Conditions

The list of conditions (e.g. Tissue, Treatment, Stage, Genetic background and Genetic modification) in which specifically expressed genes were found with a threshold Δdmax.

In the keyword search for experimental conditions search on the top page, these words promise one or more hits.

Threshold

Link to each species


Arabidopsis thaliana

Tissue

  • non-hair root epidermal cell
  • leaf
  • flower meristem
  • inflorescence meristem
  • seed
  • fruit
  • endosperm
  • shoot system
  • root
  • rosette leaf
  • plant embryo
  • flower bud
  • whole plant
  • root hair cell
  • receptacle
  • nectary
  • flower
  • guard cell
  • pollen
  • hypocotyl
  • carpel
  • primary root tip
  • root tip

Treatment

  • control treatment
  • copper nutrient regimen
  • limited iron regimen
  • Ascomycota treatment
  • mineral salt treatment
  • Pseudomonas syringae plant treatment
  • organic chemical treatment
  • salicylic acid treatment
  • continuous dark (no light) regimen
  • antibiotic treatment
  • limited magnesium regimen
  • magnesium nutrient regimen
  • continuous light regimen
  • limited nitrogen regimen
  • nitrogen macronutrient regimen
  • benzyladenine treatment
  • sodium chloride regimen
  • drought environment
  • Pseudomonas fluorescens
  • cold air temperature regimen
  • warm/hot air temperature regimen
  • day light intensity
  • low light intensity regimen
  • high light intensity regimen
  • long day length regimen
  • in vitro growth medium
  • limited phosphate treatment
  • virus plant treatment
  • inorganic cation treatment
  • formaldehyde
  • ozone treatment

Stage

  • unopened

Genetic background

  • Columbia
  • Landsberg
  • Columbia x Landsberg
  • Landsberg x Columbia
  • Columbia x Burren
  • Burren x Columbia
  • Canary Islands
  • Landsberg x C24
  • C24 x Landsberg
  • ColA9 x Columbia
  • C24A9 x C24
  • C24
  • Wassilewskija
  • Cape Verde Islands
  • Cape Verde Islands x Columbia
  • Columbia x Cape Verde Islands
  • Landsberg x Cape Verde Islands
  • Cape Verde Islands x Landsberg
  • Burren
  • Catania
  • Kaunas
  • Oystese
  • San Feliu
  • Tsu
  • Zurich
  • Martuba
  • Wu x Rschew
  • Zurich x Edinburghnburgh
  • ABRC
  • Col

Genetic modification

  • ibm1-4
  • ibm2-2
  • ft-1
  • dme mutant
  • fie mutant
  • met1 mutant
  • spl7-2
  • autotetraploids
  • skip-2 mutant
  • ibm1-3 mutant
  • pEXP7-GFP
  • 35S:GR-RBE
  • met1 Mutant
  • SDC::GFP cmt3-11 crt1-3
  • gun1
  • sig6
  • gun1/sig6
  • ddm1
  • mom1
  • met1atxr56
  • h2a.z mutant
  • h2a.z-related wild type (F2 sibling)
  • pif1pif3pif4pif5 (pifq) mutant
  • myb57-2 mutant
  • pin6-2 mutant
  • reduced HSP90
  • ddm1_drd1
  • drd1
  • met1
  • upf1-/-upf3-/-
  • At5g53180 overexpression
  • At3g01150 overexpression
  • mos2-2
  • pif5 mutant
  • pif345 mutant
  • pif145 mutant
  • steady-state mRNA
  • sad1 mutant
  • hda6 polIV mutant
  • hda6 polV mutant
  • nonpolyA
  • APX (Ascorbate peroxidase) over-expressing transgenic line
  • Cu/Zn-SOD + APX overexpressing transgenic line
  • E2
  • tnr-1
  • IBH1 overexpression
  • ibl1 mutant
  • sdg8
  • RD26oNT
  • rd26ox
  • rd24ox
  • larp1 mutant
  • 35S::HBI1-YFP
  • med18
  • UBQ10:NTF::ACT2:birA
  • osd1
  • fae1
  • ref8-1
  • med5a/5b
  • be1-3
  • hps7
  • nga 1/2/3/4
  • NIK
  • T474D
  • nip1;1
  • ros5
  • ESTpro:SPCH1-4A-YFP
  • UBQ10:NTF/ACT2p:BirA
  • clavata2-gabi
  • Upf1-5
  • atrtf2-1
  • prp8-7
  • atrtf2-2He
  • atrtf2-2Ho
  • WT

