR634973:GSM1054091: BP12-2 seedling treated with rapamycin_rep2; Arabidopsis; RNA-Seq AT5G59550.1 Arabidopsis thaliana 0.32 zinc finger (C3HC4-type RING finger) family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G59560.2 Arabidopsis thaliana 0.40 sensitivity to red light reduced protein (SRR1) SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G59613.1 Arabidopsis thaliana 0.63 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G59650.1 Arabidopsis thaliana 0.40 Leucine-rich repeat protein kinase family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G59662.1 Arabidopsis thaliana 0.39 other RNA ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G59680.1 Arabidopsis thaliana 0.55 Leucine-rich repeat protein kinase family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G59720.1 Arabidopsis thaliana 0.41 heat shock protein 18.2 SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A AT5G59730.2 Arabidopsis thaliana 0.46 exocyst subunit exo70 family protein H7 SRR1005393:GSM1242382: cmt23_mRNA_rep1; Arabidopsis thaliana; RNA-Seq AT5G59760.1 Arabidopsis thaliana 0.30 Protein of unknown function (DUF1635) SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance SRR921313:GSM1173204: ATH1_WS_S1_rep1; Arabidopsis thaliana; RNA-Seq SRR921314:GSM1173205: ATH1_WS_S1_rep2; Arabidopsis thaliana; RNA-Seq AT5G59930.1 Arabidopsis thaliana 0.82 Cysteine/Histidine-rich C1 domain family protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G59940.1 Arabidopsis thaliana 0.33 Cysteine/Histidine-rich C1 domain family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G60010.1 Arabidopsis thaliana 0.37 ferric reductase-like transmembrane component family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G60060.1 Arabidopsis thaliana 0.43 Protein of unknown function (DUF295) SRR364677:GFP sample AT5G60070.1 Arabidopsis thaliana 0.60 ankyrin repeat family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G60130.2 Arabidopsis thaliana 0.30 AP2/B3-like transcriptional factor family protein SRR633737:GSM1054004: Control: Seed from C24A9 X C24 rep2 single; Arabidopsis thaliana; RNA-Seq AT5G60200.1 Arabidopsis thaliana 0.51 TARGET OF MONOPTEROS 6 SRR1144842:be1-3 7 days on CIM SRR1144843:WS 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT5G60210.1 Arabidopsis thaliana 0.50 ROP interactive partner 5 SRR1144843:WS 7 days on CIM AT5G60210.2 Arabidopsis thaliana 0.34 ROP interactive partner 5 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT5G60230.1 Arabidopsis thaliana 0.41 splicing endonuclease 2 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G60260.1 Arabidopsis thaliana 0.37 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G60270.1 Arabidopsis thaliana 0.31 Concanavalin A-like lectin protein kinase family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G60285.1 Arabidopsis thaliana 0.32 pre-tRNA SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G60350.1 Arabidopsis thaliana 0.50 Unknown SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G60360.3 Arabidopsis thaliana 0.51 aleurain-like protease SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT5G60380.1 Arabidopsis thaliana 0.81 Protein of Unknown Function (DUF239) SRR907284:SAD1 dynamically regulates alternative splicing and stress tolerance AT5G60400.2 Arabidopsis thaliana 0.52 Unknown SRR578946:GSM1014133: met1_exp2; Arabidopsis thaliana; RNA-Seq AT5G60408.1 Arabidopsis thaliana 0.33 MIR391; miRNA SRR627679:GSM1047665: pif134-RNA; Arabidopsis thaliana; RNA-Seq ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas AT5G60410.5 Arabidopsis thaliana 0.33 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G60460.1 Arabidopsis thaliana 0.52 Preprotein translocase Sec, Sec61-beta subunit protein SRR515074:polyA RNA sequencing from 7d old seedlings AT5G60480.1 Arabidopsis thaliana 0.78 homeobox protein 26 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G60490.1 Arabidopsis thaliana 0.38 FASCICLIN-like arabinogalactan-protein 12 SRR764885:GSM1088166: Col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G60520.1 Arabidopsis thaliana 0.52 Late embryogenesis abundant (LEA) protein-related ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G60553.1 Arabidopsis thaliana 0.46 Defensin-like (DEFL) family protein SRR1058113:GSM1297915: at-seed-ler_wt_x_col_osd 1; Arabidopsis thaliana; RNA-Seq SRR1058114:GSM1297916: at-seed-ler_wt_x_col_osd 2; Arabidopsis thaliana; RNA-Seq SRR1058115:GSM1297917: at-seed-ler_wt_x_col_osd 3; Arabidopsis thaliana; RNA-Seq AT5G60580.3 Arabidopsis thaliana 0.56 RING/U-box superfamily protein SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G60590.2 Arabidopsis thaliana 0.32 DHBP synthase RibB-like alpha/beta domain SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G60600.2 Arabidopsis thaliana 0.56 4-hydroxy-3-methylbut-2-enyl diphosphate synthase SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G60615.1 Arabidopsis thaliana 0.90 Defensin-like (DEFL) family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G60650.1 Arabidopsis thaliana 0.31 Unknown SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G60660.1 Arabidopsis thaliana 0.47 plasma membrane intrinsic protein 2;4 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G60680.1 Arabidopsis thaliana 0.31 Protein of unknown function, DUF584 SRR1104136:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis SRR1584463:A CTD phosphatase modulates eIF4AIII nucleocytoplasmic shuttling and nonsense-mediated mRNA decay AT5G60710.1 Arabidopsis thaliana 0.40 Zinc finger (C3HC4-type RING finger) family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G60740.1 Arabidopsis thaliana 0.62 ABC transporter family protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G60770.1 Arabidopsis thaliana 0.66 nitrate transporter 2.4 SRR364677:GFP sample AT5G60800.2 Arabidopsis thaliana 0.38 Heavy metal transport/detoxification superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G60810.1 Arabidopsis thaliana 0.73 root meristem growth factor 1 SRR1144843:WS 7 days on CIM AT5G60850.1 Arabidopsis thaliana 0.51 OBF binding protein 4 SRR446044:Vir.12h.B AT5G60890.1 Arabidopsis thaliana 0.34 myb domain protein 34 SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT5G60900.1 Arabidopsis thaliana 0.31 receptor-like protein kinase 1 SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G60910.1 Arabidopsis thaliana 0.61 AGAMOUS-like 8 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G60910.2 Arabidopsis thaliana 0.43 AGAMOUS-like 8 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G60964.1 Arabidopsis thaliana 0.47 ECA1 gametogenesis related family protein SRR388668:GSM847337: WT-Flower-RNAseq-1; Arabidopsis thaliana; RNA-Seq SRR388669:GSM847338: WT-Flower-RNAseq-2; Arabidopsis thaliana; RNA-Seq AT5G61000.1 Arabidopsis thaliana 0.70 Replication factor-A protein 1-related ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G61030.1 Arabidopsis thaliana 0.30 glycine-rich RNA-binding protein 3 SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo SRR068980:GSM607731: Ler-WTxCol-WT_Embryo SRR068981:GSM607731: Ler-WTxCol-WT_Embryo SRR068982:GSM607731: Ler-WTxCol-WT_Embryo SRR068983:GSM607731: Ler-WTxCol-WT_Embryo AT5G61090.1 Arabidopsis thaliana 0.54 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G61100.1 Arabidopsis thaliana 0.39 Unknown SRR633734:GSM1054001: Control: Seed from ColA9 X Col-0 rep1 single; Arabidopsis thaliana; RNA-Seq AT5G61150.1 Arabidopsis thaliana 0.35 leo1-like family protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT5G61150.2 Arabidopsis thaliana 0.38 leo1-like family protein SRR949992:early shade responses in Arabidopsis adult plants (Col, 4 hr shade) AT5G61240.1 Arabidopsis thaliana 0.43 Leucine-rich repeat (LRR) family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G61270.2 Arabidopsis thaliana 0.40 phytochrome-interacting factor7 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G61320.1 Arabidopsis thaliana 0.33 cytochrome P450, family 89, subfamily A, polypeptide 3 SRR444599:GSM894359: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444600:GSM894360: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444601:GSM894361: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444602:GSM894362: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444595:GSM894355: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444596:GSM894356: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2; Arabidopsis thaliana; RNA-Seq SRR444597:GSM894357: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1; Arabidopsis thaliana; RNA-Seq SRR444598:GSM894358: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2; Arabidopsis thaliana; RNA-Seq AT5G61350.1 Arabidopsis thaliana 0.44 Protein kinase superfamily protein SRR364677:GFP sample AT5G61360.1 Arabidopsis thaliana 0.90 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G61450.1 Arabidopsis thaliana 0.41 P-loop containing nucleoside triphosphate hydrolases superfamily protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G61455.1 Arabidopsis thaliana 0.45 U2.7; snRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G61480.1 Arabidopsis thaliana 0.32 Leucine-rich repeat protein kinase family protein SRR1144842:be1-3 7 days on CIM SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT5G61490.1 Arabidopsis thaliana 0.44 Uncharacterised conserved protein (UCP012943) SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G61495.1 Arabidopsis thaliana 0.35 Unknown SRR1046857:GSM1287122: Arabidopsis thaliana Hi-0 root, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G61530.3 Arabidopsis thaliana 0.30 small G protein family protein / RhoGAP family protein SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G61540.1 Arabidopsis thaliana 0.47 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G61550.1 Arabidopsis thaliana 0.51 U-box domain-containing protein kinase family protein SRR364677:GFP sample AT5G61550.2 Arabidopsis thaliana 0.31 U-box domain-containing protein kinase family protein SRR1260035:P-_hps7_R2 SRR1260038:P-_WT_R1 AT5G61570.1 Arabidopsis thaliana 0.57 Protein kinase superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G61620.1 Arabidopsis thaliana 0.39 myb-like transcription factor family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G61660.1 Arabidopsis thaliana 0.37 glycine-rich protein ERR377679:Illumina HiSeq 2500 sequencin ERR377680:Illumina HiSeq 2500 sequencing ERR377681:Illumina HiSeq 2500 sequencing AT5G61680.1 Arabidopsis thaliana 0.94 Pectin lyase-like superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G61700.1 Arabidopsis thaliana 0.35 ABC2 homolog 16 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G61710.1 Arabidopsis thaliana 0.94 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G61720.1 Arabidopsis thaliana 0.55 Protein of unknown function (DUF1216) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G61835.1 Arabidopsis thaliana 1.00 pre-tRNA SRR499989:gun1/sig6 replicate 2 AT5G61850.1 Arabidopsis thaliana 0.31 floral meristem identity control protein LEAFY (LFY) ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351332:arabidopsis_thaliana_floral_meristem_atlas ERR351335:arabidopsis_thaliana_floral_meristem_atlas AT5G61880.1 Arabidopsis thaliana 0.31 Protein Transporter, Pam16 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G61890.1 Arabidopsis thaliana 0.42 Integrase-type DNA-binding superfamily protein SRR364678:nonGFP sample AT5G61900.1 Arabidopsis thaliana 0.84 Calcium-dependent phospholipid-binding Copine family protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G61900.3 Arabidopsis thaliana 0.31 Calcium-dependent phospholipid-binding