Oryza sativa

Tissue

  • inflorescence
  • shoot system
  • root
  • flag leaf
  • root tip
  • leaf
  • anther
  • gynoecium
  • seed
  • plant embryo
  • endosperm
  • plant callus
  • whole plant
  • root vascular system
  • root giant cell
  • aleurone layer
  • vegetative cell
  • plant egg cell
  • plant sperm cell
  • stem internode
  • leaf sheath
  • stem

Treatment

  • hydroponic plant culture media
  • Meloidogyne graminicola
  • Hirschmaniella oryzae
  • inorganic cation treatment
  • bacterial plant treatment
  • warm/hot air temperature regimen
  • air temperature regimen
  • cold air temperature regimen
  • abscisic acid treatment
  • gibberellic acid treatment
  • rice stripe virus
  • phosphate treatment
  • limited phosphate treatment
  • colchicine

Stage

Genetic background

  • 93-11
  • Nipponbare
  • CL151
  • CL161
  • Dongjin
  • Xieyou9308
  • R9308
  • Xieqingzao B
  • cl
  • dx
  • hh
  • Zhonghua11
  • Fengjin
  • Nipponbare x HEG4
  • Kitaake
  • 93-11 x Nipponbare
  • Nipponbare x 93-11
  • 9311(15)

Genetic modification

  • jmj703
  • Zhu1s
  • Zhu1s
  • Pi9
  • OXmiR397b
  • OXLAC
  • emf2b-1
  • overexpression of OsNMD3?NLS
  • OsMET1-2 +/-
  • OsMET1-2 -/-
  • cslf6 mutant

Solanum lycopersicum

Tissue

  • fruit
  • whole plant
  • root
  • flower
  • flower bud
  • shoot apex
  • leaf
  • vegetative shoot apical meristem
  • lateral root
  • root tip
  • exocarp
  • septum
  • seed
  • pericarp
  • flower abscission zone
  • leaf abscission zone
  • flower meristem
  • stem
  • anther
  • shoot apical meristem
  • leaflet primordium

Treatment

  • organic chemical treatment
  • benzyladenine treatment
  • 1-naphthaleneacetic acid treatment
  • light regimen
  • abscisic acid treatment
  • Pseudomonas syringae plant treatment
  • bacterial plant treatment
  • virus plant treatment
  • control treatment
  • ethylene treatment
  • air temperature regimen
  • warm/hot air temperature regimen

Stage

  • Mature green

Genetic background

  • Moneymaker
  • FL7600
  • OH9242
  • T5
  • PI114490
  • Ailsa Craig
  • Heinz
  • M82
  • S. pimpinellifolium
  • Micro-Tom
  • Break o' Day
  • SUN1642
  • Yellow Stuffer
  • Hongtaiyang 903
  • Rio Grande
  • CLN2777A
  • TMXA48-4-0
  • M82 x S. pennellii

Genetic modification

  • miR167 transgenic line MIR167a221-2
  • miR167 transgenic line MIR167a222-2
  • miR167 transgenic line MIR167a222-3
  • mutant TERMINARING FLOWER
  • high pigment 1 mutant
  • LA1589 SUN locus
  • SUN1642 SUN locus
  • fw3.2(ys)
  • fw3.2(wt)
  • fw3.2(ys) RNAi-2Q1
  • over-expressing SlGLK2
  • SlKLUH RNAi
  • rin mutant
  • FUL1/FUL2-suppressed transgenic line TF18
  • prf3
  • BOP RNAi
  • RG-PtoR
  • RG-prf3
  • RG-prf19