Copine family protein SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT5G61910.1 Arabidopsis thaliana 0.80 DCD (Development and Cell Death) domain protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G61910.3 Arabidopsis thaliana 0.44 DCD (Development and Cell Death) domain protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G61910.4 Arabidopsis thaliana 0.74 DCD (Development and Cell Death) domain protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G61920.1 Arabidopsis thaliana 0.56 Unknown ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G61930.1 Arabidopsis thaliana 0.34 Arabidopsis thaliana protein of unknown function (DUF794) SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G61950.1 Arabidopsis thaliana 0.40 Ubiquitin carboxyl-terminal hydrolase-related protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G61960.2 Arabidopsis thaliana 0.54 MEI2-like protein 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G61980.1 Arabidopsis thaliana 0.32 ARF-GAP domain 1 SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G62030.1 Arabidopsis thaliana 0.42 diphthamide synthesis DPH2 family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G62110.1 Arabidopsis thaliana 0.36 Homeodomain-like superfamily protein SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G62165.3 Arabidopsis thaliana 0.34 AGAMOUS-like 42 SRR069566:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR069574:GSM608543: Arabidopsis thaliana-spl7-root-Copper-deficient AT5G62240.1 Arabidopsis thaliana 0.82 Cell cycle regulated microtubule associated protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G62250.1 Arabidopsis thaliana 0.36 microtubule-associated protein 65-9 SRR1046880:GSM1287145: Arabidopsis thaliana Sf-2 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G62310.1 Arabidopsis thaliana 0.79 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein SRR364677:GFP sample AT5G62340.1 Arabidopsis thaliana 0.41 Plant invertase/pectin methylesterase inhibitor superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G62380.1 Arabidopsis thaliana 0.42 NAC-domain protein 101 SRR1144844:WS 2 days on SIM SRR1144845:be1-3 2 days on SIM AT5G62460.1 Arabidopsis thaliana 0.46 RING/FYVE/PHD zinc finger superfamily protein SRR364677:GFP sample AT5G62520.1 Arabidopsis thaliana 0.40 similar to RCD one 5 SRR364677:GFP sample SRR364678:nonGFP sample AT5G62520.2 Arabidopsis thaliana 0.46 similar to RCD one 5 SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G62540.1 Arabidopsis thaliana 0.60 ubiquitin-conjugating enzyme 3 SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G62570.1 Arabidopsis thaliana 0.63 Calmodulin binding protein-like SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G62576.1 Arabidopsis thaliana 0.56 Unknown SRR068965:GSM607726: Col-WTxLer-WT_Embryo AT5G62580.1 Arabidopsis thaliana 0.32 ARM repeat superfamily protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G62610.1 Arabidopsis thaliana 0.48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G62620.2 Arabidopsis thaliana 0.48 Galactosyltransferase family protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G62630.1 Arabidopsis thaliana 0.34 hipl2 protein precursor ERR274309:Salt priming A. thaliana RNA-Seq ERR274308:Salt priming A. thaliana RNA-Seq AT5G62640.1 Arabidopsis thaliana 0.39 proline-rich family protein SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G62650.1 Arabidopsis thaliana 0.38 Tic22-like family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G62750.1 Arabidopsis thaliana 0.34 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G62848.1 Arabidopsis thaliana 0.44 MIR420; miRNA ERR588046:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G62920.1 Arabidopsis thaliana 0.30 response regulator 6 SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G62950.3 Arabidopsis thaliana 0.36 RNA polymerase II, Rpb4, core protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G63040.1 Arabidopsis thaliana 0.35 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq SRR1019222:GSM1252087: edm2-4 RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G63063.1 Arabidopsis thaliana 0.33 Plant thionin family protein SRR1257406:GSM1371368: mock T474D 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G63085.1 Arabidopsis thaliana 0.36 Plant thionin family protein SRR307069:GSM756822: Col x Ler endosperm RNA-seq SRR307070:GSM756822: Col x Ler endosperm RNA-seq SRR307074:GSM756824: Ler x Col endosperm RNA-seq SRR307075:GSM756824: Ler x Col endosperm RNA-seq SRR307076:GSM756824: Ler x Col endosperm RNA-seq AT5G63168.1 Arabidopsis thaliana 1.00 Unknown ERR351332:arabidopsis_thaliana_floral_meristem_atlas AT5G63190.2 Arabidopsis thaliana 0.31 MA3 domain-containing protein SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq AT5G63230.1 Arabidopsis thaliana 0.48 Carbohydrate-binding X8 domain superfamily protein SRR1508243:GSM1428945: CvixCol_endosperm_3_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G63260.1 Arabidopsis thaliana 0.39 Zinc finger C-x8-C-x5-C-x3-H type family protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G63270.1 Arabidopsis thaliana 0.94 RPM1-interacting protein 4 (RIN4) family protein SRR364677:GFP sample AT5G63290.1 Arabidopsis thaliana 0.32 Radical SAM superfamily protein SRR364677:GFP sample AT5G63300.2 Arabidopsis thaliana 0.48 Ribosomal protein S21 family protein SRR364677:GFP sample AT5G63320.1 Arabidopsis thaliana 0.31 nuclear protein X1 SRR364678:nonGFP sample AT5G63320.3 Arabidopsis thaliana 0.33 nuclear protein X1 SRR364678:nonGFP sample AT5G63390.1 Arabidopsis thaliana 0.82 O-fucosyltransferase family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G63470.1 Arabidopsis thaliana 0.34 nuclear factor Y, subunit C4 SRR518041:GSM954618: H2AZ_HO_3_RNA; Arabidopsis thaliana; RNA-Seq AT5G63560.1 Arabidopsis thaliana 0.30 HXXXD-type acyl-transferase family protein SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G63660.1 Arabidopsis thaliana 0.39 Scorpion toxin-like knottin superfamily protein SRR1260038:P-_WT_R1 AT5G63670.2 Arabidopsis thaliana 0.37 SPT4 homolog 2 SRR345563:GSM798297: mRNASeq_skip_rep1 AT5G63715.1 Arabidopsis thaliana 0.40 MIR166/MIR166G; miRNA ERR351331:arabidopsis_thaliana_floral_meristem_atlas ERR351332:arabidopsis_thaliana_floral_meristem_atlas AT5G63740.1 Arabidopsis thaliana 0.90 RING/U-box superfamily protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G63770.2 Arabidopsis thaliana 0.30 diacylglycerol kinase 2 SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq ERR588040:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588044:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G63790.1 Arabidopsis thaliana 0.37 NAC domain containing protein 102 ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G63890.1 Arabidopsis thaliana 0.43 histidinol dehydrogenase SRR627658:GSM1047661: pif5-RNA; Arabidopsis thaliana; RNA-Seq AT5G63941.1 Arabidopsis thaliana 0.39 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G63990.1 Arabidopsis thaliana 0.48 Inositol monophosphatase family protein SRR364677:GFP sample AT5G64040.2 Arabidopsis thaliana 0.51 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) SRR345562:GSM798296: mRNASeq_WT_rep2 AT5G64130.3 Arabidopsis thaliana 0.31 cAMP-regulated phosphoprotein 19-related protein SRR068971:GSM607728: Col-WTxLer-WT_full-Endosperm AT5G64240.1 Arabidopsis thaliana 0.35 metacaspase 3 SRR364678:nonGFP sample ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G64250.2 Arabidopsis thaliana 0.58 Aldolase-type TIM barrel family protein SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G64300.1 Arabidopsis thaliana 0.35 GTP cyclohydrolase II SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G64320.1 Arabidopsis thaliana 0.34 Pentatricopeptide repeat (PPR) superfamily protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G64330.2 Arabidopsis thaliana 0.44 Phototropic-responsive NPH3 family protein SRR1046856:GSM1287121: Arabidopsis thaliana Hi-0 floral bud, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G64395.1 Arabidopsis thaliana 0.43 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G64400.2 Arabidopsis thaliana 0.67 Unknown SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq AT5G64401.1 Arabidopsis thaliana 0.31 Unknown SRR1020622:GSM1254467: WT seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1020624:GSM1254469: larp1 seedling at 38℃; Arabidopsis thaliana; RNA-Seq SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G64410.1 Arabidopsis thaliana 0.32 oligopeptide transporter 4 SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G64450.1 Arabidopsis thaliana 0.32 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G64501.1 Arabidopsis thaliana 0.69 Unknown ERR588048:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G64510.1 Arabidopsis thaliana 0.61 Unknown SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G64520.2 Arabidopsis thaliana 0.39 homolog of X-ray repair cross complementing 2 (XRCC2) SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G64660.1 Arabidopsis thaliana 0.36 CYS, MET, PRO, and GLY protein 2 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G64685.1 Arabidopsis thaliana 0.46 transposable element gene SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G64730.1 Arabidopsis thaliana 0.71 Transducin/WD40 repeat-like superfamily protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G64790.1 Arabidopsis thaliana 0.83 O-Glycosyl hydrolases family 17 protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G64813.1 Arabidopsis thaliana 0.41 Ras-related small GTP-binding family protein ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G64830.2 Arabidopsis thaliana 0.38 programmed cell death 2 C-terminal domain-containing protein SRR1508240:GSM1428942: LerxCol_endosperm_5_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508245:GSM1428947: CvixLer_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G64870.1 Arabidopsis thaliana 0.53 SPFH/Band 7/PHB domain-containing membrane-associated protein family SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G64890.1 Arabidopsis thaliana 0.37 elicitor peptide 2 precursor SRR1104135:Genome-wide Analysis of Alternative Splicing of pre-mRNA under Salt Stress in Arabidopsis AT5G64960.1 Arabidopsis thaliana 0.47 cyclin dependent kinase group C2 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT5G64960.2 Arabidopsis thaliana 0.75 cyclin dependent kinase group C2 SRR1652315:prp8-7 AT5G65000.1 Arabidopsis thaliana 0.40 Nucleotide-sugar transporter family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G65010.2 Arabidopsis thaliana 0.48 asparagine synthetase 2 SRR609269:GSM1025549: mos2-2 rep1; Arabidopsis thaliana; RNA-Seq SRR1013884:responses to BL AT5G65015.1 Arabidopsis thaliana 0.41 pre-tRNA SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq AT5G65060.2 Arabidopsis thaliana 0.48 K-box region and MADS-box transcription factor family protein SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G65090.1 Arabidopsis thaliana 0.70 DNAse I-like superfamily protein SRR364677:GFP sample AT5G65100.1 Arabidopsis thaliana 0.68 Ethylene insensitive 3 family protein SRR364677:GFP sample AT5G65110.1 Arabidopsis thaliana 0.55 acyl-CoA oxidase 2 SRR837534:Transcriptome of pin6-2 and myb57-2 in Arabidopsis thaliana nectaries SRR837535:Transcriptome of myb57-2 in Arabidopsis thaliana nectaries SRR837536:Transcriptome of pin6-2 in Arabidopsis thaliana nectaries AT5G65140.1 Arabidopsis thaliana 0.56 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein SRR401413:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401414:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq SRR401415:GSM865212: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1; Arabidopsis thaliana; RNA-Seq AT5G65160.1 Arabidopsis thaliana 0.45 tetratricopeptide repeat (TPR)-containing protein SRR364677:GFP sample AT5G65166.1 Arabidopsis thaliana 0.58 Unknown SRR633727:GSM1053997: Control: Seed from ColA9 X Col-0 rep1; Arabidopsis thaliana; RNA-Seq AT5G65170.1 Arabidopsis thaliana 0.32 VQ motif-containing protein SRR1144842:be1-3 7 days on CIM AT5G65200.1 Arabidopsis thaliana 0.33 plant U-box 38 SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G65207.1 Arabidopsis thaliana 0.47 Unknown SRR578940:GSM1014127: ddm1_drd1; Arabidopsis thaliana; RNA-Seq SRR578944:GSM1014131: drd1_exp2; Arabidopsis thaliana; RNA-Seq AT5G65210.2 Arabidopsis thaliana 0.48 bZIP transcription factor family protein SRR314817:GSM764081: Can_0_root_validation_rep1 AT5G65210.3 Arabidopsis thaliana 0.44 bZIP transcription factor family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq SRR631035:GSM1053066: High Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G65250.1 Arabidopsis thaliana 0.37 Unknown SRR1019221:GSM1252086: col RNA-seq; Arabidopsis thaliana; RNA-Seq AT5G65290.1 Arabidopsis thaliana 0.39 LMBR1-like membrane protein SRR364677:GFP sample AT5G65320.1 Arabidopsis thaliana 0.60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein SRR1144842:be1-3 7 days on CIM AT5G65330.1 Arabidopsis thaliana 0.78 AGAMOUS-like 78 SRR1144842:be1-3 7 days on CIM AT5G65420.2 Arabidopsis thaliana 0.47 CYCLIN D4;1 SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G65445.1 Arabidopsis thaliana 0.32 pre-tRNA SRR671947:GSM1077433: Root_polyA_KCl_Control_rep2; Arabidopsis thaliana; RNA-Seq SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT5G65530.1 Arabidopsis thaliana 0.74 Protein kinase superfamily protein SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G65683.1 Arabidopsis thaliana 0.54 Zinc finger (C3HC4-type RING finger) family protein SRR364678:nonGFP sample AT5G65690.1 Arabidopsis thaliana 0.30 phosphoenolpyruvate carboxykinase 2 SRR364677:GFP sample AT5G65740.1 Arabidopsis thaliana 0.33 zinc ion binding SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. AT5G65740.3 Arabidopsis thaliana 0.53 zinc ion binding SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G65770.2 Arabidopsis thaliana 0.31 little nuclei4 SRR863548:GSM1145335: Col-0 mRNA-Seq A; Arabidopsis thaliana; RNA-Seq SRR863549:GSM1145336: Col-0 mRNA-Seq B; Arabidopsis thaliana; RNA-Seq AT5G65810.1 Arabidopsis thaliana 0.39 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G65860.1 Arabidopsis thaliana 0.73 ankyrin repeat family protein SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G65910.1 Arabidopsis thaliana 0.37 BSD domain-containing protein ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G65920.1 Arabidopsis thaliana 0.42 ARM repeat superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G65930.2 Arabidopsis thaliana 0.75 kinesin-like calmodulin-binding protein (ZWICHEL) SRR364677:GFP sample AT5G65980.1 Arabidopsis thaliana 0.56 Auxin efflux carrier family protein SRR631034:GSM1053065: Low Mg2+ treatment; Arabidopsis thaliana; RNA-Seq AT5G66000.1 Arabidopsis thaliana 0.36 Unknown ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G66045.1 Arabidopsis thaliana 0.51 MIR170; miRNA SRR671948:GSM1077434: Root_polyA_KNO3_Treatment_rep1; Arabidopsis thaliana; RNA-Seq AT5G66050.1 Arabidopsis thaliana 0.33 Wound-responsive family protein SRR364677:GFP sample AT5G66050.2 Arabidopsis thaliana 0.38 Wound-responsive family protein SRR364677:GFP sample SRR364678:nonGFP sample AT5G66060.2 Arabidopsis thaliana 0.67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein SRR578943:GSM1014130: drd1_exp1; Arabidopsis thaliana; RNA-Seq AT5G66090.1 Arabidopsis thaliana 0.38 Unknown SRR068965:GSM607726: Col-WTxLer-WT_Embryo SRR068966:GSM607726: Col-WTxLer-WT_Embryo SRR068967:GSM607726: Col-WTxLer-WT_Embryo AT5G66100.1 Arabidopsis thaliana 0.47 winged-helix DNA-binding transcription factor family protein ERR588039:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588041:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts ERR588047:Illumina HiSeq 2500 paired end sequencing; RNA-Seq of Arabidopsis thaliana developing siliques and seeds with temperature shifts AT5G66130.1 Arabidopsis thaliana 0.39 RADIATION SENSITIVE 17 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66150.1 Arabidopsis thaliana 0.69 Glycosyl hydrolase family 38 protein SRR068975:GSM607729: Ler-fiexCol-WT_Endosperm SRR068976:GSM607729: Ler-fiexCol-WT_Endosperm SRR068977:GSM607729: Ler-fiexCol-WT_Endosperm AT5G66170.1 Arabidopsis thaliana 0.70 sulfurtransferase 18 SRR578948:GSM1014135: wt_exp2; Arabidopsis thaliana; RNA-Seq AT5G66170.3 Arabidopsis thaliana 0.33 sulfurtransferase 18 SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq AT5G66210.1 Arabidopsis thaliana 0.39 calcium-dependent protein kinase 28 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66210.2 Arabidopsis thaliana 0.56 calcium-dependent protein kinase 28 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66211.1 Arabidopsis thaliana 0.68 Unknown SRR069565:GSM608540: Arabidopsis thaliana-WT-root-Copper-sufficient AT5G66250.4 Arabidopsis thaliana 0.83 kinectin-related SRR069570:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient AT5G66320.1 Arabidopsis thaliana 0.32 GATA transcription factor 5 SRR518039:GSM954616: H2AZ_HO_1_RNA; Arabidopsis thaliana; RNA-Seq AT5G66360.2 Arabidopsis thaliana 0.37 Ribosomal RNA adenine dimethylase family protein ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G66390.1 Arabidopsis thaliana 0.31 Peroxidase superfamily protein SRR1261351:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G66400.1 Arabidopsis thaliana 0.80 Dehydrin family protein