Sorghum bicolor

Tissue

  • leaf
  • root
  • shoot system
  • inflorescence
  • seed
  • gynoecium
  • plant embryo
  • endosperm
  • anther
  • flower meristem
  • flower
  • vegetative shoot apical meristem

Treatment

  • organic chemical treatment
  • mechanical damage
  • abscisic acid treatment
  • sodium hydroxide treatment
  • polyethylene glycol treatment

Stage

Genetic background

  • BTx623
  • Nakei-MS3B
  • Nakei-MS3B x M36001
  • M36001
  • CK60
  • San Chi San
  • China17
  • KS78
  • high-NUE bulk

Genetic modification

Vitis vinifera

Tissue

  • leaf
  • whole plant
  • fruit
  • pericarp

Treatment

  • mechanical damage
  • UV-C light regimen
  • Stramenopiles
  • control treatment
  • Ascomycota treatment
  • gibberellic acid treatment

Stage

Genetic background

  • Pinot noir
  • Pinot Noir
  • Corvina
  • Tannat
  • Ruby seedless x Sultanina
  • Ruby seedless
  • Sultanina
  • Centennial Seedless
  • Cabernet Sauvignon

Genetic modification

Medicago truncatula

Tissue

  • bud
  • root nodule
  • lamina
  • flower
  • root
  • fruit
  • leaf

Treatment

  • limited nitrogen regimen
  • bacterial plant treatment
  • control treatment
  • inorganic chemical treatment
  • organic chemical treatment
  • nitrogen macronutrient regimen

Stage

Genetic background

  • Jemalong A17
  • Jemalong J5

Genetic modification

  • down-reguraltion of MtTdp1
  • nfp (C31)
  • dmi3 (TRV25)

Solanum tuberosum

Tissue

  • leaf
  • whole plant
  • tuber
  • tuber axillary shoot

Treatment

  • Stramenopiles
  • ssRNA positive-strand virus with no DNA stage
  • Coleoptera
  • control treatment
  • autumn season
  • spring season
  • cytokinin treatment

Stage

Genetic background

  • SW1015
  • Sarpo Mira
  • Desiree
  • Atlantic
  • Premier Russet
  • Snowden
  • Russet Burbank
  • Igor

Genetic modification

  • Rpi-blb1
  • coi1

Glycine max

Tissue

  • seed
  • cotyledon
  • embryo proper
  • seed storage parenchyma
  • root
  • stem
  • flower bud
  • leaf
  • xylem sap
  • shoot apical meristem
  • plant embryo axis
  • shoot axis meristematic apical cell
  • endosperm parenchyma
  • cotyledon adaxial epidermis
  • endosperm
  • seed coat
  • cotyledon abaxial epidermis
  • cotyledon vascular system
  • plant embryo
  • flower
  • fruit
  • root nodule
  • vegetative bud
  • shoot meristem
  • hilum
  • inner integument
  • suspensor
  • endothelium
  • seed coat epidermis
  • outer integument
  • shoot system

Treatment

  • Basidiomycota treatment
  • control treatment
  • organic chemical treatment
  • bacterial plant treatment
  • short day length regimen
  • Nematoda
  • day light intensity
  • physical plant treatment
  • ethylene treatment
  • indole acetic acid treatment
  • jasmonic acid treatment
  • limited iron regimen
  • drought environment
  • sodium chloride regimen
  • chemical treatment
  • herbicide treatment
  • biotic plant treatment

Stage

Genetic background

  • Williams 82
  • Asgrow A3237
  • LD00-2817P x LDX01-1-65
  • Williams 43
  • LDX01-1-65
  • Bragg
  • Peking
  • 93B15
  • HiPro
  • Gongxuan 1
  • PI471938
  • PI416937
  • Hutchesen
  • Clark
  • Harosoy
  • SN28
  • Nannong 94-16
  • AG1631
  • Revertant in L72-204
  • Clark isoline L67-348
  • Benning
  • PI416940
  • PI416943
  • PI416944
  • PI416945
  • PI416949
  • PI416950
  • PI416951

Genetic modification

  • storage protein RNAi (SP-)
  • RIL-11272
  • R-11272
  • mutant
  • wild type
  • curled-cotyledon mutant