SRR921315:GSM1173206: ATH1_WS_S3_rep1; Arabidopsis thaliana; RNA-Seq SRR921316:GSM1173207: ATH1_WS_S3_rep2; Arabidopsis thaliana; RNA-Seq AT5G66450.1 Arabidopsis thaliana 0.41 Phosphatidic acid phosphatase (PAP2) family protein SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ERR229832:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G66455.1 Arabidopsis thaliana 0.48 Unknown SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq AT5G66480.1 Arabidopsis thaliana 0.48 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G66530.2 Arabidopsis thaliana 0.69 Galactose mutarotase-like superfamily protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G66562.1 Arabidopsis thaliana 0.52 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT5G66564.1 Arabidopsis thaliana 0.34 snoRNA SRR345563:GSM798297: mRNASeq_skip_rep1 AT5G66567.1 Arabidopsis thaliana 0.75 snoRNA SRR1503852:GSM1423194: totalArab_nuc_rep4_dsRNase_noprotein; Arabidopsis thaliana; RNA-Seq SRR1503853:GSM1423195: totalArab_nuc_rep4_dsRNase_protein; Arabidopsis thaliana; RNA-Seq AT5G66580.1 Arabidopsis thaliana 0.59 Unknown ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G66590.1 Arabidopsis thaliana 0.63 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein ERR229852:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G66600.1 Arabidopsis thaliana 0.52 Protein of unknown function, DUF547 SRR1144843:WS 7 days on CIM AT5G66607.1 Arabidopsis thaliana 0.47 Unknown SRR1652316:atrtf2-2He SRR1652317:atrtf2-2Ho AT5G66610.1 Arabidopsis thaliana 0.42 DA1-related protein 7 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G66620.1 Arabidopsis thaliana 0.62 DA1-related protein 6 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66630.1 Arabidopsis thaliana 0.37 DA1-related protein 5 SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66631.1 Arabidopsis thaliana 0.63 Tetratricopeptide repeat (TPR)-like superfamily protein SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66640.1 Arabidopsis thaliana 0.69 DA1-related protein 3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66640.2 Arabidopsis thaliana 0.67 DA1-related protein 3 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66650.1 Arabidopsis thaliana 0.42 Protein of unknown function (DUF607) SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66675.1 Arabidopsis thaliana 0.54 Protein of unknown function (DUF677) SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G66700.1 Arabidopsis thaliana 0.45 homeobox 53 SRR1144843:WS 7 days on CIM AT5G66710.1 Arabidopsis thaliana 0.36 Protein kinase superfamily protein SRR1508238:GSM1428940: LerxCol_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq SRR1508239:GSM1428941: ColxLer_endosperm_4_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G66740.1 Arabidopsis thaliana 0.62 Protein of unknown function (DUF620) SRR847501:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing SRR847502:RNA-Seq of Arabidopsis pollen uncovers novel transcription and alternative splicing AT5G66800.1 Arabidopsis thaliana 0.32 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq AT5G66810.1 Arabidopsis thaliana 0.32 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq SRR584124:GSM1017165: NMD_UPF1UPF3_R2; Arabidopsis thaliana; RNA-Seq AT5G66890.1 Arabidopsis thaliana 0.33 Leucine-rich repeat (LRR) family protein SRR1578865:GSM1507905: Te O3 rep3; Arabidopsis thaliana; RNA-Seq SRR1578871:GSM1507911: CT101 O3 rep3; Arabidopsis thaliana; RNA-Seq AT5G66980.1 Arabidopsis thaliana 0.57 AP2/B3-like transcriptional factor family protein SRR1508244:GSM1428946: LerxCvi_endosperm_2_mRNASeq; Arabidopsis thaliana; RNA-Seq AT5G67030.2 Arabidopsis thaliana 0.34 zeaxanthin epoxidase (ZEP) (ABA1) SRR518043:GSM954620: H2AZ_WT_2_RNA; Arabidopsis thaliana; RNA-Seq AT5G67040.1 Arabidopsis thaliana 0.46 Protein of unknown function (DUF295) SRR1046858:GSM1287123: Arabidopsis thaliana Hi-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq AT5G67170.2 Arabidopsis thaliana 0.52 SEC-C motif-containing protein / OTU-like cysteine protease family protein SRR1144843:WS 7 days on CIM AT5G67210.1 Arabidopsis thaliana 0.35 Protein of unknown function (DUF579) SRR446028:Mock.1h.B AT5G67245.1 Arabidopsis thaliana 0.32 Unknown SRR584118:GSM1017159: NMD_UPF1UPF3_R1; Arabidopsis thaliana; RNA-Seq AT5G67250.1 Arabidopsis thaliana 0.41 SKP1/ASK1-interacting protein 2 SRR068968:GSM607727: Col-WTxLer-WT_Endosperm SRR068969:GSM607727: Col-WTxLer-WT_Endosperm SRR068970:GSM607727: Col-WTxLer-WT_Endosperm SRR068984:GSM607732: Ler-WTxCol-WT_Endosperm SRR068985:GSM607732: Ler-WTxCol-WT_Endosperm SRR068986:GSM607732: Ler-WTxCol-WT_Endosperm AT5G67300.1 Arabidopsis thaliana 0.57 myb domain protein r1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G67410.1 Arabidopsis thaliana 0.56 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G67430.1 Arabidopsis thaliana 0.49 Acyl-CoA N-acyltransferases (NAT) superfamily protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq AT5G67440.2 Arabidopsis thaliana 0.73 Phototropic-responsive NPH3 family protein ERR229846:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G67450.1 Arabidopsis thaliana 0.67 zinc-finger protein 1 SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq AT5G67480.1 Arabidopsis thaliana 0.46 BTB and TAZ domain protein 4 SRR446044:Vir.12h.B AT5G67500.2 Arabidopsis thaliana 0.62 voltage dependent anion channel 2 SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape AT5G67520.1 Arabidopsis thaliana 0.38 adenosine-5'-phosphosulfate (APS) kinase 4 SRR364677:GFP sample AT5G67590.1 Arabidopsis thaliana 0.32 NADH-ubiquinone oxidoreductase-related ERR229827:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root ERR229841:Single-cell RNA-seq for pGL2 and QC cells from the Arabidopsis thaliana root AT5G67600.1 Arabidopsis thaliana 0.56 Unknown SRR1261509:Transcriptome analysis of Arabidopsis thaliana primary root tips under arsenite stress AT5G67610.2 Arabidopsis thaliana 0.30 Uncharacterized conserved protein (DUF2215) SRR069571:GSM608542: Arabidopsis thaliana-spl7-root-Copper-sufficient SRR1257404:GSM1371366: infected Col0 20 days rep 2; Arabidopsis thaliana; RNA-Seq AT5G67640.1 Arabidopsis thaliana 0.36 Unknown SRR584120:GSM1017161: NMD_CHX_R1; Arabidopsis thaliana; RNA-Seq SRR584126:GSM1017167: NMD_CHX_R2; Arabidopsis thaliana; RNA-Seq ATCG00020.1 Arabidopsis thaliana 0.45 photosystem II reaction center protein A SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq SRR352212:Col-0 replicate 1 ATCG00030.1 Arabidopsis thaliana 0.35 Unknown SRR1575156:Analysis of Unproductive Alternative Splicing in Arabidopsis thaliana using Col-0, upf1-5, and lba1 under heat stress. SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq ATCG00100.1 Arabidopsis thaliana 0.32 Unknown SRR527167:Col-0 on geldanamycin replicate2 ATCG00110.1 Arabidopsis thaliana 0.36 Unknown SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq ATCG00240.1 Arabidopsis thaliana 0.75 Unknown SRR527167:Col-0 on geldanamycin replicate2 ATCG00260.1 Arabidopsis thaliana 0.36 Unknown SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq ATCG00270.1 Arabidopsis thaliana 0.53 photosystem II reaction center protein D SRR1055447:An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize SRR1055526:An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize ATCG00310.1 Arabidopsis thaliana 0.34 Unknown SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 ATCG00320.1 Arabidopsis thaliana 0.49 Unknown SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 ATCG00340.1 Arabidopsis thaliana 0.33 Photosystem I, PsaA/PsaB protein SRR1055526:An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize ATCG00370.1 Arabidopsis thaliana 0.44 Unknown SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 ATCG00450.1 Arabidopsis thaliana 0.33 Unknown SRR527167:Col-0 on geldanamycin replicate2 ATCG00460.1 Arabidopsis thaliana 0.54 Unknown SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR652151:GSM1068666: mRNASS-L4h; Arabidopsis thaliana; RNA-Seq ATCG00470.1 Arabidopsis thaliana 0.65 ATP synthase epsilon chain SRR921404:GSM1173285: Rep2_Ws-2_C321A-2hr.fq; Arabidopsis thaliana; RNA-Seq ATCG00510.1 Arabidopsis thaliana 0.60 photsystem I subunit I SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A ATCG00590.1 Arabidopsis thaliana 0.43 electron carriers SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq ATCG00600.1 Arabidopsis thaliana 0.46 PETG SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A ATCG00610.1 Arabidopsis thaliana 0.44 Unknown SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 ATCG00620.1 Arabidopsis thaliana 0.72 Unknown SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 ATCG00680.1 Arabidopsis thaliana 0.41 photosystem II reaction center protein B SRR1055526:An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize ATCG00690.1 Arabidopsis thaliana 0.63 photosystem II reaction center protein T SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A SRR1004833:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 30 minutes Replicate A ATCG00700.1 Arabidopsis thaliana 0.48 photosystem II reaction center protein N SRR1055447:An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize ATCG00720.1 Arabidopsis thaliana 0.31 photosynthetic electron transfer B SRR1055526:An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize ATCG00730.1 Arabidopsis thaliana 0.40 photosynthetic electron transfer D SRR1055526:An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize ATCG00820.1 Arabidopsis thaliana 0.32 ribosomal protein S19 SRR493042:GSM925650: crh6-1 mRNA EMS batch 1; Arabidopsis thaliana; RNA-Seq ATCG00870.1 Arabidopsis thaliana 0.89 Protein precursor Ycf15, putative, chloroplast SRR1257394:GSM1371356: mock NIK 10 days rep 2; Arabidopsis thaliana; RNA-Seq ATCG00880.1 Arabidopsis thaliana 0.50 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A ATCG00910.1 Arabidopsis thaliana 0.62 Unknown SRR499983:col-0 replicate 1 SRR499986:gun1 replicate 1 ATCG00930.1 Arabidopsis thaliana 0.48 Unknown SRR499986:gun1 replicate 1 ATCG00940.1 Arabidopsis thaliana 0.48 Unknown SRR499986:gun1 replicate 1 ATCG00950.1 Arabidopsis thaliana 0.33 Unknown SRR068980:GSM607731: Ler-WTxCol-WT_Embryo ATCG00960.1 Arabidopsis thaliana 0.33 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATCG00970.1 Arabidopsis thaliana 0.66 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATCG00990.1 Arabidopsis thaliana 0.38 Unknown SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq ERR351334:arabidopsis_thaliana_floral_meristem_atlas ATCG01010.1 Arabidopsis thaliana 0.50 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein SRR1192255:GSM1347943: pad4 rep1; Arabidopsis thaliana; RNA-Seq SRR1192256:GSM1347944: pad4 rep2; Arabidopsis thaliana; RNA-Seq SRR1192257:GSM1347945: pad4 rep3; Arabidopsis thaliana; RNA-Seq SRR1192258:GSM1347946: smg7 pad4 rep 1; Arabidopsis thaliana; RNA-Seq SRR1192259:GSM1347947: smg7 pad4 rep 2; Arabidopsis thaliana; RNA-Seq SRR1192260:GSM1347948: smg7 pad4 rep 3; Arabidopsis thaliana; RNA-Seq ATCG01020.1 Arabidopsis thaliana 0.36 ribosomal protein L32 SRR764886:GSM1088167: rdm16-2 RNA-seq; Arabidopsis thaliana; RNA-Seq ATCG01030.1 Arabidopsis thaliana 0.66 Unknown SRR514999:GSM736442: At_mRNASeq ATCG01070.1 Arabidopsis thaliana 0.44 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SRR1192255:GSM1347943: pad4 rep1; Arabidopsis thaliana; RNA-Seq SRR1192256:GSM1347944: pad4 rep2; Arabidopsis thaliana; RNA-Seq SRR1192257:GSM1347945: pad4 rep3; Arabidopsis thaliana; RNA-Seq SRR1192258:GSM1347946: smg7 pad4 rep 1; Arabidopsis thaliana; RNA-Seq SRR1192259:GSM1347947: smg7 pad4 rep 2; Arabidopsis thaliana; RNA-Seq SRR1192260:GSM1347948: smg7 pad4 rep 3; Arabidopsis thaliana; RNA-Seq ATCG01100.1 Arabidopsis thaliana 0.48 NADH dehydrogenase family protein SRR1192255:GSM1347943: pad4 rep1; Arabidopsis thaliana; RNA-Seq SRR1192256:GSM1347944: pad4 rep2; Arabidopsis thaliana; RNA-Seq SRR1192257:GSM1347945: pad4 rep3; Arabidopsis thaliana; RNA-Seq SRR1192258:GSM1347946: smg7 pad4 rep 1; Arabidopsis thaliana; RNA-Seq SRR1192259:GSM1347947: smg7 pad4 rep 2; Arabidopsis thaliana; RNA-Seq SRR1192260:GSM1347948: smg7 pad4 rep 3; Arabidopsis thaliana; RNA-Seq ATCG01140.1 Arabidopsis thaliana 1.00 Unknown SRR499986:gun1 replicate 1 ATCG01150.1 Arabidopsis thaliana 0.67 Unknown SRR514999:GSM736442: At_mRNASeq ATCG01160.1 Arabidopsis thaliana 0.35 Unknown SRR446033:Mock.6h.A ATCG01170.1 Arabidopsis thaliana 0.43 Unknown SRR527167:Col-0 on geldanamycin replicate2 SRR446041:Avr.12h.A ATCG01180.1 Arabidopsis thaliana 0.58 Unknown SRR068980:GSM607731: Ler-WTxCol-WT_Embryo ATCG01190.1 Arabidopsis thaliana 0.36 Unknown SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq ATCG01200.1 Arabidopsis thaliana 0.37 Unknown SRR527175:nrpe1 replicate2 SRR1503849:GSM1423191: totalArab_nuc_rep3_dsRNase_protein; Arabidopsis thaliana; RNA-Seq SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq SRR514999:GSM736442: At_mRNASeq ATCG01220.1 Arabidopsis thaliana 0.66 Unknown ERR351333:arabidopsis_thaliana_floral_meristem_atlas ATCG01230.1 Arabidopsis thaliana 0.37 ribosomal protein S12B SRR1004832:tanorexia-1 Transcriptome Profiling tnr-1 Low Light Control Replicate A ATCG01240.1 Arabidopsis thaliana 0.74 ribosomal protein S7 SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATCG01260.1 Arabidopsis thaliana 0.36 Unknown SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A ATCG01290.1 Arabidopsis thaliana 1.00 Unknown SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq ATMG00030.1 Arabidopsis thaliana 0.35 Unknown SRR944368:GSM1197430: Salt-3h_nonpolyA; Arabidopsis thaliana; RNA-Seq SRR944366:GSM1197428: Heat-3h_nonpolyA; Arabidopsis thaliana; RNA-Seq SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq SRR944365:GSM1197427: Cold-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq ATMG00040.1 Arabidopsis thaliana 0.56 ATP synthase subunit C family protein SRR578942:GSM1014129: ddm1_exp2; Arabidopsis thaliana; RNA-Seq ATMG00050.1 Arabidopsis thaliana 0.49 Unknown SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A ATMG00080.1 Arabidopsis thaliana 0.35 ribosomal protein L16 SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATMG00120.1 Arabidopsis thaliana 0.30 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq SRR578947:GSM1014134: wt_exp1; Arabidopsis thaliana; RNA-Seq ATMG00140.1 Arabidopsis thaliana 0.54 Unknown SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq ATMG00150.1 Arabidopsis thaliana 0.32 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATMG00190.1 Arabidopsis thaliana 0.33 Unknown SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049787:GSM1289368: DS21955; Arabidopsis thaliana; RNA-Seq ATMG00280.1 Arabidopsis thaliana 0.93 Ribulose bisphosphate carboxylase large chain, catalytic domain SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATMG00285.1 Arabidopsis thaliana 0.30 NADH dehydrogenase 2A SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ATMG00410.1 Arabidopsis thaliana 0.31 ATPase subunit 6-1 SRR1049785:GSM1289366: DS21953; Arabidopsis thaliana; RNA-Seq SRR1049783:GSM1289364: DS21956; Arabidopsis thaliana; RNA-Seq SRR1049784:GSM1289365: DS21952; Arabidopsis thaliana; RNA-Seq SRR1049786:GSM1289367: DS21954; Arabidopsis thaliana; RNA-Seq SRR1049788:GSM1289369: DS21959; Arabidopsis thaliana; RNA-Seq SRR1192258:GSM1347946: smg7 pad4 rep 1; Arabidopsis thaliana; RNA-Seq SRR1192259:GSM1347947: smg7 pad4 rep 2; Arabidopsis thaliana; RNA-Seq SRR1192260:GSM1347948: smg7 pad4 rep 3; Arabidopsis thaliana; RNA-Seq ATMG00450.1 Arabidopsis thaliana 0.67 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATMG00470.1 Arabidopsis thaliana 0.58 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATMG00680.1 Arabidopsis thaliana 0.70 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATMG00710.1 Arabidopsis thaliana 0.58 Polynucleotidyl transferase, ribonuclease H-like superfamily protein SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATMG00800.1 Arabidopsis thaliana 0.96 Unknown SRR499985:col-0 replicate 2 SRR499986:gun1 replicate 1 ATMG00810.1 Arabidopsis thaliana 0.62 DNA/RNA polymerases superfamily protein SRR944367:GSM1197429: Heat-12h_nonpolyA; Arabidopsis thaliana; RNA-Seq ATMG00890.1 Arabidopsis thaliana 0.41 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATMG01030.1 Arabidopsis thaliana 0.58 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq ATMG01050.1 Arabidopsis thaliana 0.33 Unknown SRR944362:GSM1197424: Tissue_mix_total; Arabidopsis thaliana; RNA-Seq SRR1004830:tanorexia-1 Transcriptome Profiling E2 High-Light 2 hours Replicate A SRR1004834:tanorexia-1 Transcriptome Profiling tnr-1 High-Light 2 hours Replicate A ATMG01320.1 Arabidopsis thaliana 0.31 NADH dehydrogenase 2B SRR360147:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360152:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360153:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360154:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape SRR360205:Illumina RNA-Seq of Arabidopsis Col-0 to determine Alternative splicing landscape ATMG01340.1 Arabidopsis thaliana 0.81 Unknown SRR499983:col-0 replicate 1 SRR499985:col-0 replicate 2 SRR499989:gun1/sig6 replicate 2 ATMG01380.1 Arabidopsis thaliana 0.42 Unknown SRR345561:GSM798295: mRNASeq_WT_rep1 ATMG01410.1 Arabidopsis thaliana 0.30 open reading frame 204 ERR351335:arabidopsis_thaliana_floral_meristem_atlas ERR351333:arabidopsis_thaliana_floral_meristem_atlas